• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Neutron Structural Biology for New Generation

Research Project

Project/Area Number 18H05229
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Review Section Broad Section B
Research InstitutionKyoto University

Principal Investigator

Sugiyama Masaaki  京都大学, 複合原子力科学研究所, 教授 (10253395)

Co-Investigator(Kenkyū-buntansha) 中川 洋  国立研究開発法人日本原子力研究開発機構, 原子力科学研究部門 原子力科学研究所 物質科学研究センター, 研究主幹 (20379598)
矢木 真穂  名古屋市立大学, 大学院薬学研究科, 研究員 (40608999)
富永 大輝  一般財団法人総合科学研究機構(総合科学研究センター(総合科学研究室)及び中性子科学センター(研究開発, 中性子科学センター, 副主任研究員 (50513694)
佐藤 衛  横浜市立大学, 生命医科学研究科, 客員教授 (60170784)
井上 倫太郎  京都大学, 複合原子力科学研究所, 准教授 (80563840)
齋尾 智英  徳島大学, 先端酵素学研究所, 教授 (80740802)
苙口 友隆  慶應義塾大学, 理工学部(矢上), 講師 (90589821)
小田 隆  立教大学, 理学部, 助教 (00573164)
Project Period (FY) 2018-06-11 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥197,080,000 (Direct Cost: ¥151,600,000、Indirect Cost: ¥45,480,000)
Fiscal Year 2022: ¥21,190,000 (Direct Cost: ¥16,300,000、Indirect Cost: ¥4,890,000)
Fiscal Year 2021: ¥21,450,000 (Direct Cost: ¥16,500,000、Indirect Cost: ¥4,950,000)
Fiscal Year 2020: ¥22,490,000 (Direct Cost: ¥17,300,000、Indirect Cost: ¥5,190,000)
Fiscal Year 2019: ¥41,730,000 (Direct Cost: ¥32,100,000、Indirect Cost: ¥9,630,000)
Fiscal Year 2018: ¥90,220,000 (Direct Cost: ¥69,400,000、Indirect Cost: ¥20,820,000)
Keywords中性子散乱 / 生体高分子ダイナミクス / 重水素化 / 分子動力学シミュレーション / 階層間連携ダイナミクス / 中性子溶液散乱 / タンパク質重水素化 / ドメインライゲーション / 計算機連携解析 / 新世代中性子構造生物学 / ドメイン選択重水素化 / 分子動力学計算 / 階層関連ダイナミクス / 蛋白質重水素化 / 蛋白質階層間連携ダイナミクス / MD連携解析 / 中性子準弾性散乱 / 租視化分子動力学計算 / 蛋白質ダイナミクス
Outline of Final Research Achievements

The dynamics of biomacromolecule has a hierarchy similar to its structure. Unfortunately, experimental methods no longer exist in the spatio-temporal zones (time: picoseconds to microseconds, space: subnanometers to submicrometers). We have established the methodology to access the spatio-temporal zones by mainly using the state-of-arts neutron scattering methods. In our research, we organically linked the development of new prptein deuteration methods, measurement methods for biological samples, and computer analysis methods using various biologically significant samples. At the same time, we clarified the dynamics of the target biopolymers using the developed method, and clarified the function that correlates with the movement.

Academic Significance and Societal Importance of the Research Achievements

本研究は、これまで生物学研究において有用ではあるが、敷居が高かった中性子散乱を一般的な測定手法とした。蛋白質運動の解明は、構造だけでは理解が困難であった機能発現機構の解明に繋がっており、今後の創薬研究にも応用されることは間違いない。また、開発した蛋白質ドメイン連結法は他の測定手法に適用可能なだけでなく、これまで調製不可能であった蛋白質の作成能力を秘めており、新たな蛋白質工学を切り拓いたと言える。加えて本研究には多くの若手研究者が参画しており、そのほとんどが昇進を果たしている。以上より本研究は、基礎・応用の学術発展と人材育成に貢献し、将来に繋がる「新世代中性子構造生物学を開拓」したと言える。

Assessment Rating
Ex-post Assessment Comments (Rating)

A+: In light of the aim of introducing the research area into the research categories, more research outcomes have been produced than expected.

Assessment Rating
Interim Assessment Comments (Rating)

A: In light of the aim of introducing the research area into the research categories, the expected progress has been made in research.

Report

(11 results)
  • 2023 Ex-post Assessment (Comments) ( PDF )
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Abstract (Interim Assessment) ( PDF )   Annual Research Report   Interim Assessment (Comments) ( PDF )
  • 2019 Annual Research Report
  • 2018 Abstract ( PDF )   Comments on the Screening Results ( PDF )   Annual Research Report
  • Research Products

    (156 results)

All 2023 2022 2021 2020 2019 2018 Other

All Journal Article (60 results) (of which Int'l Joint Research: 15 results,  Peer Reviewed: 60 results,  Open Access: 38 results) Presentation (90 results) (of which Int'l Joint Research: 41 results,  Invited: 63 results) Book (3 results) Remarks (3 results)

  • [Journal Article] Incoherent Neutron Scattering and Terahertz Time-Domain Spectroscopy on Protein and Hydration Water2023

