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Adaptive evolution of multi-copy hatching enzyme genes in Oryzias

Research Project

Project/Area Number 16K18593
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Evolutionary biology
Research InstitutionSophia University

Principal Investigator

Kawaguchi Mari  上智大学, 理工学部, 准教授 (00612095)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2018: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordshatching enzyme / egg envelope / recombinant protein / enzyme activity / medaka / adaptation / hatching / 孵化酵素 / 環境適応 / 多重コピー遺伝子
Outline of Final Research Achievements

Embryos are surrounded by egg envelope to protect from physical stress, and then, secrete hatching enzymes HCE and LCE to dissolve the envelope at hatching. In medaka, two isoforms of HCE having high sequence similarity show different optimum salinities for egg envelope digestion. In this study, we tried to figure out the amino acid residues responsible for the different optimal salinity between the two isoforms. We constructed various kinds of mutant recombinant HCEs, and determined their optimal salinity. As the results, we found that the change of optimal salinity was caused by several amino acid residues. We further determined nucleotide sequence of the HCE cluster of 5 fishes from genus Oryzias. Then, the optimal salinity of HCE of each species was examined from their recombinant HCEs. Based on these data, three amino acid residues were suggested to be most important for different optimal salinity of HCE.

Academic Significance and Societal Importance of the Research Achievements

本研究の特色は、第一に、タンパク質レベルの実験を通して適応進化を論じる点である。本研究は、多重コピー遺伝子の活性の多様性と適応進化との関係について考察するもので、これによって進化生物学の分野に重要な知見を提供できると確信する。第二に、DNAレベルとタンパク質レベルの実証可能な実験系を導入して、マクロな多様化のメカニズムの解明にアプローチしている点である。タンパク質の機能を実際に観察しながら、具体的にどの部位のどのアミノ酸変異が環境への適応や生物の多様化に関わっているのかを詳細に解析しようとする点も、本研究の重要な特色である。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (60 results)

All 2019 2018 2017 2016

All Journal Article (9 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 5 results,  Open Access: 2 results) Presentation (49 results) (of which Int'l Joint Research: 10 results,  Invited: 5 results) Book (2 results)

  • [Journal Article] Translocation of promoter-conserved hatching enzyme genes with intron-loss provides a new insight in the role of retrocopy during teleostean evolution.2019

    • Author(s)
      Tatsuki Nagasawa, Mari Kawaguchi, Tohru Yano, Sho Isoyama, Shigeki Yasumasu, and Masataka Okabe.
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 2447-2447

    • DOI

      10.1038/s41598-019-38693-6

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome sequence of the euryhaline Javafish medaka, Oryzias javanicus: a small aquarium fish model for studies on adaptation to salinity.2019

    • Author(s)
      Yusuke Takehana, Margot Zahm, Cedric Cabau, Christophe Klopp,Celine Roques, Olivier Bouchez, Cecile Donnadieu, Celia Barrachina, Laurent Journot, Mari Kawaguchi, Shigeki Yasumasu,Satoshi Ansai, Kiyoshi Naruse, Koji Inoue, Chuya Shinzato, Manfred Schartl, Yann Guiguen, and Amaury Herpin
    • Journal Title

      BioRxiv

      Volume: 印刷中

    • DOI

      10.1101/593673

    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Journal Article] Male parental assistance in embryo hatching of barred-chin blenny Rhabdoblennius nitidus2019

    • Author(s)
      Sano, K., Yokoyama, R., Kitano, T., Takegaki, T., Kitazawa, N., Kaneko, T., Nishino, Y., Yasumasu, S., Kawaguchi, M.
    • Journal Title

      J. Exp. Zool. B

      Volume: in press Issue: 3-4 Pages: 000-000

    • DOI

      10.1002/jez.b.22854

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] IFPA meeting 2018 workshop report I: Reproduction and placentationamong ocean-living species; placental imaging; epigenetics and extracellularvesicles in pregnancy.2019

    • Author(s)
      Ganesh Acharya, Marisa Bartolomei, Anthony M. Carter, Larry Chamley, Charles F. Cotton, Junichi Hasegawa, Yuri Hasegawa, Satoshi Hayakawa, Mari Kawaguchi, et al.
    • Journal Title

