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Structural analysis for enzymatic activity of sphingomyelinase from Bacillus cereus

Research Project

Project/Area Number 18590441
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Bacteriology (including Mycology)
Research InstitutionTokushima Bunri University

Principal Investigator

SAKURAI J.  Tokushima Bunri University, Fac. Pharm. Sci., Full Professor (80029800)

Co-Investigator(Kenkyū-buntansha) KOBAYASHI Keiko  Tokushima Bunri University, Fac. Pharm. Sci., assistant Professor (90170315)
ODA M.  Tokushima Bunri University, Fac. Pharm. Sci., assistant Professor (00412403)
Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥4,010,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥510,000)
Fiscal Year 2007: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2006: ¥1,800,000 (Direct Cost: ¥1,800,000)
KeywordsBacillus cereus / sphingomyelinase / hemolytic activity / structural analysis / divalent cation / cleft / 3D structure / neutral SMase / セレウス菌 / スフィンゴミエリン / アミノ酸置換
Research Abstract

Neutral sphingomyelinase (nSMase) has been implicated in the generation of second messengers in mammalian cells. Bacillus cereus Smase (Bc-SMase) mimics the action of the endogenous mammalian nSMase in causing differentiation, development aging and apoptosis. The enzymatic activity of Bc-SMase was activated in the order of Co^<2+> > Mg^<2+> >> Ca^<2+>. The crystal structures of Bc-Smase with these metal ions were determined. The water-bridged twin divalent metal ions, Co^<2+> and Mg^<2+>, at the center of cleft were concluded to be the catalytic architecture to exert the sphingomyelinase activity. On the other hands, the architecture of Ca^<2+> binding at the site was different from that of Ca^<2+> and Mg^<2+>. The other binding site of these metal ions was at one side edge of the cleft. The crystal structure of the enzyme with Mg^<2+> or Co^<2+> at the site provides the universal structure bases for the hydrolytic activity of nSMase. In addition, the structural features and site-directed mutagenesis suggest that the specific-hairpin with the aromatic amino acid residues, the new active site, involves in binding to SM and membrane SM.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (22 results)

All 2008 2007 2006

All Journal Article (15 results) (of which Peer Reviewed: 6 results) Presentation (6 results) Book (1 results)

  • [Journal Article] The relationship between the metabolism of sphingomyelin species and hemolysis of sheep erythrocytes induced by Clostridium perfringens alpha-toxin2008

    • Author(s)
      M.Oda, T.Matsuno, R.Shiihara, S.Ochi, R.Yamauchi, Y.Saito, H.Imagawa, M.Nagahama, M.Nishizawa and J.Sakurai
    • Journal Title

      J.Lipid Res. (In press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] The relationship between the metabolism of sphingomyelin species and hemolysis of-sheep erythrocytes induced by Clostridium pelfringens alpha-toxin.2008

    • Author(s)
      M. Oda, T. Matsuno, R. Shiihara, S. Ochi, R. Yamauchi, Y. Saito, H. Imagawa, M. Nagahama, M. Nishizawa, J. Sakurai.
    • Journal Title

      J. Lipid Res. (In press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Involvement of tumour necrosis factor-a in Closttidium perfringens β-toxin-induced plasma extravasation in mice2008

    • Author(s)
      M.Nagahama, A.Kihara, H.Kintoh, M.Oda and J.Sakurai
    • Journal Title

      British Journal of Pharmacology 153

      Pages: 1296-1302

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The relationship between the metabolism of sphingomyelin species and hemolysis of sheep erythrocytes in duced by Clostridium perfringen alpha-toxin2008

    • Author(s)
      M.Oda, T.Matsuno, R.Shiihara, S.Ochi, R.Yamauchi, Y.Saito, H.Imagawa, M.Nagahama, M.Nishizawa and J.Sakural
    • Journal Title

      J.Lipid Res (In press)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of unsaturated bonds in the sn-2 acyl chain of phosphatidyl-choline on the membrane-damaging action of Clostridium perfringens alpha-toxin toward liposomes2007

    • Author(s)
      M.Nagahama, A.Otsuka, M.Oda, R.K.Singh, Z.M.Zyta, H.Imagawa, M.Nishizawa, and J.Sakurai
    • Journal Title

      Biochim.Biophys.Acta-Biomembrane 1768

      Pages: 2940-2945

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Effect of unsaturated bonds in the sn-2 acyl chain of phosphatidylcholine on the membrane-damaging action of Clostridium perfringens alpha-toxin toward liposomes.2007

    • Author(s)
      M. Nagahama, A. Otsuka, M. Oda, R. K. Singh, Z. M. Zyta, H. Imagawa, M. Nishizawa, J. Sakurai
    • Journal Title

      Biochim. Biophys. Acta 1768

      Pages: 2940-2945

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Effect of unsaturated bonds in the sn-2 acyl chain of phosphatidylcholine on the membrane damaging action of Clostridium perfringens alpha-toxin toward liposomes2007

    • Author(s)
      M.Nagahama, A.Otsuka, M.Oda, R.K.S., Ziora M.Zyta, H.I., M.Nishizawa, J.Sakurai
    • Journal Title

      Biochim.Biophys.Acta-Biomembrane 1768

      Pages: 2940-2945

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis of the sphingomyelin phosphodiesterase activity in natural sphingomyelase from Bacillus cereus2006

    • Author(s)
      H.Ago, M.Oda, M.Takahashi, H.Tsuge, S.Ochi, N.Katunuma, M.Miyano and J.Sakurai
    • Journal Title

      J.Biol.Chem. 281

      Pages: 16157-16167

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Structural basis of the sphingomyelin phosphodiesterase activity in natural Sphingomyelase frm Bacillus cereus2006

    • Author(s)
      H. Ago, M. Oda, M. Takahashi, H. Tsuge, S. Ochi, N. Katunuma, M. Miyano, J. Sakurai.
    • Journal Title

      J. Biol. Chem. 281

      Pages: 16157-1616

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Oligomerization of Clostridium perfringens E -toxin is dependent upon membrane fluidity in liposomes. M. Nagahama2006

    • Author(s)
      H. Hara, M. Fernandez-Miyakawa, Y. Itohayashi, J. Sakurai
    • Journal Title

      Biochemistry 45

      Pages: 296-302

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Oligomerization of Clostridium perfringens ε-toxin isdependent upon membrane fluidity in liposomes2006

    • Author(s)
      M.Nagahama, H.Hara, M.F-Miyakawa, Y.Itohayashi, J.Sakurai
    • Journal Title

      Biochemistry 45

      Pages: 296-302

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Signal transductio mechanism involved in Clostridium perfringens alpha-toxin-indued superoxide anion generation in rabbit neutrophilus2006

    • Author(s)
      M.Oda, S.Ikari, T.Matsuno, Y.Morimune, M.Nagahama, J.Sakurai
    • Journal Title

      Infection and Immunity 74

      Pages: 2876-2886

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Structural basis of the sphingomyelin phosphodiesterase activity in Neutral sphingomyelinase from Bacillus cereus2006

    • Author(s)
      H.Ago, M.Oda, M.Takahashi, H.Tshge, S Ochi, N.Katunuma, N.Miyano, J.Sakurai
    • Journal Title

      The Journal of Biological Chemistry 281

      Pages: 16157-16167

    • Related Report
      2006 Annual Research Report
  • [Journal Article] ウエルシュ菌主要毒素の構造と機能及び活性発現機構に関する研究2006

    • Author(s)
      櫻井 純
    • Journal Title

      日本細菌学雑誌 61

      Pages: 367-379

    • NAID

      10018643349

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Clostridium perfringens beta-toxin; characterization and action2006

    • Author(s)
      J.Sakurai, M.Nagahama
    • Journal Title

      J.Toxicol.Toxin Rev. 25

      Pages: 89-108

    • Related Report
      2006 Annual Research Report
  • [Presentation] セレウス菌スフィンゴミエリナーゼの細胞膜結合領域の解析2007

    • Author(s)
      橋本 学, 小田 真隆, 津下 英明, 勝沼 信彦, 永浜 政博, 櫻井 純
    • Organizer
      第60回日本細菌学会中国・四国支部総会
    • Place of Presentation
      岡山
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] セレウス菌スフィンゴミエリナーゼの細胞膜結合領域の解析2007

    • Author(s)
      橋本 学, 小田 真隆, 津下 英明, 勝沼 信彦, 永浜 政博, 櫻井 純
    • Organizer
      第60回日本細菌学会中国・四国支部総会
    • Place of Presentation
      第60回日本細菌学会中国・四国支部総会
    • Related Report
      2007 Annual Research Report
  • [Presentation] Clostridium perfringens alpha-toxin induces superoxide anion generation in rabbit neutrophils.2006

    • Author(s)
      OM. Oda, J. Sakurai
    • Organizer
      The 8th Japan-Korea International Symposium on Microbiology
    • Place of Presentation
      Kanazawa, Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Role of Tyrosin-57 and-65 in biological and sphingomyelinase activities of Clostridium perfringens alpha-toxin.2006

    • Author(s)
      OM. Nagahama, A. Otsuka, K. Kobayashi, J. Sakurai
    • Organizer
      The 8th Japan-Korea International Symposium on Microbiology
    • Place of Presentation
      Kanazawa, Japan
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Oligomerization of Clostridium perfringens epsilon-toxin is dependent on membrane fluidity in liposomes.2006

    • Author(s)
      OM. Nagahama, K. Kobayashi, H. Hara, M. Fernandes Miyakawa, J. Sakurai
    • Organizer
      Clostpath
    • Place of Presentation
      Nottingham, UK
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Clostridium perfringens alpha-toxin induces superoxide anion generation in rabbit neutrophils.2006

    • Author(s)
      OM. Oda, S. Ikari, T. Matsuno, Y. Morimune, J. Sakurai
    • Organizer
      Clostpath
    • Place of Presentation
      Nottingham, UK
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] スタンダード薬学シリーズ5感染症の現状とその予防2007

    • Author(s)
      櫻井 純
    • Total Pages
      457
    • Publisher
      東京化学同人
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary

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Published: 2006-04-01   Modified: 2016-04-21  

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