    • Author(s)
      Nakagawa Hiroshi、Yamamoto Naoki
    • Journal Title

      Life

      Volume: 13 Issue: 2 Pages: 318-318

    • DOI

      10.3390/life13020318

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Biological Significance of Intrinsically Disordered Protein Structure2022

    • Author(s)
      Sato Mamoru
    • Journal Title

      Chem-Bio Informatics Journal

      Volume: 22 Issue: 0 Pages: 26-37

    • DOI

      10.1273/cbij.22.26

    • ISSN
      1347-0442, 1347-6297
    • Year and Date
      2022-05-31
    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Efficient Multiple Domain Ligation for Proteins Using Asparaginyl Endopeptidase by Selection of Appropriate Ligation Sites Based on Steric Hindrance2022

    • Author(s)
      Okuda Aya、Shimizu Masahiro、Inoue Rintaro、Urade Reiko、Sugiyama Masaaki
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 62 Issue: 1

    • DOI

      10.1002/anie.202214412

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Data Collection for Dilute Protein Solutions via a Neutron Backscattering Spectrometer2022

    • Author(s)
      Taiki Tominaga, Hiroshi Nakagawa, Masae Sahara, Takashi Oda, Rintaro Inoue and Masaaki Sugiyama
    • Journal Title

      Life

      Volume: 12 Issue: 5 Pages: 675-675

    • DOI

      10.3390/life12050675

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Overall structure of fully assembled cyanobacterial KaiABC circadian clock complex by an integrated experimental-computational approach2022

    • Author(s)
      Yunoki Yasuhiro、Matsumoto Atsushi、Morishima Ken、Martel Anne、Porcar Lionel、Sato Nobuhiro、Yogo Rina、Tominaga Taiki、Inoue Rintaro、Yagi-Utsumi Maho、Okuda Aya、Shimizu Masahiro、Urade Reiko、Terauchi Kazuki、Kono Hidetoshi、Yagi Hirokazu、Kato Koichi、Sugiyama Masaaki
    • Journal Title

      Communications Biology

      Volume: 5 Issue: 1 Pages: 184-184

    • DOI

      10.1038/s42003-022-03143-z

    • Related Report
      2022 Annual Research Report 2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Extracting time series matching a small-angle X-ray scattering profile from trajectories of molecular dynamics simulations2022

    • Author(s)
      Shimizu Masahiro、Okuda Aya、Morishima Ken、Inoue Rintaro、Sato Nobuhiro、Yunoki Yasuhiro、Urade Reiko、Sugiyama Masaaki
    • Journal Title

      Scientific Reports

      Volume: 12 Issue: 1 Pages: 9970-9970

    • DOI

      10.1038/s41598-022-13982-9

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Tracking the Structural Development of Amyloid Precursors in the Insulin B Chain and the Inhibition Effect by Fibrinogen2022

    • Author(s)
      Naoki Yamamoto, Rintaro Inoue, Yoshiteru Makino, Hiroshi Sekiguchi, Naoya Shibayama, Akira Naito, Masaaki Sugiyama, and Eri Chatani
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 126 Issue: 51 Pages: 10797-10812

    • DOI

      10.1021/acs.jpcb.2c05136

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Heat-Induced Conformational Transition Mechanism of Heat Shock Factor 1 Investigated by Tryptophan Probe2022

    • Author(s)
      Kawagoe Soichiro、Kumashiro Munehiro、Mabuchi Takuya、Kumeta Hiroyuki、Ishimori Koichiro、Saio Tomohide
    • Journal Title

      Biochemistry

      Volume: 61 Issue: 24 Pages: 2897-2908

    • DOI

      10.1021/acs.biochem.2c00492

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of an endoplasmic reticulum proteostasis modulator that enhances insulin production in pancreatic β cells2022

    • Author(s)
      Miyake Masato、Sobajima Mitsuaki、Kurahashi Kiyoe、Shigenaga Akira、Denda Masaya、Otaka Akira、Saio Tomohide、Sakane Naoki、Kosako Hidetaka、Oyadomari Seiichi
    • Journal Title

      Cell Chemical Biology

      Volume: 7 Issue: 6 Pages: 996-1009

    • DOI

      10.1016/j.chembiol.2022.01.002

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural and Kinetic Views of Molecular Chaperones in Multidomain Protein Folding2022

    • Author(s)
      Kawagoe Soichiro、Ishimori Koichiro、Saio Tomohide
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 23 Issue: 5 Pages: 2485-2485

    • DOI

      10.3390/ijms23052485

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Biophysical elucidation of neural network and chemical regeneration of neural tissue2022

    • Author(s)
      Takahiro Muraoka, Tomohide Saio, Masaki Okumura
    • Journal Title

      Biophysics and Physicobiology

      Volume: 19 Issue: 0 Pages: n/a

    • DOI

      10.2142/biophysico.bppb-v19.0024

    • ISSN
      2189-4779
    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biochemical analysis of the replication initiator protein of staphylococcal plasmid pC1942022

    • Author(s)
      Maekawa Michinari、Oda Takashi、Hanai Ryo
    • Journal Title

      Biochimie

      Volume: 202 Pages: 85-93

    • DOI

      10.1016/j.biochi.2022.08.011

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of water activity on the mechanical glass transition and dynamical transition of bacteria2022

