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Reconstruction and Analysis of Life Systems Using Knowledge-Processing Technology

Research Project

Project/Area Number 17017002
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionThe University of Tokyo

Principal Investigator

TAKAGI Toshihisa  The University of Tokyo, 大学院・新領域創成科学研究科, 教授 (30110836)

Co-Investigator(Kenkyū-buntansha) TSUJII Junichi  東京大学, 大学院・情報理工学系研究科, 教授 (20026313)
NAKAYA Akihiro  東京大学, 大学院・新領域創成科学研究科, 准教授 (60301149)
IWASAKI Wataru  東京大学, 大学院新領域創成科学研究科, 助教 (50545019)
Project Period (FY) 2005 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥158,000,000 (Direct Cost: ¥158,000,000)
Fiscal Year 2009: ¥30,400,000 (Direct Cost: ¥30,400,000)
Fiscal Year 2008: ¥30,300,000 (Direct Cost: ¥30,300,000)
Fiscal Year 2007: ¥32,900,000 (Direct Cost: ¥32,900,000)
Fiscal Year 2006: ¥32,400,000 (Direct Cost: ¥32,400,000)
Fiscal Year 2005: ¥32,000,000 (Direct Cost: ¥32,000,000)
Keywordsオントロジー / 機能解析 / パスウェイデータベース / テキストからの情報抽出 / 自然言語処理 / QTL解析 / 知識発見 / 文献クラスタリング / パスウエイデータベース
Research Abstract

To understand life as systems, we developed the following technologies: high-dimensional QTL analysis by using abundant image data, interpretation of omics experiments assisted by text-mining, text mining of methodological information from literatures, classification of figures in research papers, evolutionary analysis of genomes and biological networks by using abundant genome data, methods for comparing networks from different species, and navigation tools for interpreting huge network data.

Report

(6 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • Research Products

    (89 results)

All 2010 2009 2008 2007 2006 2005 Other

All Journal Article (45 results) (of which Peer Reviewed: 9 results) Presentation (23 results) Book (3 results) Remarks (18 results)

  • [Journal Article] Figure classification in biomedical literature to elucidate disease mechanisms, based on pathways2010

    • Author(s)
      Ishii, N.
    • Journal Title

      Artificial Intelligence in Medicine ((印刷中)掲載確定)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Classifying biomedical figures using combination of bag of keypoints and bag of keywords, Proc. of 2nd Int. Workshop on Intell2009

    • Author(s)
      Koike, A., Takagi, T.
    • Journal Title

      Inform. in Biol. and Med.

      Pages: 848-853

    • Related Report
      2009 Final Research Report
  • [Journal Article] Rapid Pathway Evolution Facilitated by Horizontal Gene Transfers across Prokaryotic Lineages2009

    • Author(s)
      Iwasaki, W., Takagi, T.
    • Journal Title

      PLoS Genetics. 5(3)

    • Related Report
      2009 Final Research Report
  • [Journal Article] Classifying biomedical figures using combination of bag of keypoints and bag of keywords2009

    • Author(s)
      Koike, A. (Takagi, T.)
    • Journal Title

      Proc. of 2nd Int. Workshop on Intell. Inform. in Biol. and Med. (印刷中)(掲載確定)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Rapid pathway evolution facilitated by horizontal gene transfers across prokaryotic lineages2009

    • Author(s)
      Iwasaki, W. (Takagi, T.)
    • Journal Title

      PLoS Genetics 5(3)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Figure Classification in Biomedical Literature towards Figure Mining2008

    • Author(s)
      Ishii, N., Koike, A., Yamamoto, Y., Takagi, T.
    • Journal Title

      IEEE International Conference on Bioinformatics and Biomedicine

      Pages: 263-269

    • Related Report
      2009 Final Research Report
  • [Journal Article] Figure classification in biomedical literature towards figure mining2008

    • Author(s)
      Ishii, N. (Takagi, T.)
    • Journal Title

      Proc. of IEEE International Conference on Bioinformatics and Biomedicine

      Pages: 263-269

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reconstruction of Highly Heterogeneous Gene-Content Evolution across the Three Domains of Life2007

