• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Development of reasoning technology of open data to contribute aging studies

Research Project

Project/Area Number 18H03298
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 61030:Intelligent informatics-related
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Masuya Hiroshi  国立研究開発法人理化学研究所, バイオリソース研究センター, 室長 (40321814)

Co-Investigator(Kenkyū-buntansha) 古崎 晃司  大阪電気通信大学, 情報通信工学部, 教授 (00362624)
小林 紀郎  国立研究開発法人理化学研究所, 情報システム本部, ユニットリーダー (20415160)
山田 一作 (小山内一作)  公益財団法人野口研究所, 研究部, プロジェクトリーダー (50370185)
Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥17,680,000 (Direct Cost: ¥13,600,000、Indirect Cost: ¥4,080,000)
Fiscal Year 2020: ¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2019: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2018: ¥9,490,000 (Direct Cost: ¥7,300,000、Indirect Cost: ¥2,190,000)
Keywordsオントロジー / 知識探索 / 推論 / 老化 / LOD / 化合物 / セマンティックウェブ / オープンデータ / 知識推論 / テキストマイニング / Linked Open Data
Outline of Final Research Achievements

We selected the chemical substance ontology CHEBI, the life science keyword MESH, and the human gene list HGNC as search targets. In addition, we created an aging ontology that describes aging separately for physiological changes and pathological aging.
In addition, we have developed an inference search function that combines LOD and text mining. Based on the literature co-occurrence data, the server statistically processes the relationship between the keyword and the data (event) containing the keyword (direct relationship layer), and further processes the relationship between the data (indirect processing layer). It is possible to operate at a practical speed with one unit, execute a complicated query created based on the above-mentioned ontology, and output relevance information in a format such as RDF.

Academic Significance and Societal Importance of the Research Achievements

本研究の成果は、生命科学分野では全く新しいアプローチのプレ・スクリーニング技術のヒントとなると考えられる。従来、医薬品におけるリード化合物など、生理活性を持つ化合物選定の選定には、分子シミュレーションが用いられてきた。これに対して、本研究ではグローバルな知識ベースを参照して関連知識を抽出するという従来とは全く異なる新たなアプローチに取り組んだ。この方法の利点は、1) 検索条件を「特定の分子形状」ではなく、「アンチエイジング」等の最終目的に近い課題で設定できる。2) 広範囲かつ多様な情報を探索源とした知識抽出を行うことから汎用性が高いことが挙げられる。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (20 results)

All 2021 2020 2019 2018

All Journal Article (6 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 5 results,  Open Access: 6 results) Presentation (14 results) (of which Int'l Joint Research: 5 results,  Invited: 3 results)

  • [Journal Article] Establishment and application of information resource of mutant mice in RIKEN BioResource Research Center2021

    • Author(s)
      Masuya Hiroshi、Usuda Daiki、Nakata Hatsumi、Yuhara Naomi、Kurihara Keiko、Namiki Yuri、Iwase Shigeru、Takada Toyoyuki、Tanaka Nobuhiko、Suzuki Kenta、Yamagata Yuki、Kobayashi Norio、Yoshiki Atsushi、Kushida Tatsuya
    • Journal Title

      Laboratory Animal Research

      Volume: 37 Issue: 1 Pages: 6-6

    • DOI

      10.1186/s42826-020-00068-8

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Integrated Collection of Stem Cell Bank Data, a Data Portal for Standardized Stem Cell Information2021

    • Author(s)
      Chen Ying、Sakurai Kunie、Maeda Sumihiro、Masui Tohru、Okano Hideyuki、Dewender Johannes、Seltmann Stefanie、Kurtz Andreas、Masuya Hiroshi、Nakamura Yukio、Sheldon Michael、Schneider Juliane、Stacey Glyn N.、Panina Yulia、Fujibuchi Wataru
    • Journal Title

      Stem Cell Reports

      Volume: 16 Issue: 4 Pages: 997-1005

    • DOI

      10.1016/j.stemcr.2021.02.014

    • NAID

      120007142251

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] An atlas of evidence-based phenotypic associations across the mouse phenome2020

    • Author(s)
      Tanaka,N., Masuya, H.
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 1-15

    • DOI

      10.1038/s41598-020-60891-w

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Soft windowing application to improve analysis of high-throughput phenotyping data2019

    • Author(s)
      Haselimashhadi Hamed et al.
    • Journal Title

      Bioinformatics

      Volume: 1 Issue: 5 Pages: 1492-1500

    • DOI

      10.1093/bioinformatics/btz744

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A new mouse model of GLUT1 deficiency syndrome exhibits abnormal sleep-wake patterns and alterations of glucose kinetics in the brain.2019

    • Author(s)
      Furuse T, Mizuma H, Hirose Y, Kushida T, Yamada I, Miura I, Masuya H, Funato H, Yanagisawa M, Onoe H, Wakana S.
    • Journal Title

      Dis Model Mech.