    • Author(s)
      Sogabe Tomochika、Nakagawa Hiroshi、Yamada Takeshi、Koseki Shigenobu、Kawai Kiyoshi
    • Journal Title

      Biophysical Journal

      Volume: 121 Issue: 20 Pages: 3874-3882

    • DOI

      10.1016/j.bpj.2022.09.001

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] C9orf72-derived arginine-rich poly-dipeptides impede phase modifiers2021

    • Author(s)
      Nanaura Hitoki、Aiba Yuichiro、Nakanishi Mari、Shiota Tomo、Hibino Masaki、Kikuchi Sotaro、Nagata Riko、Morikawa Naritaka、Iguchi Naohiko、Kiriyama Takao、Nagamori Shushi、Sugie Kazuma、Saio Tomohide、Yoshizawa Takuya、Mori Eiichiro et al.
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 5301-5301

    • DOI

      10.1038/s41467-021-25560-0

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Conformational dynamics of a multidomain protein by neutron scattering and computational analysis2021

    • Author(s)
      Nakagawa Hiroshi、Saio Tomohide、Nagao Michihiro、Inoue Rintaro、Sugiyama Masaaki、Ajito Satoshi、Tominaga Taiki、Kawakita Yukinobu
    • Journal Title

      Biophysical Journal

      Volume: 120 Issue: 16 Pages: 3341-3354

    • DOI

      10.1016/j.bpj.2021.07.001

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Common architectures in cyanobacteria Prochlorococcus cells visualized by X-ray diffraction imaging using X-ray free electron laser2021

    • Author(s)
      Kobayashi Amane、Takayama Yuki、Hirakawa Takeshi、Okajima Koji、Oide Mao、Oroguchi Tomotaka、Inui Yayoi、Yamamoto Masaki、Matsunaga Sachihiro、Nakasako Masayoshi
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 3877-3877

    • DOI

      10.1038/s41598-021-83401-y

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A feasibility study of inverse contrast-matching small-angle neutron scattering method combined with size exclusion chromatography using antibody interactions as model systems2021

    • Author(s)
      Sato Nobuhiro、Yogo Rina、Yanaka Saeko、Martel Anne、Porcar Lionel、Morishima Ken、Inoue Rintaro、Tominaga Taiki、Arimori Takao、Takagi Junichi、Sugiyama Masaaki、Kato Koichi
    • Journal Title

      The Journal of Biochemistry

      Volume: 0 Issue: 6 Pages: 1-8

    • DOI

      10.1093/jb/mvab012

    • NAID

      40022687772

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Protein hydration and its freezing phenomena: Toward the application for cell freezing and frozen food storage2021

    • Author(s)
      Yamamoto Naoki、Nakanishi Masahiro、Rajan Robin、Nakagawa Hiroshi
    • Journal Title

      Biophysics and Physicobiology

      Volume: 18 Issue: 0 Pages: 284-288

    • DOI

      10.2142/biophysico.bppb-v18.034

    • NAID

      130008128403

    • ISSN
      2189-4779
    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Nanosecond structural dynamics of intrinsically disordered β-casein micelles by neutron spectroscopy2021

    • Author(s)
      Nakagawa Hiroshi、Appavou Marie-Sousai、Wuttke Joachim、Zamponi Michaela、Holderer Olaf、Schrader Tobias E.、Richter Dieter、Doster Wolfgang
    • Journal Title

      Biophysical Journal

      Volume: 120 Issue: 23 Pages: 5408-5420

    • DOI

      10.1016/j.bpj.2021.10.032

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Evaluation of sample cell materials for aqueous solutions used in quasi-elastic neutron scattering measurements2021

    • Author(s)
      Tominaga Taiki、Sahara Masae、Kawakita Yukinobu、Nakagawa Hiroshi、Yamada Takeshi
    • Journal Title

      Journal of Applied Crystallography

      Volume: 54 Issue: 6 Pages: 1631-1640

    • DOI

      10.1107/s1600576721009687

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Hydration and its Hydrogen Bonding State on a Protein Surface in the Crystalline State as Revealed by Molecular Dynamics Simulation2021

    • Author(s)
      Nakagawa Hiroshi、Tamada Taro
    • Journal Title

      Frontiers in Chemistry

      Volume: 9 Pages: 738077-738077

    • DOI

      10.3389/fchem.2021.738077

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Conformational ensemble of a multidomain protein explored by Gd3+ electron paramagnetic resonance2021

    • Author(s)
      Saio, T., Hiramatsu, S., Asada, M., Nakagawa, H., Shimizu, K., Kumeta, H., Nakamura, T., Ishimori, K.
    • Journal Title

      Biophys. J.