    • Author(s)
      Iwasaki, W., Takagi, T.
    • Journal Title

      Bioinformatics (ISMB/ECCB2007 proceeding issue) 23

    • Related Report
      2009 Final Research Report
  • [Journal Article] OReFiL: an online resource finder for life sciences2007

    • Author(s)
      Yamamoto, Y., Takagi, T.
    • Journal Title

      BMC Bioinformatics 8

      Pages: 287-287

    • Related Report
      2009 Final Research Report
  • [Journal Article] Biomedical knowledge navigation by literature clustering2007

    • Author(s)
      Yamamoto, Y., Takagi, T.
    • Journal Title

      Journal of Biomedical Informatics 40(2)

      Pages: 114-130

    • Related Report
      2009 Final Research Report
  • [Journal Article] Knowledge discovery based on an implicit and explicit conceptual network.2007

    • Author(s)
      Koike, A., Takagi, T.
    • Journal Title

      J. Am. Soc. Info. Sci. Tech. 58(1)

      Pages: 51-65

    • Related Report
      2009 Final Research Report
  • [Journal Article] Reconstruction of highly heterogeneous gene-content evolution across the three domains of life2007

    • Author(s)
      Iwasaki, W. (Takagi, T.)
    • Journal Title

      Bioinformatics 23(13)

      Pages: 230-239

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] OReFiL: an online resource finder for life sciences2007

    • Author(s)
      Yamamoto, Y. (Takagi, T.)
    • Journal Title

      BMC Bioinformatics 8

      Pages: 287-287

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes2007

    • Author(s)
      Kurokawa, K. (Takagi, T.)
    • Journal Title

      DNA Research 14(4)

      Pages: 169-181

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biomedical knowledge navigation by literature clustering2007

    • Author(s)
      Yamamoto, Y. (Takagi, T.)
    • Journal Title

      Journal of Biomedical Informatics 40(2)

      Pages: 114-130

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Knowledge discovery based on an implicit and explicit conceptual network2007

    • Author(s)
      Koike, A. (Takagi, T.)
    • Journal Title

      Journal of the American Society for Information Science and Technology 58(1)

      Pages: 51-65

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biomedical knowledge navigation by literature clustering2007

    • Author(s)
      Yamamoto, Y., (Takagi, T.)
    • Journal Title

      Journal of Biomedical Informatices 40 (2)

      Pages: 114-130

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Knowledge discovery based on an implicit and explicit conceptual network2007

    • Author(s)
      Koike, A., (Takagi, T.)
    • Journal Title

      J. Am. Soc. Info. Sci. Tech. 58 (1)

      Pages: 51-65

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Improving the performance of an SVM-based method for predicting protein-protein interactions2006

    • Author(s)
      Dohkan, S., Koike, A., Takagi, T.
    • Journal Title

      In Silico Biol. 6

      Pages: 48-48

    • Related Report
      2009 Final Research Report
  • [Journal Article] MetaGene: prokaryotic gene finding from environmental genome shotgun sequences2006

    • Author(s)
      Noguchi, H., Park, J., Takagi, T.
    • Journal Title

      Nucleic Acids Res. 34(19)

      Pages: 5623-5630

    • Related Report
      2009 Final Research Report
  • [Journal Article] Improving the performance of an SVM-based method for predicting protein-protein interactions2006

    • Author(s)
      Dohkan, S., (Takagi, T.)
    • Journal Title

      In Silico Biol. 6

      Pages: 48-48

    • Related Report
      2006 Annual Research Report
  • [Journal Article] MetaGene : prokaryotic gene finding from environmental genome shotgum sequences2006

    • Author(s)
      Noguchi, H., (Takagi, T.)
    • Journal Title

      Nucleic Acids Res. 34 (19)

      Pages: 5623-5630

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Extraction of gene-disease relations from medline using domain dictionaries and machine learning2006

    • Author(s)
      Chun Hong-woo, (Tsujii, J.)
    • Journal Title

      The Pacific Symposium on Biocomputing (PSB)

      Pages: 4-15

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Linguistic and biological annotations of biological interaction events2006

    • Author(s)
      Ohta, T., (Tsujii, J.)
    • Journal Title

      In the Proc. of The Fifth International Conference on Language Resource and Evaluation (LREC 2006)

