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Mechanisms to make important noncoding RNAs from dispensable coding RNAs

Research Project

Project/Area Number 16K14659
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field System genome science
Research InstitutionFujita Health University

Principal Investigator

Mayeda Akila  藤田保健衛生大学, 総合医科学研究所, 教授 (50212204)

Co-Investigator(Renkei-kenkyūsha) YOSHIMOTO Rei  藤田保健衛生大学, 総合医科学研究所 遺伝子発現機構学研究部門, 助教 (70595652)
OHNO Mutsuhito  京都大学, 医学部 ウイルス再生医科学研究所, 教授 (80201979)
Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2017: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2016: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords遺伝子発現調節 / ノンコーディングRNA / 環状RNA / スプライシング / ciRS-7 / MIR / 非翻訳RNA
Outline of Final Research Achievements

The circRNAs are abundant and stable noncoding RNAs with closed circular structure. The function of ciRS-7 (CDR1as) as ‘sponges’, or decoys, of the miR-7 micro RNA shed light on the biological roles of circRNAs.
We elucidated the biosynthesis pathway of this functional ciRS-7. Anti-sense oligoribonucleotide experiments targeting the relevant splice sites suggested the generation of ciRS-7 by back-splicing. We identified conserved inverted elements of MIR (mammalian-wide interspersed repeat) in the flanking region of the ciRS-7, which promoted the back-splicing event. Splicing reporter assays in stably transfected HEK293 cells with mini-genes, with and without MIR element, demonstrated the essential role of inverted MIR sequences in the ciRS-7 generation.
Previously the inverted repeats of Alu, primate-specific SINE was reported to involve in the back-splicing. The MIR-dependent circRNAs have emerged as a new category of circRNAs that are widely conserved in mammalian.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (10 results)

All 2017 2016 Other

All Int'l Joint Research (1 results) Journal Article (2 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (4 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results) Book (1 results) Remarks (2 results)

  • [Int'l Joint Research] Dept. of Molecular Biology and Genetics/Aarhus University(Denmark)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Endogenous Multiple Exon Skipping and Back-Splicing at the DMD Mutation Hotspot2016

    • Author(s)
      Hitoshi Suzuki, Yoshitsugu Aoki, Toshiki Kameyama, Takashi Saito, Satoru Masuda, Jun Tanihata, Tetsuya Nagata, Akila Mayeda, Shin’ichi Takeda, Toshifumi Tsukahara
    • Journal Title

      Int. J. Mol. Sci.

      Volume: 17 Issue: 10 Pages: 1722-1722

    • DOI

      10.3390/ijms17101722

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 環状RNA(circRNA)2016

    • Author(s)
      芳本玲, 前田 明
    • Journal Title

      ノンコーディングRNA―RNA分子の全体像を俯瞰する(DOJIN BIOSCIENCEシリーズ)

      Volume: 25 Pages: 271-279

    • Related Report
      2016 Research-status Report
  • [Presentation] 逆位スプライシングによって作られる環状RNAが核外に輸送される仕組み2017

    • Author(s)
      芳本 玲, 谷口 一郎, 大野 睦人, 前田 明
    • Organizer
      2017年度 生命科学系学会合同年次大会 (第40回 日本分子生物学会年会)
    • Related Report
      2017 Annual Research Report
  • [Presentation] 環状RNA(circRNA)の核外輸送機構の解明2017

    • Author(s)
      芳本 玲, 谷口 一郎, 大野 睦人, 前田 明
    • Organizer
      2017年度 生命科学系学会合同年次大会 (第40回 日本分子生物学会年会)
    • Related Report
      2017 Annual Research Report
  • [Presentation] Pre-mRNA splicing generates not only linear conding RNA (mRNA), but also circular non-coding RNA (circRNA)2016

    • Author(s)
      A. Mayeda
    • Organizer
      Mini-Symposium on ncRNA
    • Place of Presentation
      Academia Sinica (Taipei, Taiwan)
    • Year and Date
      2016-09-29
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] The functional circular RNA, ciRS-7/CDR1as, is biosynthesized from back-splicing promoted by Inverted MIR (not Alu) Elements.2016

    • Author(s)
      R. Yoshimoto, T.B. Hansen, J. Kjems, A. Mayeda
    • Organizer
      The 21th Annual Meeting of the RNA Society / The 18th Annual Meeting of the RNA Society of Japan
    • Place of Presentation
      京都国際会館(京都府、京都市)
    • Year and Date
      2016-06-28
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Book] 実験医学特集号「coding RNAルネッサンス」2016

    • Author(s)
      片岡 直行, 前田 明
    • Total Pages
      142
    • Publisher
      羊土社
    • Related Report
      2016 Research-status Report
  • [Remarks] 藤田保健衛生大学 総合医科学研究所 遺伝子発現機構学研究部門

    • URL

      http://www.fujita-hu.ac.jp/~gem-1/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 藤田保健衛生大学 総合医科学研究所 遺伝子発現機構学研究部門

    • URL

      http://www.fujita-hu.ac.jp/%7Egem-1/

    • Related Report
      2016 Research-status Report

URL: 

Published: 2016-04-21   Modified: 2019-03-29  

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