      Volume: 120 Issue: 15 Pages: 2943-2951

    • DOI

      10.1016/j.bpj.2021.06.033

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Zinc-Dependent Oligomerization of Thermus thermophilus Trigger Factor Chaperone2021

    • Author(s)
      Zhu Haojie、Matsusaki Motonori、Sugawara Taiga、Ishimori Koichiro、Saio Tomohide
    • Journal Title

      Biology

      Volume: 10 Issue: 11 Pages: 1106-1106

    • DOI

      10.3390/biology10111106

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Quartz Cell for a Backscattering Spectrometer2021

    • Author(s)
      Tominaga Taiki、Kawakita Yukinobu、Nakagawa Hiroshi、Yamada Takeshi、Shibata Kaoru
    • Journal Title

      the Proceedings of the 3rd J-PARC Symposium (J-PARC2019)

      Volume: 1 Pages: 011068-011068

    • DOI

      10.7566/jpscp.33.011086

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Corrosion of Aluminum-based Containers for Neutron Studies with Aqueous Samples under Low Temperatures2021

    • Author(s)
      Tominaga Taiki、Sahara Masae、Kawakita Yukinobu、Nakagawa Hiroshi、Shimamoto Naonobu
    • Journal Title

      JPS Conference Proceedings

      Volume: 33

    • DOI

      10.7566/jpscp.33.011094

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Solution structure of multi-domain protein ER-60 studied by aggregation-free SAXS and coarse-grained-MD simulation2021

    • Author(s)
      Okuda Aya、Shimizu Masahiro、Morishima Ken、Inoue Rintaro、Sato Nobuhiro、Urade Reiko、Sugiyama Masaaki
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 1-13

    • DOI

      10.1038/s41598-021-85219-0

    • NAID

      120006997066

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Deuteration Aiming for Neutron Scattering2021

    • Author(s)
      Okuda Aya、Inoue Rintaro、Morishima Ken、Saio Tomohide、Yunoki Yasuhiro、Yagi-Utsumi Maho、Yagi Hirokazu、Shimizu Masahiro、Sato Nobuhiro、Urade Reiko、Kato Koichi、Sugiyama Masaaki
    • Journal Title

      Biophysics and Physicobiology

      Volume: 18 Issue: 0 Pages: 16-27

    • DOI

      10.2142/biophysico.bppb-v18.003

    • NAID

      130008000165

    • ISSN
      2189-4779
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Histone variant H2A.B-H2B dimers are spontaneously exchanged with canonical H2A-H2B in the nucleosome2021

    • Author(s)
      Rina Hirano, Yasuhiro Arimura, Tomoya Kujirai, Mikihiro Shibata, Aya Okuda, Ken Morishima, Rintaro Inoue, Masaaki Sugiyama, Hitoshi Kurumizaka
    • Journal Title

      Communications Biology

      Volume: 4 Issue: 1 Pages: 1-11

    • DOI

      10.1038/s42003-021-01707-z

    • NAID

      120006960298

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Elucidation of the mechanism of subunit exchange in αB crystallin oligomers2021

    • Author(s)
      Inoue Rintaro、Sakamaki Yusuke、Takata Takumi、Wood Kathleen、Morishima Ken、Sato Nobuhiro、Okuda Aya、Shimizu Masahiro、Urade Reiko、Fujii Noriko、Sugiyama Masaaki
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 1-9

    • DOI

      10.1038/s41598-021-82250-z

    • NAID

      120006956390

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Functional cooperativity between the trigger factor chaperone and the ClpXP proteolytic complex2021

    • Author(s)
      Rizzolo Kamran、Yu Angela Yeou Hsiung、Ologbenla Adedeji、Kim Sa-Rang、Zhu Haojie、Ishimori Koichiro、Thibault Guillaume、Leung Elisa、Zhang Yi Wen、Teng Mona、Haniszewski Marta、Miah Noha、Phanse Sadhna、Minic Zoran、Lee Sukyeong、Caballero Julio Diaz、Babu Mohan、Tsai Francis T. F.、Saio Tomohide、Houry Walid A.
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 281-281

    • DOI

      10.1038/s41467-020-20553-x

    • NAID

      120007186802

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Position Dependency of the Scattered Intensity in the Time-of-flight Backscattering Spectrometer DNA2021

    • Author(s)
      Matsuura Masato、Yamada Takeshi、Tominaga Taiki、Kobayashi Makoto、Nakagawa Hiroshi、Kawakita Yukinobu
    • Journal Title

      the Proceedings of the 3rd J-PARC Symposium (J-PARC2019)

      Volume: 1 Pages: 011068-011068

    • DOI

      10.7566/jpscp.33.011068

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dynamics of proteins with different molecular structures under solution condition2020

    • Author(s)
      Inoue Rintaro、Oda Takashi、Nakagawa Hiroshi、Tominaga Taiki、Saio Tomohide、Kawakita Yukinobu、Shimizu Masahiro、Okuda Aya、Morishima Ken、Sato Nobuhiro、Urade Reiko、Sato Mamoru、Sugiyama Masaaki
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 21678-21678

    • DOI

      10.1038/s41598-020-78311-4

    • NAID

      120007193758

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] NMR Characterization of Conformational Interconversions of Lys48-Linked Ubiquitin Chains2020

    • Author(s)
      Hiranyakorn Methanee、Yanaka Saeko、Satoh Tadashi、Wilasri Thunchanok、Jityuti Benchawan、Yagi-Utsumi Maho、Kato Koichi
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 21 Issue: 15 Pages: 5351-5351

    • DOI

      10.3390/ijms21155351

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] PV1 Protein from Plasmodium falciparum Exhibits Chaperone-Like Functions and Cooperates with Hsp100s2020