      Placenta

      Volume: 印刷中

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] 図書紹介:タツノオトシゴ図鑑2018

    • Author(s)
      川口眞理
    • Journal Title

      魚類学雑誌

      Volume: 65 Pages: 217-217

    • Related Report
      2018 Annual Research Report
  • [Journal Article] 究極のイクメン魚―タツノオトシゴ2018

    • Author(s)
      川口眞理
    • Journal Title

      実験医学

      Volume: 36 Pages: 604-608

    • Related Report
      2018 Annual Research Report
  • [Journal Article] 究極のイクメン魚―タツノオトシゴ2018

    • Author(s)
      川口眞理
    • Journal Title

      実験医学「私の実験動物、やっぱり個性派です!」

      Volume: 36 Pages: 604-608

    • Related Report
      2017 Research-status Report
  • [Journal Article] Morphology of brood pouch formation in the pot-bellied seahorse Hippocampus abdominalis2017

    • Author(s)
      Kawaguchi M, Okubo R, Harada A, Miyasaka K, Takada K, Hiroi J, Yasumasu S
    • Journal Title

      Zoological Letters

      Volume: 3 Issue: 1 Pages: 19-19

    • DOI

      10.1186/s40851-017-0080-9

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comparison of egg envelope thickness in teleosts and its relationship to the sites of ZP protein synthesis2017

    • Author(s)
      Sano Kaori, Mari Kawaguchi, Keita Katano, Kenji Tomita, Mayu Inokuchi, Tatsuki Nagasawa, Junya Hiroi, Toyoji Kaneko, Takashi Katagawa, Takafumi Fujimoto, Katsutoshi Arai, Masaru Tanaka and Shigeki Yasumasu
    • Journal Title

      Journal of Eperimental Zoology PartB: Molecular and Developmental Evolution

      Volume: 印刷中 Issue: 3 Pages: 240-258

    • DOI

      10.1002/jez.b.22729

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] タツノオトシゴの育児嚢の形成に関わる候補遺伝子の発現パターン2019

    • Author(s)
      原田明里・川原玲香・川口眞理
    • Organizer
      第71回日本動物学会関東支部
    • Related Report
      2018 Annual Research Report
  • [Presentation] メダカの卵膜硬化に関与するトランスグルタミナーゼ2019

    • Author(s)
      佐藤千優・川口眞理・安増茂樹
    • Organizer
      第71回日本動物学会関東支部
    • Related Report
      2018 Annual Research Report
  • [Presentation] キュウリウオ目に存在する3つの孵化酵素の卵膜分解系:タンパク質機能性は、合目的で洗練されたシステムに進化する2019

    • Author(s)
      小島利恵子・松田千紘・高江洲雪子・川口眞理・安増茂樹
    • Organizer
      第71回日本動物学会関東支部
    • Related Report
      2018 Annual Research Report
  • [Presentation] ヨウジウオ科魚類の育児嚢の進化2018

    • Author(s)
      川口眞理
    • Organizer
      第51回日本魚類学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Formation of seahorse brood pouch2018

    • Author(s)
      Mari Kawaguchi
    • Organizer
      International Federation of Placenta Associations
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 骨魚類孵化酵素遺伝子のイントロン消失メカニズム―ゲノム構造の進化的制約から解放された遺伝子の分子進化―2018

    • Author(s)
      長澤竜樹・川口眞理・矢野十織・礒山翔・安増茂樹・岡部正隆
    • Organizer
      第89回日本動物学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ニジマス孵化酵素の卵膜分解機能2018

    • Author(s)
      竹野陸央・川口眞理・安増茂樹
    • Organizer
      第89回日本動物学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] タツノオトシゴの育児嚢の形成に関わる分化因子の探査2018

    • Author(s)
      原田明里・川原玲香・川口眞理
    • Organizer
      第89回日本動物学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 孵化酵素遺伝子のイントロン消失メカニズム:分子進化におけるレトロコピーの新たな役割の考察2018

    • Author(s)
      長澤竜樹・川口眞理・矢野十織・礒山翔・安増茂樹・岡部正隆
    • Organizer
      第20回日本進化学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Molecular evolution of transglutaminase responsible for egg envelope hardening in fish2018

    • Author(s)
      Shigeki Yasumasu, Miyuki Horie, Tatsuki Nagasawa, Akira Oike, Mari Kawaguchi
    • Organizer
      第24回小型魚類研究会
    • Related Report
      2018 Annual Research Report
  • [Presentation] タツノオトシゴの育児嚢の形成のカギを握る遺伝子は何か?2018

