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Topology of configuration space model for viewing flow lines of flexible molecules

Research Project

Project/Area Number 17K05366
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Foundations of mathematics/Applied mathematics
Research InstitutionKochi University

Principal Investigator

Komatsu Kazushi  高知大学, 教育研究部自然科学系理工学部門, 教授 (00253336)

Co-Investigator(Kenkyū-buntansha) 後藤 了  東京理科大学, 薬学部生命創薬科学科, 教授 (50253232)
江居 宏美  弘前大学, 理工学研究科, 准教授 (60333051)
Project Period (FY) 2017-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2021: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2020: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2019: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2018: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2017: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Keywords数理モデル / 配置空間 / トポロジー / 折り変形 / フレームワーク / チェイン / 多面体的曲面 / 多面体的アニュラス / 数理モ デ ル / 応用トポロジー
Outline of Final Research Achievements

When n is small, a chain model of n-membered ring hydrocarbon molecules was given and the topology of the model's configuration space was studied. In this research project, we extend to the case where n is large, and obtain the following results. We consider the configuration space of equilateral polygons in 3-dim Euclid space whose bond angles are equal a fixed angle except for two successive ones. We obtain that when the fixed angle is suffiently close to the inner angle of the regular polygon, the configuration space is homeomorphic to the sphere with the corresponding dimension.
To explore the possibility of approximating large macrocyclic molecules with small molecules, we have obtained the following results.we consider a kind of polyhedral surfaces obtained by attaching egular pentagons called a regular pentagon ring. We obtain that if a regular pentagon ring is on a plane, it can be folded in one regular pentagon.

Academic Significance and Societal Importance of the Research Achievements

立体構造の変位を許す分子においては,その立体構造の違いによってもつ化学的な性質が異なる場合があることが知られている.このような変形可能な幾何学的構造をもつ数理モデルを考え,その取り得る形状全体からなる配置空間を考えることで,変形の様子の動線を明らかにすることができる.小さな幾何学的構造で得られた結果を大きな幾何学的構造に拡張することは,分子の場合はタンパク質などの大きな分子への応用が得られることを意味する。

Report

(6 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (12 results)

All 2022 2021 2020 2019 2018 2017

All Journal Article (12 results) (of which Peer Reviewed: 12 results,  Open Access: 7 results)

  • [Journal Article] 球面タイル貼りを用いた「しぼり」をもつ球形曲線折り2022

    • Author(s)
      小松和志, 星志津李
    • Journal Title

      Scientific and Educational Reports of the Faculty of Science and Technology, Kochi University

      Volume: 5

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] キューブ・リングについての考察 (On Cube・rings)2021

    • Author(s)
      小松和志, 靜川早希
    • Journal Title

      Scientific and Educational Reports of the Faculty of Science and Technology, Kochi University

      Volume: 4

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The configuration space of almost regular polygons2020

    • Author(s)
      Goto Satoru, Komatsu Kazushi, and Yagi Jun
    • Journal Title

      Hiroshima Mathematical Journal

      Volume: 50 Pages: 185-197

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Journal Article] On folding of planar regular pentagon rings2020

    • Author(s)
      Hiromi Ei, Hiroko Hayashi and Kazushi Komatsu
    • Journal Title

      Nihonkai Mathematical Journal

      Volume: 31 Pages: 45-58

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Journal Article] Candy wrapping paper principle2019

    • Author(s)
      Kazushi Komatsu, Atsuki Hiraguchi and Masatoshi Morimoto
    • Journal Title

      Scientific and Educational Reports of the Faculty of Science and Technology, Kochi University

      Volume: 2 Pages: 7-7

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] ものづくり幾何教材を用いた小学校における授業の設計と実践例2019

    • Author(s)
      河内美智,久保田典子,小松和志,筒井公平
    • Journal Title

      Scientific and Educational Reports of the Faculty of Science and Technology, Kochi University

      Volume: 2 Pages: 11-11

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Strongly nonperiodic hyperbolic tilings using single vertex configuration2018

    • Author(s)
      Ahara Kazushi、Akiyama Shigeki、Hayashi Hiroko、Komatsu Kazushi
    • Journal Title

      Hiroshima Mathematical Journal

      Volume: 48 Issue: 2 Pages: 133-140

    • DOI

      10.32917/hmj/1533088825

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] n回対称性をもつ準結晶構造の数学的モデルから得られる教材の開発とその活用2018

    • Author(s)
      小松和志,山内昌哲
    • Journal Title

      高知大学理工学部紀要

      Volume: 1 Pages: 4-4

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 正5角形リングパズル(Regular pentagon ring puzzle)2018

    • Author(s)
      江居宏美,林浩子,小松和志
    • Journal Title

      高知大学理工学部紀要

      Volume: 1 Pages: 6-6

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 偶数枚の直角二等辺三角形パネルから成る多面体的アニュラスのリバーシブルについて2018

    • Author(s)
      江居宏美,小松和志,山内昌哲
    • Journal Title

      高知大学理工学部紀要

      Volume: 1 Pages: 7-7

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Melting Process of the Peritectic Mixture of Lidocaine and Ibuprofen Interpreted by Site Percolation Theory Model2017

    • Author(s)
      Kataoka Hikaru、Sakaki Yoshinori、Komatsu Kazushi、Shimada Yohsuke、Goto Satoru
    • Journal Title

      Journal of Pharmaceutical Sciences

      Volume: 106 Issue: 10 Pages: 3016-3021

    • DOI

      10.1016/j.xphs.2017.04.010

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] The squared chain length function of 5 or 6-membered straight-chains with tetrahedral bond angle2017

    • Author(s)
      Kazushi Komatsu
    • Journal Title

      Nihonkai Mathematical Journal

      Volume: 28 Pages: 89-98

    • Related Report
      2017 Research-status Report
    • Peer Reviewed

URL: 

Published: 2017-04-28   Modified: 2023-01-30  

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