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Contribution of higher-order structure transition of giant DNA on gene expression efficiency

Research Project

Project/Area Number 17K05615
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biological physics/Chemical physics/Soft matter physics
Research InstitutionDoshisha University

Principal Investigator

KENMOTSU Takahiro  同志社大学, 生命医科学部, 教授 (10389009)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2019: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2018: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2017: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Keywords長鎖DNA / 遺伝子発現活性 / 高次構造転移 / DNA一分子観察 / 蛍光顕微鏡 / ポリアミン / DNA高次構造転移 / DNA高次構造 / 遺伝子発現 / 生体ポリアミン / 対イオン凝縮 / イオン交換過程 / ゲノムサイズDNA / 生物物理
Outline of Final Research Achievements

I have studied a contribution for gene expression efficiency by higher-order structure transition of giant DNA. I have found that an enhancement of gene expression efficiency result in a conformation of giant DNA just before globule state. This mean that the enhancement is due to the parallel ordering of DNA segments. Meanwhile, an inhibition on gene expression is caused by the compaction of DNA into a tightly packed state. Based on experimental and theoretical results, I have revealed that higher-order transition of giant DNA work as a switch on gene expression efficiency, enhancement and inhibition.

Academic Significance and Societal Importance of the Research Achievements

これまで、長鎖DNAの高次構造転移が遺伝子発現活性にどのように寄与しているのかについては明らかにされいなかったが、本研究によって、DNA高次構造転移が遺伝子発現活性のON/OFFスイッチング機構として働くことを明らかにした。本研究で明らかとなった知見は、がんの発生メカニズムなど、生命科学および医学の基礎的な知見となることが期待される。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (14 results)

All 2020 2019 2018 2017 Other

All Int'l Joint Research (1 results) Journal Article (2 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 2 results,  Open Access: 1 results) Presentation (10 results) (of which Int'l Joint Research: 3 results,  Invited: 3 results) Remarks (1 results)

  • [Int'l Joint Research] City University of New York(米国)

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Low-efficiency of gene expression with a long diamine is attributable to the effect on DNA zipping2020

    • Author(s)
      Hiroko Tanaka, Chwen-Yang Shew, Yuko Yoshikawa, Takahiro Kenmotsu, Kenichi Yoshikawa
    • Journal Title

      Chemical Physics Letters

      Volume: 745 Pages: 137253-137259

    • DOI

      10.1016/j.cplett.2020.137253

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Opposite effect of polyamines on In vitro gene expression: Enhancement at low concentrations but inhibition at high concentrations2018

    • Author(s)
      Kanemura Ai、Yoshikawa Yuko、Fukuda Wakao、Tsumoto Kanta、Kenmotsu Takahiro、Yoshikawa Kenichi
    • Journal Title

      PLOS ONE

      Volume: 13 Issue: 3 Pages: e0193595-e0193595

    • DOI

      10.1371/journal.pone.0193595

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 2価ポリアミンが引き起こす遺伝子発現の促進と抑制:アミノ基間の炭素鎖長の重要性2019

    • Author(s)
      田中寛子、Chwen-Yang SHEW、吉川祐子、剣持貴弘、吉川研一
    • Organizer
      生物物理学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ポリアミンによる遺伝子発現の促進・抑制の二面性: D NA 高次構造変化との相関2019

    • Author(s)
      北川智規、 西尾天志、吉川祐子、剣持貴弘、梅澤直樹 、 吉川研一
    • Organizer
      ポリアミン学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Biphasic effect of polyamine, enhancement and inhibition, on gene expression in vitro: Experimental observation and theoretical modeling2018

    • Author(s)
      Takahiro Kenmotsu, Yuko Yoshikawa, Kenichi Yoshikawa
    • Organizer
      BIT’s 9th World Gene Convention-2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] ouble-strand breaks in genome-size DNA caused by photo-irradiation, gamma-rays and ultrasound2018

    • Author(s)
      Takahiro Kenmotsu, Yue Ma, Moe Usui, Yuko Yoshikawa, Kenichi Yoshikawa
    • Organizer
      The 37th JSST Annual International Conference on Simulation Technology
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 多価カチオンによるDNAの折り畳み転移:2価と3価の拮抗的作用の謎に迫る2018

    • Author(s)
      剣持 貴弘,吉川 祐子,吉川 研一
    • Organizer
      理論化学討論会
    • Related Report
      2018 Research-status Report
  • [Presentation] 種々のポリアミンによる遺伝子発現活性制御2018

    • Author(s)
      田中 寛子, 吉川 祐子, 梅澤 直樹, 剣持 貴弘, 吉川 研一
    • Organizer
      生物物理学会
    • Related Report
      2018 Research-status Report
  • [Presentation] Biphasic effect of polyamine, enhancement and inhibition, on gene expression in vitro: Experimental observation and theoretical modeling2018

    • Author(s)
      Takahiro Kenmotsu, Yuko Yoshikawa, and Kenichi Yoshikawa
    • Organizer
      BIT’s 9th World Gene Convention-2018
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Dual effect of polyamines on gene expression: Acceleration and inhibition2017

    • Author(s)
      Ai Kanemura, Yuko Yoshikawa, Takahiro Kenmotsu, Wakao Fukuda, Kenichi Yoshikawa
    • Organizer
      日本生物物理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] Structure and function of DNA in the presence of linear-chain polyamines with a valency from 2+ to 5+2017

    • Author(s)
      Hiroko Tanaka, Ai Kanemura, Yuko Yoshikawa, Naoki Umezawa, Takahiro Kenmotsu, Kenichi Yoshikawa
    • Organizer
      日本生物物理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] 遺伝子発現におけるポリアミンの促進と阻害の二面性2017

    • Author(s)
      金村愛,吉川祐子,福田青郎,湊元幹太,剣持貴弘,吉川研一
    • Organizer
      日本ポリアミン学会年会
    • Related Report
      2017 Research-status Report
  • [Remarks] 同志社大学 生命医科学部 生命物理科学研究室

    • URL

      http://dmpl.doshisha.ac.jp/

    • Related Report
      2019 Annual Research Report 2017 Research-status Report

URL: 

Published: 2017-04-28   Modified: 2021-02-19  

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