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Iron-sulfur cluster biosynthesis : Molucular mechanism of the assembly of intermediate cluster and its transfer to apo proteins.

Research Project

Project/Area Number 17570112
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionOsaka University

Principal Investigator

TAKAHASHI Yasuhiro  Osaka University, Graduate School of Science, Lecturer, 理学研究科, 講師 (10154874)

Co-Investigator(Kenkyū-buntansha) FUKUYAMA Keiichi  Osaka University, Graduate School of Science, Professor, 理学研究科, 教授 (80032283)
Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2006: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 2005: ¥2,300,000 (Direct Cost: ¥2,300,000)
Keywordsiron-sulfur cluster / iron-sulfur protein / biosynthesis / gene / protein / molecular chaperone / X-ray crystal structure / 鉄硫黄蛋白質 / 蛋白質
Research Abstract

Iron-sulfur (Fe-S) proteins are present in almost all living organisms and exhibit diverse functions, which include electron transport, redox and non-redox catalysis, and sensing for regulatory processes. They contain clusters of iron and sulfur atoms with variable complexity, such as [2Fe-2S], [3Fe-4S], and [4Fe-4S] clusters. We have recently found two independent systems, called ISC and SUF, essential for the biosynthesis of Fe-S clusters, although still very little is known about the mechanistic details. In this study we have focused on IcsU, a central key player of the ISC machinery working as a scaffold for a nascent Fe-S cluster, and undertaken genetic, biochemical and structural approaches to elucidate the complex mechanism by which the Fe-S clusters are assembled and transferred to target proteins.
1. We have isolated and analyzed 14 psuedorevertants generated from a mutant strain lacking HscA and HscB of the ISC machinery, and found that the responsible suppressor mutations are all located in IscU. The mutated IscUs were conformationally altered from WT IscU at the secondary structure level, suggesting that, in wild-type cells, HscA and HscB induce the structural changes of IscU thereby facilitating the cluster transfer from IscU to target proteins.
2. In contrast to the notoriously unstable Fe-S cluster intermediate in the scaffold proteins, we found that the IscU homolog from the hyperthermophilic bacterium Aquifex aeolicus (AaIscU) carries a stable Fe-S cluster. AaIscU was purified, characterized and crystallized for the first time under anaerobic conditions. The crystal structure has revealed that the holo-AaIscU is an asymmetric trimer carrying only one [2Fe-2S] cluster at the interface between two structurally altered protomers. The structure of the asymmetric trimer provides valuable insight into the molecular event: the assembly, maintenance and transfer of the nascent Fe-S cluster is tightly coupled to the conversion of the oligomeric state of IscU.

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (20 results)

All 2006 2005

All Journal Article (20 results)

  • [Journal Article] Crystal structure of PcyA in complex with biliverdin IX α, a key enzyme in biosynthesis of phycocyanobilin2006

    • Author(s)
      Yoshinori Hagiwara
    • Journal Title

      Proc.Natl.Acad.Sci.USA 103・1

      Pages: 27-32

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystal structure of Escherichia coli SufC, an ABC-type ATPase component of the SUF iron-sulfur cluster assembly machinery2006

    • Author(s)
      Shintaro Kitaoka
    • Journal Title

      FEBS Lett. 580・1

      Pages: 137-143

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] Induced-fitting and electrostatic potential change of PcyA upon substrate binding demonstrated by the crystal structure of the substrate-free form2006

    • Author(s)
      Yoshinori Hagiwara
    • Journal Title

      FEBS Lett. 580・1

      Pages: 3823-3828

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary x-ray crystallographic studies of the oxidative-stress sensor SoxR and its complex with DNA2006

    • Author(s)
      Satoshi Watanabe
    • Journal Title

      Acta Cryst. F62

      Pages: 3823-3828

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] フェレドキシン依存性ビリン還元酵素の構造研究2006

    • Author(s)
      杉島正一
    • Journal Title

      日本結晶学会誌 48

      Pages: 280-289

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Crystal structure of PcyA in complex with biliverdin IX α, a key enzyme in biosynthesis of phycocyanobilin.2006