    • Author(s)
      Hakamada Kazuaki、Nakamura Manami、Midorikawa Rio、Shinohara Kyosuke、Noguchi Keiichi、Nagaoka Hikaru、Takashima Eizo、Morishima Ken、Inoue Rintaro、Sugiyama Masaaki、Kawamoto Akihiro、Yohda Masafumi
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 21 Issue: 22 Pages: 8616-8616

    • DOI

      10.3390/ijms21228616

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Integral approach to biomacromolecular structure by analytical-ultracentrifugation and small-angle scattering2020

    • Author(s)
      Morishima Ken、Okuda Aya、Inoue Rintaro、Sato Nobuhiro、Miyamoto Yosuke、Urade Reiko、Yagi-Utsumi Maho、Kato Koichi、Hirano Rina、Kujirai Tomoya、Kurumizaka Hitoshi、Sugiyama Masaaki
    • Journal Title

      Communications Biology

      Volume: 3 Issue: 1 Pages: 294-294

    • DOI

      10.1038/s42003-020-1011-4

    • NAID

      120006850271

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Asp isomerization increases aggregation of α-crystallin and decreases its chaperone activity in human lens of various ages2020

    • Author(s)
      Fujii Noriko、Takata Takumi、Kim Ingu、Morishima Ken、Inoue Rintaro、Magami Kousuke、Matsubara Toshiya、Sugiyama Masaaki、Koide Tamaki
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

      Volume: 1868 Issue: 9 Pages: 140446-140446

    • DOI

      10.1016/j.bbapap.2020.140446

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel soybean protein disulphide isomerase family protein possesses dithiol oxidation activity: identification and characterization of GmPDIL62020

    • Author(s)
      Okuda Aya、Matsusaki Motonori、Masuda Taro、Morishima Ken、Sato Nobuhiro、Inoue Rintaro、Sugiyama Masaaki、Urade Reiko
    • Journal Title

      The Journal of Biochemistry

      Volume: 168 Issue: 4 Pages: 393-405

    • DOI

      10.1093/jb/mvaa058

    • NAID

      40022393393

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biological phase separation: cell biology meets biophysics2020

    • Author(s)
      Takuya Yoshizawa、Ryu-Suke Nozawa、Tony Z. Jia、Tomohide Saio、Eiichiro Mori
    • Journal Title

      Biophysical Reviews

      Volume: 12 Issue: 2 Pages: 519-539

    • DOI

      10.1007/s12551-020-00680-x

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Distance Distribution between Two Iodine Atoms Derived from Small-Angle X-ray Scattering Interferometry for Analyzing a Conformational Ensemble of Heavy Atom-Labeled Small Molecules2020

    • Author(s)
      Taguchi Yuya、Saio Tomohide、Kohda Daisuke
    • Journal Title

      The Journal of Physical Chemistry Letters

      Volume: 11 Issue: 14 Pages: 5451-5456

    • DOI

      10.1021/acs.jpclett.0c01107

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Assessment of Force Field Accuracy Using Cryogenic Electron Microscopy Data of Hyper-thermostable Glutamate Dehydrogenase2020

    • Author(s)
      Oroguchi Tomotaka、Oide Mao、Wakabayashi Taiki、Nakasako Masayoshi
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 124 Issue: 39 Pages: 8479-8494

    • DOI

      10.1021/acs.jpcb.0c04464

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Studies of Overlapping Dinucleosomes in Solution2020

    • Author(s)
      Matsumoto Atsushi、Sugiyama Masaaki、Li Zhenhai、Martel Anne、Porcar Lionel、Inoue Rintaro、Kato Daiki、Osakabe Akihisa、Kurumizaka Hitoshi、Kono Hidetoshi
    • Journal Title

      Biophysical Journal

      Volume: 118 Issue: 9 Pages: 2209-2219

    • DOI

      10.1016/j.bpj.2019.12.010

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Sequence-dependent hydration water dynamics of dodecameric DNA2020

    • Author(s)
      H. Nakagawa, Y. Yonetani, K. Nakajima, Seiko Ohira-Kawamura, T Kikuchi, Y. Inamura, M. Kataoka and H. Kono
    • Journal Title

      the Proceedings of the 3rd J-PARC Symposium (J-PARC2019)

      Volume: -

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Quartz Cell for a Backscattering Spectrometer2020

    • Author(s)
      T. Tominaga, Y. Kawakita, H. Nakagawa, T. Yamada, and K. Shibata
    • Journal Title

      the Proceedings of the 3rd J-PARC Symposium (J-PARC2019)

      Volume: -

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Supramolecular tholos-like architecture constituted by archaeal proteins without functional annotation.2020

    • Author(s)
      Maho Yagi-Utsumi,Arunima Sikdar,Chihong Song,Jimin Park,Rintaro Inoue,Hiroki Watanabe,Raymond N Burton-Smith,Toshiya Kozai,Tatsuya Suzuki,Atsuji Kodama,Kentaro Ishii,Hirokazu Yagi,Tadashi Satoh,Susumu Uchiyama,Takayuki Uchihashi,Keehyoung Joo,Jooyoung Lee,Masaaki Sugiyama,Kazuyoshi Murata,Koichi Kato
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 1540-1540