      Volume: 12 Issue: 9 Pages: 38828-38828

    • DOI

      10.1242/dmm.038828

    • NAID

      120007161317

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mouse phenome as biological resource2018

    • Author(s)
      Tanaka Nobuhiko、Masuya Hiroshi
    • Journal Title

      Impact

      Volume: 2018 Issue: 12 Pages: 93-95

    • DOI

      10.21820/23987073.2018.12.93

    • Related Report
      2018 Annual Research Report
    • Open Access
  • [Presentation] バイオリソースの利活用向上を目指した理研BRCホームページのコンテンツ整備2020

    • Author(s)
      櫛田達矢、岩瀬秀、湯原直美、栗原恵子、並木由理、臼田大輝、高田豊行、田中信彦、鈴木健大、桝屋啓志
    • Organizer
      トーゴーの日シンポジウム2020
    • Related Report
      2020 Annual Research Report
  • [Presentation] セマンティックWeb技術を用いた、バイオリソースカタログシステムの開発と運用2020

    • Author(s)
      臼田大輝、櫛田達矢、小林紀郎、桝屋啓志
    • Organizer
      2020年度人工知能学会全国大会(第34回)
    • Related Report
      2020 Annual Research Report
  • [Presentation] 理研BRCのバイオリソース種横断的に検索可能なカタログシステムの開発2020

    • Author(s)
      臼田大輝、櫛田達矢、小林紀郎、桝屋啓志
    • Organizer
      トーゴーの日シンポジウム2020
    • Related Report
      2020 Annual Research Report
  • [Presentation] 複数種類のバイオリソースを横断的に検索するカタログシステムの開発2020

    • Author(s)
      臼田大輝、櫛田達矢、小林紀郎、桝屋啓志
    • Organizer
      第67回日本実験動物学会総会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 情報と一体化した高付加価値リソース創出に向けて2019

    • Author(s)
      桝屋啓志
    • Organizer
      第42回日本分子生物学会年会 ナショナルバイオリソースプロジェクト公開シンポジウム
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Homepage of RIKEN BioResource Research Center2019

    • Author(s)
      Hiroshi Masuya, Daiki Usuda, Naomi Yuhara, Keiko Kurihara, Yuri Namiki, Shigeru Iwase, Kenta Suzuk and Nobuhiko Tanaka
    • Organizer
      33rd International Mammalian Genome Conference
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] バイオリソース研究センターにおける情報統合2019

    • Author(s)
      桝屋啓志、岩瀬秀、田中信彦、鈴木健大、湯原直美、臼田大輝、栗原恵子、並木由理、佐藤道比古、小幡裕一
    • Organizer
      第32回モロシヌス研究会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Data integration for bioresource2019

    • Author(s)
      Hiroshi Masuya, Daiki Usuda, Naomi Yuhara, Keiko Kurihara, Yuri Namiki, Shigeru Iwase, Kenta Suzuk and Nobuhiko Tanaka
    • Organizer
      INFRAFRONTIER/IMPC Conference 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 理研バイオリソース研究センターにおける情報整備2019

    • Author(s)
      桝屋啓志、岩瀬秀、田中信彦、鈴木健大、湯原直美、臼田大輝、栗原恵子、並木由理、佐藤道比古、小幡裕一
    • Organizer
      第66回日本実験動物学会総会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Data integration of mouse phenotype2019

    • Author(s)
      Masuya H
    • Organizer
      AMMRA & AMPC Meeting Workshop
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 視点依存オープンデータの大規模作成支援ツール2018

    • Author(s)
      桝屋啓志, 古崎晃司, 溝口理一郎
    • Organizer
      人口知能学会全国大会(第32回)
    • Related Report
      2018 Annual Research Report
  • [Presentation] LOD Surfer API: クラス間関係に基づく LOD 探索のためのウェブ API2018

    • Author(s)
      山口敦子, 小林紀郎, 桝屋啓志, 山本泰智, 古崎晃司
    • Organizer
      2018年度人口知能学会全国大会(第32回)
    • Related Report
      2018 Annual Research Report
  • [Presentation] Data integration in RIKEN BioResource Research Center2018

    • Author(s)
      Masuya H
    • Organizer
      The 10th ANRRC International Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] RDF-based data integration of mouse phenotype2018

    • Author(s)
      Masuya H
    • Organizer
      6th INCF Japan Node International Workshop
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited

URL: 

Published: 2018-04-23   Modified: 2022-01-27  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi