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Effect of the genetic structure of a host species on the evolution of an emerging pathogenic virus

Research Project

Project/Area Number 16K16203
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Environmental impact assessment
Research InstitutionOsaka Ohtani University

Principal Investigator

Uchii Kimiko  大阪大谷大学, 薬学部, 助教 (90469619)

Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Fiscal Year 2017: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2016: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords野生生物感染症 / 新興感染症 / 環境DNA / コイヘルペスウイルス / 野生生物新興感染症
Outline of Final Research Achievements

A single strain of Cyprinid herpesvirus 3 (CyHV3), which causes lethal disease in common carp, was introduced to Lake Biwa in 2004. The susceptibility to CyHV3 differs between common carp genotypes, where Japanese native strains are less resistant to the virus. I tried to evaluate the difference in mutation pattern of virulence-related genes of CyHV3 between host carp populations with different genetic structures, i.e., frequency of native and non-native genotypes. Using environmental DNA analysis, differences in population genetic structure were detected between local populations. However, no difference was found in mutation rate of the four CyHV3 genes.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (7 results)

All 2018 2017 2016

All Journal Article (3 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (4 results)

  • [Journal Article] Distinct seasonal migration patterns of Japanese native and non-native genotypes of common carp estimated by environmental DNA2017

    • Author(s)
      Uchii Kimiko、Doi Hideyuki、Yamanaka Hiroki、Minamoto Toshifumi
    • Journal Title

      Ecology and Evolution

      Volume: 7 Issue: 20 Pages: 8515-8522

    • DOI

      10.1002/ece3.3346

    • NAID

      120006358583

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 環境DNAによる外来種および希少種の迅速な検出2017

    • Author(s)
      内井喜美子
    • Journal Title

      環境技術

      Volume: 46 Pages: 630-635

    • Related Report
      2017 Annual Research Report
  • [Journal Article] 環境DNAモニタリング手法の課題と展望2017

    • Author(s)
      源利文、内井喜美子、高原輝彦、土居秀幸
    • Journal Title

      環境技術

      Volume: 46 Pages: 648-652

    • Related Report
      2017 Annual Research Report
  • [Presentation] 環境DNAを用いて宿主と病原生物の動態を探る2018

    • Author(s)
      内井喜美子、源利文
    • Organizer
      日本生態学会第65回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 核DNAマーカーを用いた環境DNA分析による交雑個体群の遺伝構造解析2017

    • Author(s)
      内井喜美子、土居秀幸、山中裕樹、源利文
    • Organizer
      日本生態学会第64回大会
    • Place of Presentation
      早稲田大学(東京・新宿区)
    • Year and Date
      2017-03-15
    • Related Report
      2016 Research-status Report
  • [Presentation] 核DNAマーカーを用いた環境DNA分析2017

    • Author(s)
      内井喜美子、土居秀幸、山中裕樹、源利文
    • Organizer
      日本陸水学会第82回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 環境DNA研究におけるSNPマーカーの活用2016

    • Author(s)
      内井喜美子、土居秀幸、源利文、山中裕樹
    • Organizer
      日本陸水学会第81回大会
    • Place of Presentation
      琉球大学(沖縄・西原町)
    • Year and Date
      2016-11-06
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2019-03-29  

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