    • DOI

      10.1038/s41598-020-58371-2

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Rigidity of protein structure revealed by incoherent neutron scattering2020

    • Author(s)
      Nakagawa Hiroshi、Kataoka Mikio
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - General Subjects

      Volume: 1864 Issue: 4 Pages: 129536-129536

    • DOI

      10.1016/j.bbagen.2020.129536

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 中性子溶液散乱 -現在・過去・未来-2020

    • Author(s)
      杉山正明*、井上倫太郎、中川 洋、斉尾智英
    • Journal Title

      中性子科学学会誌「波紋」

      Volume: - Pages: 16-25

    • NAID

      130008047185

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 検出技術:天然変性蛋白質の構造生物学2020

    • Author(s)
      小田 隆、齋尾智英
    • Journal Title

      生物工学

      Volume: 98

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Energy landscape of domain motion in glutamate dehydrogenase deduced from cryo‐electron microscopy2020

    • Author(s)
      Oide Mao、Kato Takayuki、Oroguchi Tomotaka、Nakasako Masayoshi
    • Journal Title

      The FEBS Journal

      Volume: - Issue: 16 Pages: 3472-3493

    • DOI

      10.1111/febs.15224

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dipole?dipole interactions between tryptophan side chains and hydration water molecules dominate the observed dynamic stokes shift of lysozyme2020

    • Author(s)
      Fukuda Asahi、Oroguchi Tomotaka、Nakasako Masayoshi
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - General Subjects

      Volume: 1864 Issue: 2 Pages: 129406-129406

    • DOI

      10.1016/j.bbagen.2019.07.015

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Calcium sensing via EF-hand 4 enables thioredoxin activity in the sensor-responder protein calredoxin in the green alga Chlamydomonas reinhardtii2019

    • Author(s)
      Charoenwattanasatien Ratana、Zinzius Karen、Scholz Martin、Wicke Susann、Tanaka Hideaki、Brandenburg Johann S.、Marchetti Giulia M.、Ikegami Takahisa、Matsumoto Takashi、Oda Takashi、Sato Mamoru、Hippler Michael、Kurisu Genji
    • Journal Title

      Journal of Biological Chemistry

      Volume: 295 Issue: 1 Pages: 170-180

    • DOI

      10.1074/jbc.ra119.008735

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Accelerating structural life science by paramagnetic lanthanide probe methods2019

    • Author(s)
      Saio Tomohide、Ishimori Koichiro
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - General Subjects

      Volume: - Issue: 2 Pages: 129332-129332

    • DOI

      10.1016/j.bbagen.2019.03.018

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Newly developed Laboratory-based Size exclusion chromatography Small-angle x-ray scattering System (La-SSS)2019

    • Author(s)
      R. Inoue, T. Nakagawa, K. Morishima, N. Sato, A. Okuda, R. Urade, R. Yogo, S. Yanaka, M. Yagi-Utsumi, K. Kato, K. Omoto, K. Ito, M. Sugiyama
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 1-12

    • DOI

      10.1038/s41598-019-48911-w

    • NAID

      120006799252

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] How can we derive hydration water dynamics with incoherent neutron scattering and molecular dynamics simulation?2019

    • Author(s)
      Nakagawa H, Kataoka M
    • Journal Title

      Biophysics and Physicobiology

      Volume: 16 Issue: 0 Pages: 213-219

    • DOI

      10.2142/biophysico.16.0_213

    • NAID

      130007752723

    • ISSN
      2189-4779
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular Basis of Water Activity in Glycerol?Water Mixtures2019

    • Author(s)
      Nakagawa Hiroshi、Oyama Taiji
    • Journal Title

      Frontiers in Chemistry

      Volume: 7 Pages: 731-731

    • DOI

      10.3389/fchem.2019.00731

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Universality and Structural Implications of the Boson Peak in Proteins2019

    • Author(s)
      Nakagawa Hiroshi、Joti Yasumasa、Kitao Akio、Yamamuro Osamu、Kataoka Mikio
    • Journal Title

      Biophysical Journal

      Volume: 117 Issue: 2 Pages: 229-238

    • DOI

      10.1016/j.bpj.2019.06.007

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Insights into the Inhibition of Amyloid Fibril Formation by Fibrinogen via Interaction with Prefibrillar Intermediates2019

    • Author(s)
      Yamamoto Naoki、Akai Taiki、Inoue Rintaro、Sugiyama Masaaki、Tamura Atsuo、Chatani Eri
    • Journal Title

      Biochemistry

      Volume: 58 Issue: 24 Pages: 2769-2781

    • DOI

      10.1021/acs.biochem.9b00439

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dynamic Views of the Fc Region of Immunoglobulin G Provided by Experimental and Computational Observations2019

    • Author(s)
      Yanaka Saeko、Yogo Rina、Inoue Rintaro、Sugiyama Masaaki、Itoh Satoru G.、Okumura Hisashi、Miyanoiri Yohei、Yagi Hirokazu、Satoh Tadashi、Yamaguchi Takumi、Kato Koichi
    • Journal Title