      Pages: 1405-1408

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Subdomain adaptation of a POS tagger with a small corpus2006

    • Author(s)
      Tateisi, Y., (Tsjii, J.)
    • Journal Title

      In the Proc. of the HLT-NAACL BioNLP Workshop on Linking Natural Language and Biology

      Pages: 136-137

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Semantic retrieval for the accurate identification of relational concepts in massive textbases2006

    • Author(s)
      Miyao, Y., (Tsujii, J.)
    • Journal Title

      In the Proc. of COLING-ACL 2006

      Pages: 1017-1024

    • Related Report
      2006 Annual Research Report
  • [Journal Article] An intelligent search engine and GUI-based efficient MEDLINE search tool based on deep syntactic parsing2006

    • Author(s)
      Ohta, T., (Tsujii, J.)
    • Journal Title

      In the Proc. of the COLING/ACL 2006 Interactive Presentation Sessions

      Pages: 17-20

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Automatic construction of predicate-argument structure patterns for biomedical information extraction2006

    • Author(s)
      Yakushiji, A., (Tsujii, J.)
    • Journal Title

      In the Proc. of the 2006 Conference on Empirical Methods in Natural Language Processing

      Pages: 284-292

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Event Ontology : A Pathway-Centric Ontology for Biological Processes2006

    • Author(s)
      Kushida, T.
    • Journal Title

      Pacific Symposium on Biocomputing 11

      Pages: 152-163

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Extraction of Gene-Disease Relations from MedLine using Domain Dictionaries and Machine Learning2006

    • Author(s)
      Chun, H.W.
    • Journal Title

      In the Proc.of PSB2006

      Pages: 4-15

    • Related Report
      2005 Annual Research Report
  • [Journal Article] ALICE: An Algorithm to Extract Abbreviations from MEDLINE2005

    • Author(s)
      Ao, H., Takagi, T.
    • Journal Title

      JAMIA 12(5)

      Pages: 576-586

    • Related Report
      2009 Final Research Report
  • [Journal Article] Automatic Extraction of Gene/protein Biological Functions from Biomedical Text2005

    • Author(s)
      Koike, A., Niwa, Y., Takagi, T.
    • Journal Title

      Bioinformatics 21

      Pages: 1227-1236

    • Related Report
      2009 Final Research Report
  • [Journal Article] Biomedical Information Extraction with Predicate-Argument Structure Patterns, Proc2005

    • Author(s)
      Yakushiji, A., Miyao, Y., Tateisi, Y., Tsujii, J.
    • Journal Title

      1st Int. Symp. on Semantic Mining in Biomedicine

      Pages: 60-69

    • Related Report
      2009 Final Research Report
  • [Journal Article] Syntax Annotation for the GENIA corpus, Proc2005

    • Author(s)
      Tateisi, Y., Yakushiji, A., Ohta, T., Tsujii, J.
    • Journal Title

      IJCNLP 2005

      Pages: 222-227

    • Related Report
      2009 Final Research Report
  • [Journal Article] ALICE : An Algorithm to Extract Abbreviations from MEDLINE.2005

    • Author(s)
      Ao, H.
    • Journal Title

      Journal of American Medical Informatics Association 12(5)

      Pages: 576-586

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Reassembly and Interfacing Neural Models Registered on Biological Model Databases2005

    • Author(s)
      Ohtake, M.
    • Journal Title

      Genome Informatics Workshop

      Pages: 76-85

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A Sentence Classification System for Multi-document Summarization in the Biomedical Domain2005

    • Author(s)
      Yamamoto, Y.
    • Journal Title

      In the Proc.of International Workshop on Biomedical Data Engineering

      Pages: 90-95

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Automatic Extraction of Gene/protein Biological Functions from Biomedical Text2005

    • Author(s)
      Koike, A.
    • Journal Title

      Bioinformatics 21

      Pages: 1227-1236

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Biomedical Information Extraction with Predicate-Argument Structure Patterns2005

    • Author(s)
      Yakushiji, A.
    • Journal Title

      In the Proc.of 1st International Symposium on Semantic Mining in Biomedicine

      Pages: 60-69

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Syntax Annotation for the GENIA Corpus2005

