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Unravelling fundamental interactions underlying the rotation mechanism of F1-ATPase

Research Project

Project/Area Number 17K05562
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Mathematical physics/Fundamental condensed matter physics
Research InstitutionTohoku University

Principal Investigator

SASAKI Kazuo  東北大学, 工学研究科, 教授 (50205837)

Co-Investigator(Kenkyū-buntansha) 吉留 崇  東北大学, 工学研究科, 助教 (90456830)
Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2019: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2018: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2017: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
KeywordsF1-ATPase / 化学状態 / 相互作用ポテンシャル / ポアソン過程 / 統計解析 / 回転子・固定子相互作用 / 回転スリップ / タンパク質分子モーター / 拡散増大 / 統計力学 / 分子機械 / 生体分子 / 1分子計測
Outline of Final Research Achievements

The rotor of a protein motor F1-ATPase can be forcefully rotated by manipulating a magnetic field if a magnetic nanoparticle is attached to the rotor. An algorithm is proposed that can infer the fundamental interaction producing the rotational motion of this motor, by statistically analyzing a time course of the rotation angle of the rotor obtained experimentally. A similar algorithm proposed earlier failed to infer the interaction in certain rages of rotation angle. In contrast, our algorithm successfully inferred it in the whole rage of the angle in the analysis of time courses produced by computers based on a theoretical model of F1-ATPase.

Academic Significance and Societal Importance of the Research Achievements

私たちの体の中でエネルギーを蓄える普遍的な分子であるATPの合成に関わるタンパク質F1-ATPaseは,回転の力学的エネルギーを化学エネルギー変換することでATPを合成する.本研究成果により,F1-ATPaseが高いエネルギー変換効率で効率的に働く仕組みを解明するために必要な物理学的情報を,実験データから獲得するための道が開かれた.

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (20 results)

All 2019 2018 2017

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (16 results) (of which Int'l Joint Research: 4 results)

  • [Journal Article] Enhanced Diffusion in a Model of Molecular Motors with Potential Switching2019

    • Author(s)
      Ryota Shinagawa and Kazuo Sasaki
    • Journal Title

      Fluctuation and Noise Letters

      Volume: 18 Issue: 02 Pages: 1940005-1940005

    • DOI

      10.1142/s0219477519400054

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] A Unified Walking Model for Dimeric Motor Proteins2018

    • Author(s)
      Kazuo Sasaki, Motoshi Kaya, and Hideo Higuchi
    • Journal Title

      Biophysical Journal

      Volume: 115 Pages: 1981-1992

    • NAID

      130007648128

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Diffusion enhancement of Brownian motors revealed by a solvable model2018

    • Author(s)
      Ryo Kanada, Ryota Shinagawa, and Kazuo Sasaki
    • Journal Title

      Physical Review E

      Volume: 98 Issue: 6 Pages: 062110-062110

    • DOI

      10.1103/physreve.98.062110

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] An Automatic Classification of Molecular Dynamics Simulation Data into States, and Its Application to the Construction of a Markov State Model2018

    • Author(s)
      Reika Ito and Takashi Yoshidome
    • Journal Title

      Journal of the Physical Society of Japan

      Volume: 87 Issue: 11 Pages: 114802-114802

    • DOI

      10.7566/jpsj.87.114802

    • NAID

      210000135024

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Presentation] Some Exact Results on Diffusion Coefficients for Models Associated with Motor Proteins2019

    • Author(s)
      Kazuo Sasaki, Ryo Kanada, Ryota Shinagawa, and Kohei Toya
    • Organizer
      XXVI Sitges Conference on Statistical Mechanics
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Model of collective motion of filaments crawling on a surface2019

    • Author(s)
      Ryota Shinagawa and Kazuo Sasaki
    • Organizer
      27th International Conference on Statistical Physics of the International Union for Pure and Applied Physics
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ラチェット系における拡散増大の first-passage time 解析2019

    • Author(s)
      佐々木一夫,金田亮,品川遼太
    • Organizer
      日本物理学会 2019 年秋季大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] KIF1A/UNC-104 によるシナプス小胞前駆体輸送の数理モデル2019

    • Author(s)
      佐々木瞭,品川遼太,稗田康洋,佐々木一夫,丹羽伸介,林久美子
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] KIF1A/UNC-104 によるシナプス小胞前駆体輸送の数理モデル2019

    • Author(s)
      佐々木瞭,品川遼太,稗田康洋,佐々木一夫,丹羽伸介,林久美子
    • Organizer
      日本生物物理学会東北支部会2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] 分子モーターに駆動された微小管の二体衝突のシミュレーション2019

    • Author(s)
      品川遼太,佐々木一夫
    • Organizer
      2019年 生体運動研究合同班会議
    • Related Report
      2018 Research-status Report
  • [Presentation] 拡張ポアソン歩行と拡散増大2019

    • Author(s)
      佐々木一夫,金田亮,品川遼太
    • Organizer
      日本物理学会第74回年次大会
    • Related Report
      2018 Research-status Report
  • [Presentation] 有限な長さを持つ自己駆動系による微小管集団運動のシミュレーション2019

    • Author(s)
      品川遼太,佐々木一夫
    • Organizer
      日本物理学会第74回年次大会
    • Related Report
      2018 Research-status Report
  • [Presentation] Enhanced diffusion in a model of molecular motors with potential switching2018

    • Author(s)
      Ryota Shinagawa and Kazuo Sasaki
    • Organizer
      UPoN 2018, 80th International Conference on Unsolved Problems on Noise
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 広い負荷領域の測定から明らかになったキネシン1分子のステップ運動2018

    • Author(s)
      近藤雄一,佐々木一夫,樋口秀男
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] 微小管の滑り運動における進行方向の長時間シミュレーション2018

    • Author(s)
      品川遼太,佐々木一夫
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] アクチンの滑り運動に関する理論モデルの厳密解2018

    • Author(s)
      鳥谷康平,佐々木一夫
    • Organizer
      生物物理学会東北支部会2018
    • Related Report
      2018 Research-status Report
  • [Presentation] 強制回転状態にある分子モーターのトラジェクトリを用いた動作機構の推定法2018

    • Author(s)
      鳥谷康平,佐々木一夫
    • Organizer
      生物物理学会東北支部会2018
    • Related Report
      2018 Research-status Report
  • [Presentation] 強制回転による分子モーターの動作機構の究明2018

    • Author(s)
      支倉雄一,佐々木一夫
    • Organizer
      日本物理学会第73回年次大会
    • Related Report
      2017 Research-status Report
  • [Presentation] Enhanced diffusion of chemically driven molecular motors2017

    • Author(s)
      Ryota Shinagawa and Kazuo Sasaki
    • Organizer
      SigmaPhi 2017 (International Conference on Statistical Physics of European Physical Society)
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] 拡散係数の増大を用いた F1-ATPase の遷移率の解析2017

    • Author(s)
      品川遼太,佐々木一夫
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Research-status Report

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Published: 2017-04-28   Modified: 2021-02-19  

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