      Antibodies

      Volume: 8 Issue: 3 Pages: 39-39

    • DOI

      10.3390/antib8030039

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] ATP hydrolysis by KaiC promotes its KaiA binding in the cyanobacterial circadian clock system2019

    • Author(s)
      Yunoki Yasuhiro、Ishii Kentaro、Yagi-Utsumi Maho、Murakami Reiko、Uchiyama Susumu、Yagi Hirokazu、Kato Koichi
    • Journal Title

      Life Science Alliance

      Volume: 2 Issue: 3 Pages: 1-7

    • DOI

      10.26508/lsa.201900368

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Molecular and Structural Basis of the Proteasome α Subunit Assembly Mechanism Mediated by the Proteasome-Assembling Chaperone PAC3-PAC4 Heterodimer2019

    • Author(s)
      Tadashi Satoh, Maho Yagi-Utsumi, Kenta Okamoto, Eiji Kurimoto, Keiji Tanaka and Koichi Kato
    • Journal Title

      Int. J. Mol. Sci.

      Volume: 20 Issue: 9 Pages: 2231-2231

    • DOI

      10.3390/ijms20092231

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural insight into proline cis/trans isomerization of unfolded proteins catalyzed by the trigger factor chaperone2018

    • Author(s)
      Kawagoe Soichiro、Nakagawa Hiroshi、Kumeta Hiroyuki、Ishimori Koichiro、Saio Tomohide
    • Journal Title

      Journal of Biological Chemistry

      Volume: 293 Issue: 39 Pages: 15095-15106

    • DOI

      10.1074/jbc.ra118.003579

    • NAID

      120006585777

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] “Conformational distribution of a multi-domain protein enzyme investigated by paramagnetic NMR and ESR2023

    • Author(s)
      T. Saio
    • Organizer
      3rd India-Japan NMR WORK SHOP
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural insight into regulation and dysregulation of protein assembly and folding2023

    • Author(s)
      T. Saio
    • Organizer
      The 1st IMEG Meeting of The Research Center for High Depth Omics, Kumamoto
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural and kinetic views of regulators for protein folding and assembly2022

    • Author(s)
      T. Saio
    • Organizer
      International Symposium on Unfolded Proteins, Protein folding, and Disease-causing Aggregation, Korea
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Integrated Method with Analytical Ultracentrifugation and Small-Angle Scattering (AUC-SAS) for the Structural Analysis of a Biomacromolecule in a Polydisperse Solution2022

    • Author(s)
      K. Morishima, A. Okuda, N. Sato, M. Shimizu, Y. Yunoki, R. Inoue, R. Urade, M. Sugiyama
    • Organizer
      XVIII International Small Angle Scattering Conference-SAS2022
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Solution Structure Analysis of the Multi-domain Protein, ER-60 by Small Angle Scattering2022

    • Author(s)
      A. Okuda, M. Shimizu, K. Morishima, R. Inoue, N. Sato, Y. Yunoki, R. Urade, M. Sugiyama
    • Organizer
      XVIII International Small Angle Scattering Conference-SAS2022
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Domain Conformation of Multi-domain Protein ER-60 Studied with Hybrid Approach of Coarse-grained Simulations and Small-angle X-ray Scattering2022

    • Author(s)
      M. Shimizu, A. Okuda, K. Morishima, N. Sato, R. Inoue, Y. Yunoki, R. Urade, M. Sugiyama
    • Organizer
      XVIII International Small Angle Scattering Conference-SAS2022
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Dynamics and Structure of Intrinsically Disordered Region of Hef as Studied by Solution Scattering2022

    • Author(s)
      R. Inoue, T. Oda, H. Nakagwa, T. Tominaga, Y. Kawakita, M. Sato, M. Sugiyama
    • Organizer
      XVIII International Small Angle Scattering Conference - SAS2022
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Future Perspective of Biological Small-Angle Scattering2022

    • Author(s)
      M.Sugiyama
    • Organizer
      US-Japan workshop, Oak Ridge
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] SANS for soft matter”, Neutron Scattering on continuous sources - future developments2022

    • Author(s)
      R. Inoue, M. Sugiyama
    • Organizer
      US-Japan workshop, Oak Ridge
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] KumatorI Deuteration Station (KIDS)2022

    • Author(s)
      M. Sugiyama
    • Organizer
      Dunet meeting
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] High Precise Solution Scattering ー SEC-SAXS & AUC-SAS ー2022

    • Author(s)
      M. Sugiyama, R.Inoue, K. Morishima, A. Okuda, H. Kurumizaka, H. Tanaka
    • Organizer
      The 30th Hot Spring Harbor International Symposium Chromatin Potential in Development and Differentiation
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] X線・中性子散乱を加えた統合アプローチによる マルチドメインタンパク質の構造・ダイナミクス解析2022

    • Author(s)
      杉山正明
    • Organizer
      量子ビームサイエンスフェスタ
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] マルチドメイン蛋白質の構造とダイナミクスの階層性の解析2022

    • Author(s)
      中川洋、斎尾智英、長尾道弘、井上倫太郎、杉山正明、富永大輝、川北至信
    • Organizer
      量子ビームサイエンスフェスタ
    • Related Report
      2021 Annual Research Report
  • [Presentation] X線小角散乱と計算科学を用いた統合的解析による天然変性タンパク質の動的構造と機能の理解2022