    • Author(s)
      川口眞理・原田明里
    • Organizer
      第4回ユニークな少数派実験動物を扱う若手が最先端アプローチを勉強する会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Sub-functionalization of hatching enzyme genes during evolution of sticklebacks2018

    • Author(s)
      Mari Kawaguchi, Kaori Sano, and Shigeki Yasumasu
    • Organizer
      9th International Conference on Stickleback Behavior and Evolution
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Neofunctionalization of duplicated hatching enzyme genes in the teleost evolution.2018

    • Author(s)
      Kaori Sano, Shuhei Ohno, Akitaka Izuha, Keisuke Imai, Mari Kawaguchi, and Shigeki Yasumasu
    • Organizer
      Society for Integrative and Comparative Biology, San Francisco, USA
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Co-evolution of fish hatching enzyme and its substrate.2018

    • Author(s)
      Shigeki Yasumasu, Kaori Sano, Tatsuki Nagasawa, and Mari Kawaguchi
    • Organizer
      Society for Integrative and Comparative Biology, San Francisco, USA
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Formation of seahorse brood pouch.2018

    • Author(s)
      Mari Kawaguchi, Akari Harada, and Shigeki Yasumasu
    • Organizer
      Society for Integrative and Comparative Biology, San Francisco, USA
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] タツノオトシゴの育児嚢における真皮層特異的マーカーの探査2018

    • Author(s)
      木下奈々・川原玲香・川口眞理
    • Organizer
      第70回日本動物学会関東支部
    • Related Report
      2017 Research-status Report
  • [Presentation] タツノオトシゴの育児嚢の形成に関わる候補遺伝子の発現解析2018

    • Author(s)
      原田明里・川原玲香・川口眞理
    • Organizer
      第70回日本動物学会関東支部
    • Related Report
      2017 Research-status Report
  • [Presentation] タツノオトシゴの育児嚢におけるC型レクチンの局在2018

    • Author(s)
      宮坂和希・川口眞理
    • Organizer
      第70回日本動物学会関東支部
    • Related Report
      2017 Research-status Report
  • [Presentation] 妊娠中のタツノオトシゴの育児嚢で発現する遺伝子の探査2018

    • Author(s)
      岡沢耀平・川原玲香・川口眞理
    • Organizer
      第70回日本動物学会関東支部
    • Related Report
      2017 Research-status Report
  • [Presentation] メダカを用いた正真骨魚類の卵膜合成機構の研究2018

    • Author(s)
      西野良英・川口眞理・佐野香織・安増茂樹
    • Organizer
      第70回日本動物学会関東支部
    • Related Report
      2017 Research-status Report
  • [Presentation] メダカ孵化酵素LCEと基質卵膜ChgHのドッキングシミュレーションによる複合体形成2018

    • Author(s)
      竹野陸央・川口眞理・佐野香織・安増茂樹
    • Organizer
      第70回日本動物学会関東支部
    • Related Report
      2017 Research-status Report
  • [Presentation] タツノオトシゴの育児嚢~形成メカニズムと進化~2018

    • Author(s)
      川口眞理
    • Organizer
      第70回日本動物学会関東支部公開シンポジウム「魚類の多様な世界~魚はどのように進化したのか~」
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] タツノオトシゴの育児嚢の進化2018

    • Author(s)
      川口眞理
    • Organizer
      第123回日本解剖学会シンポジウム「体表の進化生物学」
    • Related Report
      2017 Research-status Report
  • [Presentation] おさかな周期表~魚類の多様な系統と分類の理解をめざして~2017

    • Author(s)
      川口眞理・西田 睦
    • Organizer
      第101回日本生物教育学会
    • Place of Presentation
      東京学芸大学、東京都・小金井市
    • Year and Date
      2017-01-07
    • Related Report
      2016 Research-status Report
  • [Presentation] Morphological observation of formation of seahorse brood pouch2017

    • Author(s)
      Mari Kawaguchi
    • Organizer
      3rd International Syngnathid Biology Symposium (SyngBio 2017)
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] タツノオトシゴの育児嚢形成に関わる遺伝子の探査2017

    • Author(s)
      川口眞理
    • Organizer
      第3回ユニークな少数派実験動物を扱う若手が最先端アプローチを勉強する会
    • Related Report
      2017 Research-status Report
  • [Presentation] 真骨魚類の進化過程において孵化酵素遺伝子はintronを失いながら,頻繁にretrotranslocationを起こした2017