    • Author(s)
      Tateisi, Y.
    • Journal Title

      In the Proc.of IJCNLP 2005

      Pages: 222-227

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A Machine Learning Approach to Acronym Generation2005

    • Author(s)
      Tsuruoka, Y.
    • Journal Title

      In the Proc.of ACL-ISMBL Workshop on Linking Biological Literature, Ontologies and Databases:

      Pages: 25-31

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Chunk Parsing Revisited2005

    • Author(s)
      Tsuruoka, Y.
    • Journal Title

      In the Proc.of IWPT 2005

      Pages: 133-140

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Probabilistic Disambiguation Models for Widecoverage HPSG Parsing2005

    • Author(s)
      Miyao, Y.
    • Journal Title

      In the Proc.of ACL2005

      Pages: 83-90

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Thesaurus or Logical Onotology, Which Do We Need for Mining Text?2005

    • Author(s)
      Tsujii, J.
    • Journal Title

      Language Resources and Evaluation 60(13)

      Pages: 77-90

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Knowledge Discovery Based on an Implicit and Explicit Conceptual Network

    • Author(s)
      Koike, A.
    • Journal Title

      Journal of the American Society for Information Science and Technology (in press)

    • Related Report
      2005 Annual Research Report
  • [Presentation] NaviCluster : Effective multi-scale graph navigation system powered by fast and biologically meaningful hierarchical clustering2010

    • Author(s)
      Praneenararat, T.
    • Organizer
      Asian Young Researchers Conference on Computational and Omics Biology
    • Place of Presentation
      Tainan City, Taiwan
    • Related Report
      2009 Annual Research Report
  • [Presentation] Biomedical figure search using combination of bag of keypoints and bag of words2009

    • Author(s)
      Koike, A. (Takagi, T. )
    • Organizer
      GIW2009
    • Place of Presentation
      横浜
    • Year and Date
      2009-12-15
    • Related Report
      2009 Final Research Report
  • [Presentation] Biomedical figure search using combination of bag of keypoints and bag of words2009

    • Author(s)
      Koike, A.
    • Organizer
      The 20th International Conference on Genome Informatics
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2009-12-15
    • Related Report
      2009 Annual Research Report
  • [Presentation] Classification of neuroimaging figures toward automatic figure annotation system2009

    • Author(s)
      Ishii, N. (Takagi, T. )
    • Organizer
      GIW2009
    • Place of Presentation
      横浜
    • Year and Date
      2009-12-14
    • Related Report
      2009 Final Research Report
  • [Presentation] Classification of neuroimaging figures toward automatic figure annotation system2009

    • Author(s)
      Ishii, N.
    • Organizer
      The 20th International Conference on Genome Informatics
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2009-12-14
    • Related Report
      2009 Annual Research Report
  • [Presentation] 生命科学研究者のための統合文献情報管理システム2009

    • Author(s)
      岩崎渉
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      横浜
    • Year and Date
      2009-12-10
    • Related Report
      2009 Final Research Report
  • [Presentation] 生命科学研究者のための統合文献情報管理システム2009

    • Author(s)
      岩崎渉
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2009-12-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] メダカ顔貌形状に関わる遺伝子座の探索に向けた量的形質の定量手法2009

    • Author(s)
      鈴志野康正(中谷明弘)
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2009-12-09
    • Related Report
      2009 Final Research Report
  • [Presentation] メダカ顔貌形状に関わる遺伝子座の探索に向けた量的形質の定量手法2009

    • Author(s)
      鈴志野康正
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2009-12-09
    • Related Report
      2009 Annual Research Report
  • [Presentation] 既知複合体立体構造データベースを利用したタンパク質-リガンド相互作用パターンの解析と結合様式予測手法の開発2009

    • Author(s)
      笠原浩太(高木利久)
    • Organizer
      日本薬学会第129年会
    • Place of Presentation
      京都
    • Year and Date
      2009-03-27
    • Related Report
      2008 Annual Research Report
  • [Presentation] Effective multi-scale graph navigation system powered by fast and biologically meaningful hierarchical clustering2009

    • Author(s)
      Praneenararat, T. (Takagi, T. )
    • Organizer
      GIW2009
    • Place of Presentation
      横浜
    • Related Report
      2009 Final Research Report
  • [Presentation] Effective multi-scale graph navigation system powered by fast and biologically meaningful hierarchical clustering2009

    • Author(s)
      Praneenararat, T.
    • Organizer
      The 20th International Conference on Genome Informatics
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Related Report
      2009 Annual Research Report
  • [Presentation] 既知複合体立体構造の知識に基づいたタンパク質-リガンド結合様式予測手法の開発2008

    • Author(s)
      笠原浩太(高木利久)
    • Organizer
      第31回情報化学討論会
    • Place of Presentation
      東京
    • Year and Date
      2008-11-13
    • Related Report
      2008 Annual Research Report
  • [Presentation] 既知タンパク質-リガンド複合体立体構造情報を利用した経験的結合様式予測手法の開発2008

    • Author(s)
      笠原 浩太(高木利久)
    • Organizer
      日本薬学会第128年会
    • Place of Presentation
      横浜
    • Year and Date
      2008-03-26
    • Related Report
      2007 Annual Research Report
  • [Presentation] 表現型進化と遺伝子進化を結ぶ統合データベースの構築2007

    • Author(s)
      星山 大介(高木利久)
    • Organizer
      第30回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-14
    • Related Report
      2007 Annual Research Report
  • [Presentation] 3D reconstruction of neuronal circuits by using synchrotron radiation X-ray micro-tomography2007

    • Author(s)
      Mizutani, H. (Takagi, T.)
    • Organizer
      Fall 2007 Janelia Conference: Neural Circuit Reconstruction
    • Place of Presentation
      Washington
    • Year and Date
      2007-09-25
    • Related Report
      2007 Annual Research Report
  • [Presentation] X線マイクロCT技術を用いた脳神経細胞の3次元再構築2007

    • Author(s)
      水谷 治央(高木利久)
    • Organizer
      第30回日本神経科学学会
    • Place of Presentation
      横浜
    • Year and Date
      2007-09-11
    • Related Report
      2007 Annual Research Report
  • [Presentation] 表現型進化と遺伝子進化を結ぶ統合データベースの構築2007

    • Author(s)
      星山 大介(高木利久)
    • Organizer
      日本進化学会第9回大会
    • Place of Presentation
      京都
    • Year and Date
      2007-09-01
    • Related Report
      2007 Annual Research Report
  • [Presentation] 大規模ゲノム比較によるゲノム進化解析法の開発2007

    • Author(s)
      岩崎 渉(高木利久)
    • Organizer
      日本進化学会第9回大会
    • Place of Presentation
      京都
    • Year and Date
      2007-08-31
    • Related Report
      2007 Annual Research Report
  • [Presentation] Reconstruction of highly heterogeneous gene-content evolution across the three domains of life2007

    • Author(s)
      Iwasaki, W.
    • Organizer
      ISMB/ECCB2007
    • Place of Presentation
      Wien
    • Year and Date
      2007-07-24
    • Related Report
      2009 Final Research Report 2007 Annual Research Report
  • [Presentation] A prototype platform for flexible comparison analyses of interactions and pathways2007

    • Author(s)
      Fukagawa, H. (Takagi, T. )
    • Organizer
      ISMB/ECCB2007
    • Place of Presentation
      Wien
    • Year and Date
      2007-07-22
    • Related Report
      2009 Final Research Report 2007 Annual Research Report
  • [Presentation] Maximum likelihood estimation of ancestral gene content over the universal tree of life2007

    • Author(s)
      Iwasaki, W. (Takagi, T.)
    • Organizer
      PSB2007
    • Place of Presentation
      Hawaii
    • Year and Date
      2007-01-05
    • Related Report
      2007 Annual Research Report
  • [Presentation] Pseudo-clique extraction method towards comprehensive clustering of orthologous genes in KEGG2007

    • Author(s)
      Nakaya, A.
    • Organizer
      The 2007 Annual Conference of Japanese Society for Bioinformatics
    • Place of Presentation
      東京
    • Related Report
      2007 Annual Research Report
  • [Book] 医学生物学分野におけるシソーラスとテキストマイニング技術の開発(実験医学増刊号)2008

    • Author(s)
      小池麻子(高木利久)
    • Total Pages
      6
    • Publisher
      羊土社
    • Related Report
      2009 Final Research Report
  • [Book] 医学生物学分野におけるシソーラスとテキストマイニング技術の開発(実験医学増刊号 Vol.26, No.7)2008

    • Author(s)
      小池 麻子(高木利久)
    • Total Pages
      6
    • Publisher
      羊土社
    • Related Report
      2007 Annual Research Report
  • [Book] Genome Informatics 20052005

    • Author(s)
      Edited by Takagi, T. et al.
    • Total Pages
      293
    • Publisher
      Universal Academy Press, Inc.
    • Related Report
      2005 Annual Research Report
  • [Remarks] MCTDB: Medaka Craniofacial Trait Database

    • URL

      http://medaka.cb.k.u-tokyo.ac.jp/mctdb/

    • Related Report
      2009 Final Research Report
  • [Remarks] BioTermNet

    • URL

      http://btn.ontology.ims.u-tokyo.ac.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] OReFiL

    • URL

      http://orefil.dbcls.jp/

    • Related Report
      2009 Final Research Report
  • [Remarks] PIPS

    • URL

      http://prime.ontology.ims.u-tokyo.ac.jp:8081/cgi-bin/PIPS.cgi

    • Related Report
      2009 Final Research Report
  • [Remarks] McSyBi

    • URL

      http://textlens.hgc.jp/McSyBi/index.html

    • Related Report
      2009 Final Research Report
  • [Remarks] GENA

    • URL

      http://gena.ontology.ims.u-tokyo.ac.jp:8081/search

    • Related Report
      2009 Final Research Report
  • [Remarks] Multiple Ontology Viewer

    • URL

      http://gena.ontology.ims.u-tokyo.ac.jp:8081/mov

    • Related Report
      2009 Final Research Report
  • [Remarks] MEDLINE全体のテキストをEnjuで解析した結果。リクエスト先メールアドレス

    • Related Report
      2009 Final Research Report
  • [Remarks] GENIA Treebank

    • URL

      http://www-tsujii.is.s.u-tokyo.ac.jp/GENIA/topics/Corpus/GTB.html

    • Related Report
      2009 Final Research Report
  • [Remarks] ALICE

    • URL

      http://uvdb3.hgc.jp/ALICE/ALICE_index.html

    • Related Report
      2009 Final Research Report
  • [Remarks] BioTermNet:明示的/潜在的な概念間の関係性のネットワークの可視化

    • URL

      http://btn.ontology.ims.u-tokyo.ac.jp/

    • Related Report
      2009 Annual Research Report
  • [Remarks] OReFiL:インターネット上のデータベースやツールなどの検索システム

    • URL

      http://orefil.dbcls.jp/

    • Related Report
      2009 Annual Research Report
  • [Remarks] MCTDB:メダカの顔貌形質(craniofacial trait)の画像データベース

    • URL

      http://medaka.cb.k.u-tokyo.ac.jp/mctdb/

    • Related Report
      2009 Annual Research Report
  • [Remarks] BioTermNet : 明示的/潜在的な概念間の関係性のネットワークの可視化

    • URL

      http://btn.ontology.ims.u-tokyo.ac.jp/

    • Related Report
      2008 Annual Research Report
  • [Remarks] OReFiL : インターネット上のデータベースやツールなどの検索システム

    • URL

      http://orefil.dbcls.jp/

    • Related Report
      2008 Annual Research Report
  • [Remarks] MCTDB : メダカの顔貌形質(craniofacial trait)の画像データベース

    • URL

      http://medaka.cb.k.u-tokyo.ac.jp/mctdb/

    • Related Report
      2008 Annual Research Report
  • [Remarks] BioTermNet:明示的/潜在的な概念間の関係性のネットワークの可視化

    • URL

      http://btn.ontology.ims.u-tokyo.ac.jp/

    • Related Report
      2007 Annual Research Report
  • [Remarks] OReFiL:インターネット上のデータベースやツールなどの検索システム

    • URL

      http://orefil.dbcls.jp/

    • Related Report
      2007 Annual Research Report

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Published: 2005-04-01   Modified: 2018-03-28  

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