    • Author(s)
      Yoshinori Hagiwara
    • Journal Title

      Proc.Natl.Acad.Sci.USA 103-1

      Pages: 27-32

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystal structure of Escherichia coli SufC, an ABC-type ATPase component of the SUF iron-sulfur cluster assembly machinery.2006

    • Author(s)
      Shintaro Kitaoka
    • Journal Title

      FEBS Lett. 580-1

      Pages: 137-143

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Induced-fitting and electrostatic potential change of PcyA upon substrate binding demonstrated by the crystal structure of the substrate-free form.2006

    • Author(s)
      Yoshinori Hagiwara
    • Journal Title

      FEBS Lett. 580-1

      Pages: 3823-3828

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary X-ray crystallographic studies of the oxidative-stress sensor SoxR and its complex with DNA.2006

    • Author(s)
      Satoshi Watanabe
    • Journal Title

      Acta Cryst. F62

      Pages: 3823-3828

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Structural study of ferredoxin-dependent bilin reductase.2006

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      J.Cryst.Soc.Jpn 48-4

      Pages: 280-289

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary X-ray crystallographic studies of the oxidative-stress sensor SoxR and its complex with DNA2006

    • Author(s)
      Satoshi Watanabe
    • Journal Title

      Acta Cryst. F62

      Pages: 3823-3828

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Crystal structure of PcyA in complex with biliverdin IX α, a key enzyme in biosynthesis of phycocyanobilin2006

    • Author(s)
      Yoshinori Hagiwara
    • Journal Title

      Proc. Natl. Acad. Sci. USA 103・1

      Pages: 27-32

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Crystal Structure of Escherichia coli YfhJ Protein, a Member of the ISC Machinery Involved in Assembly of Iron-Sulfur Clusters2005

    • Author(s)
      Yoshimitsu Shimomura
    • Journal Title

      PROTEINS Structure, Function, and Bioinformatics 60・3

      Pages: 566-569

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Identification of variant molecules of Bacillus thermoproteolyticus ferredoxin : Crystal structure reveals bound coenzyme A and an unexpected [3Fe-4S]cluster associated with acanonical[4Fe-4S]ligand motif2005

    • Author(s)
      Tadayoshi Shirakawa
    • Journal Title

      Biochemistry 44・37

      Pages: 12402-12410

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystal Structure of Escherichia coli SufA Involved in Biosynthesis of Iron-sulfur Clusters : Implications for a functional dimer2005

    • Author(s)
      Kei Wada
    • Journal Title

      FEBS Lett. 579・29

      Pages: 6543-6548

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] Crystal Structure of Escherichia coli YfhJ Protein, a Member of the ISC Machinery Involved in Assembly of Iron-Sulfur Clusters.2005

    • Author(s)
      Yoshimitsu Shimomura
    • Journal Title

      PROTEINS Structure, Function, and Bioinformatics 60-3

      Pages: 566-569

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Identification of variant molecules of Bacillus thermoproteolyticus ferredoxin : Crystal structure reveals bound coenzyme A and an unexpected [3Fe-4S] cluster associated with a canonical [4Fe-4S] ligand motif.2005

    • Author(s)
      Tadayoshi Shirakawa
    • Journal Title

      Biochemistry 44-37

      Pages: 12402-12410

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystal Structure of Escherichia coli SufA Involved in Biosynthesis of Iron-sulfur Clusters : Implications for a functional dimer.2005

    • Author(s)
      Kei Wada
    • Journal Title

      FEBS Lett. 579-29

      Pages: 6543-6548

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystal Structure of Escherichia coli YfhJ Protein, a Member of the ISC Machinery Involved m Assembly of Iron-Sulfur Clusters2005

    • Author(s)
      Yoshimitsu Shimomura
    • Journal Title

      PROTEINS Structure, Function, and Bioinformatics 60・3

      Pages: 566-569

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Identification of variant molecules of Bacillus thermoproteolyticus ferredoxin : Crystal structure reveals bound coenzyme A and an unexpected [3Fe-4S] cluster associated with a canonical [4Fe-4S] ligand motif2005

    • Author(s)
      Tadayoshi Shirakawa
    • Journal Title

      Biochemistry 44・37

      Pages: 12402-12410

    • Related Report
      2005 Annual Research Report

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Published: 2005-04-01   Modified: 2016-04-21  

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