    • Author(s)
      長澤竜樹・川口眞理・矢野十織・安増茂樹・岡部正隆
    • Organizer
      第19回日本進化学会
    • Related Report
      2017 Research-status Report
  • [Presentation] タツノオトシゴの育児嚢の形成と雄性ホルモンによる誘導2017

    • Author(s)
      川口眞理
    • Organizer
      第19回日本進化学会シンポジウム「エボデボから見る非モデル生物研究の魅力」
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] 真骨魚類の卵膜硬化の分子メカニズム2017

    • Author(s)
      堀江望由季・安増茂樹・川口眞理
    • Organizer
      第88回日本動物学会
    • Related Report
      2017 Research-status Report
  • [Presentation] メダカ卵巣で発現するZP遺伝子の機能解析2017

    • Author(s)
      西野良英・安増茂樹・川口眞理・佐野香織
    • Organizer
      第88回日本動物学会
    • Related Report
      2017 Research-status Report
  • [Presentation] 真骨魚類の進化過程において孵化酵素遺伝子が頻繁に経験したretrotranslocationとintron-lossの関係2017

    • Author(s)
      長澤竜樹・川口眞理・矢野十織・安増茂樹・岡部正隆
    • Organizer
      第88回日本動物学会
    • Related Report
      2017 Research-status Report
  • [Presentation] 組織観察によるタツノオトシゴ類の育児嚢の進化過程2017

    • Author(s)
      原田明里・川口眞理
    • Organizer
      第88回日本動物学会
    • Related Report
      2017 Research-status Report
  • [Presentation] ロウソクギンポRhabdoblennius nitidusの孵化におけるオスのアシスト2017

    • Author(s)
      佐野香織・横山莉沙・竹垣毅・川口眞理
    • Organizer
      第50回日本魚類学会
    • Related Report
      2017 Research-status Report
  • [Presentation] タツノオトシゴとイシヨウジの育児嚢の組織観察2017

    • Author(s)
      原田明里・川口眞理
    • Organizer
      第50回日本魚類学会
    • Related Report
      2017 Research-status Report
  • [Presentation] タツノオトシゴの育児嚢を構成する組織の形成過程2017

    • Author(s)
      原田明里・川口眞理
    • Organizer
      第69回日本動物学会関東支部
    • Place of Presentation
      筑波大学東京キャンパス、東京都・文京区
    • Related Report
      2016 Research-status Report
  • [Presentation] タツノオトシゴの育児嚢の形成はアンドロゲンによって誘導される2017

    • Author(s)
      高梨亜登・川口眞理
    • Organizer
      第69回日本動物学会関東支部
    • Place of Presentation
      筑波大学東京キャンパス、東京都・文京区
    • Related Report
      2016 Research-status Report
  • [Presentation] チョウザメにおける孵化腺細胞の分泌様式2017

    • Author(s)
      会田裕貴・長澤竜樹・川口眞理・安増茂樹
    • Organizer
      第69回日本動物学会関東支部
    • Place of Presentation
      筑波大学東京キャンパス、東京都・文京区
    • Related Report
      2016 Research-status Report
  • [Presentation] CRISPR/Cas9法によるメダカKLF17遺伝子のノックアウト2017

    • Author(s)
      日野由佳子・長澤竜樹・川口眞理・安増茂樹
    • Organizer
      第69回日本動物学会関東支部
    • Place of Presentation
      筑波大学東京キャンパス、東京都・文京区
    • Related Report
      2016 Research-status Report
  • [Presentation] ニジマス孵化酵素の卵膜分解機構2017

    • Author(s)
      竹野陸央・藤田正博・藤田恭子・川口眞理・安増茂樹
    • Organizer
      第69回日本動物学会関東支部
    • Place of Presentation
      筑波大学東京キャンパス、東京都・文京区
    • Related Report
      2016 Research-status Report
  • [Presentation] Morphological observation of formation of seahorse brood pouch2016

    • Author(s)
      Ryohei Okubo, Mari Kawaguchi
    • Organizer
      Non-conventional animal models surfing the new waves of cutting-edge technologies. Joint Meeting of the 22nd International Congress of Zoology and the 87th meeting of Zoological Society of Japan
    • Place of Presentation
      沖縄科学技術大学院大学、沖縄県・国頭郡
    • Year and Date
      2016-11-14
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular co-evolution of a hatching enzyme and its substrate2016

    • Author(s)
      Shigeki Yasumasu, Kaori Sano, Tatsuki Nagasawa, and Mari Kawaguchi
    • Organizer
      Joint Meeting of the 22nd International Congress of Zoology and the 87th meeting of Zoological Society of Japan
    • Place of Presentation
      沖縄科学技術大学院大学、沖縄県・国頭郡
    • Year and Date
      2016-11-14
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Production of a neofunctionalized hatching enzyme from a recombinant enzyme with ancestral activity by amino acid mutation2016

    • Author(s)
      aori Sano, Shuhei Ohno, Akitaka Izuha, Mari Kawaguchi, Shigeki Yasumasu
    • Organizer
      Joint Meeting of the 22nd International Congress of Zoology and the 87th meeting of Zoological Society of Japan
    • Place of Presentation
      沖縄科学技術大学院大学、沖縄県・国頭郡
    • Year and Date
      2016-11-14
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] The conserved enhancer of the hatching enzyme gene in ray-finned fish2016

    • Author(s)
      Tatsuki Nagasawa, Tohru Yano, Mari Kawaguchi, Shigeki Yasumasu, and Masataka Okabe
    • Organizer
      Joint Meeting of the 22nd International Congress of Zoology and the 87th meeting of Zoological Society of Japan
    • Place of Presentation
      沖縄科学技術大学院大学、沖縄県・国頭郡
    • Year and Date
      2016-11-14
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] タツノオトシゴの育児嚢の形態学的観察2016

    • Author(s)
      大窪遼平・川口眞理
    • Organizer
      第49回日本魚類学会
    • Place of Presentation
      岐阜大学、岐阜県・岐阜市
    • Year and Date
      2016-09-23
    • Related Report
      2016 Research-status Report
  • [Presentation] メダカ属は淡水型と汽水型の2種類の孵化酵素をもつのか?2016

    • Author(s)
      福岡明子・竹花佑介・豊田敦・成瀬清・安増茂樹・川口眞理
    • Organizer
      第18回日本進化学会
    • Place of Presentation
      東京工業大学、東京都・目黒区
    • Year and Date
      2016-08-25
    • Related Report
      2016 Research-status Report
  • [Presentation] ゼブラフィッシュ孵化酵素遺伝子のエンハンサー解析2016

    • Author(s)
      長澤竜樹・矢野十織・川口眞理・安増茂樹・岡部正隆
    • Organizer
      第18回日本進化学会
    • Place of Presentation
      東京工業大学、東京都・目黒区
    • Year and Date
      2016-08-25
    • Related Report
      2016 Research-status Report
  • [Presentation] 真骨魚類卵膜遺伝子の進化2016

    • Author(s)
      佐野香織・島田将・川口眞理・安増茂樹
    • Organizer
      第18回日本進化学会
    • Place of Presentation
      東京工業大学、東京都・目黒区
    • Year and Date
      2016-08-25
    • Related Report
      2016 Research-status Report
  • [Presentation] タツノオトシゴの育児嚢の形成2016

    • Author(s)
      川口眞理
    • Organizer
      第2回ユニークな少数派実験動物を扱う若手が最先端アプローチを勉強する会
    • Place of Presentation
      岡崎カンファレンス、愛知県・岡崎市
    • Year and Date
      2016-08-21
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] タツノオトシゴ類の孵化様式2016

    • Author(s)
      川口眞理・大窪遼平・川原玲香・井ノ口繭・金子豊二
    • Organizer
      生物資源ゲノム解析拠点シンポジウム・研究発表会
    • Place of Presentation
      東京農業大学、東京都・世田谷区
    • Related Report
      2016 Research-status Report
  • [Book] 『魚類学の百科事典』8章「孵化」2018

    • Author(s)
      川口眞理
    • Total Pages
      704
    • Publisher
      丸善
    • ISBN
      4621303171
    • Related Report
      2018 Annual Research Report
  • [Book] 『魚類学の百科事典』9章「孵化に関わる遺伝子」2018

    • Author(s)
      川口眞理
    • Total Pages
      704
    • Publisher
      丸善
    • ISBN
      4621303171
    • Related Report
      2018 Annual Research Report

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Published: 2016-04-21   Modified: 2020-03-30  

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