    • Author(s)
      小田 隆, 大井里香, 古寺哲幸, 安藤敏夫, 小沼 剛, 菅瀬謙治, 苙口友隆, 井上倫太郎, 杉山正明, 石野園子, 石野良純, 佐藤 衛
    • Organizer
      日本農芸化学会2022年度京都大会(JSBBA2022)
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 中性子散乱と分子シミュレーションによる生体分子の構造とダイナミクスの研究2022

    • Author(s)
      中川洋
    • Organizer
      よこはまNMR研究会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 新規光応答性シャペロンの創製とそれを利用した液-液相分離の制御2022

    • Author(s)
      太田 帆香,川越 聡一郎,松崎 元紀,久米田 博之,石森 浩一郎,齋尾 智英
    • Organizer
      2021年度 生物物理学会 北海道支部-東北支部合同例会
    • Related Report
      2021 Annual Research Report
  • [Presentation] タンパク質液滴の形成・制御・破綻の分子メカニズム2022

    • Author(s)
      齋尾 智英
    • Organizer
      日本化学会第102春季年会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 大強度パルス中性子源J-PARC を利用した生命科学研究2021

    • Author(s)
      中川洋
    • Organizer
      2021年生化学会中部支部例会シンポジウム
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Integrative approach to structure of huge protein complex in Kai-clock protein system2021

    • Author(s)
      M.Sugiyama
    • Organizer
      MLZ symposium
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Subunit dynamics in alpha-crystallin through deuteration-assisted small-angle neutron scatterin2021

    • Author(s)
      Inoue, Rintaro; Sakamaki, Yusuke; Takata, Takumi; Morishima, Ken; Wood, Kathleen; Sato, Nobuhiro; Okuda, Aya; Shimizu, Masahiro; Urade, Reiko; Fujii, Noriko; Sugiyama, Masaaki
    • Organizer
      IUCr 2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] "AUC-SAS: Integrated analysis of biomacromolecular structure with analytical ultracentrifugation (AUC) and small-angle scattering (SAS)"2021

    • Author(s)
      Morishima, Ken; Inoue, Rintaro; Shimizu, Masahiro; Okuda, Aya; Sato, Nobuhiro; Urade, Reiko; Sugiyama, Masaaki
    • Organizer
      IUCr 2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Establishment of basic techniques related to protein sample preparation for neutron scattering2021

    • Author(s)
      Okuda, Aya; Inoue, Rintaro; Morishima, Ken; Yunoki, Yasuhiro; Shimizu, Masahiro; Sato, Nobuhiro; Urade, Reiko; Sugiyama, Masaaki
    • Organizer
      IUCr 2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] NMR characterization of conformational interconversions of Lys48-linked polyubiquitin chains2021

    • Author(s)
      M. HIRANYAKORN, S. YANAKA, T. SATOH, M.YAGI-UTSUMI and K. KATO
    • Organizer
      ISMAR-APNMR-NMRSJ-SEST 2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 計算と実験の協奏による生体高分子の作る溶液中での高次構造とそのダイナミクス解析の挑戦2021

    • Author(s)
      杉山正明
    • Organizer
      第7回大型実験施設とスーパーコンピュータとの連携利用シンポジウム
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 散乱法を主とした統合的な手法による溶液中の生体高分子の構造解析2021

    • Author(s)
      杉山正明
    • Organizer
      関東高分子若手会・ミニシンポジウム
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] MDシミュレーションと溶液散乱実験による蛋白質構造揺らぎの可視化: ベイズ学習の適用に向けて2021

    • Author(s)
      苙口友隆
    • Organizer
      CBI学会2021年大会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 中性子準弾性散乱と分子シミュレーションによる蛋白質のドメイン運動の解析2021

    • Author(s)
      中川洋
    • Organizer
      CBI学会2021年大会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 蛋白質の機能的動きに沿った溶媒和自由エネルギー変化の評価法開発2021

    • Author(s)
      苙口友隆
    • Organizer
      第59回日本生物物理学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Hydration structure and dynamics of biomolecule by quasi-elastic neutron scattering2021

    • Author(s)
      Hiroshi Nakagawa
    • Organizer
      POLYSOLVAT-13
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Large-scale conformational distribution of a multi-domain protein enzyme investigated by NMR and EPR2021

    • Author(s)
      Tomohide Saio
    • Organizer
      第59回日本生物物理学会年会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Mechanistic insight into chaperone-mediated protein homeostasis2021

    • Author(s)
      Tomohide Saio
    • Organizer
      The 16th International Symposium of the Institute Network for Biomedical Sciences & KEY FORUM 2021 International Symposium
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ALS-associated factor PRn inhibit the function of KapB22021

    • Author(s)
      Honoka Kawamukai, Koichiro Ishimori, Tomohide Saio
    • Organizer
      The 16th International Symposium of the Institute Network for Biomedical Sciences & KEY FORUM 2021 International Symposium
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 三位一体(試料・測定・解析)の中性子溶液散乱で迫る生体高分子の溶液構造2021

    • Author(s)
      杉山正明
    • Organizer
      CBI学会2021大会シンポジウム
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Internal dynamics of multi-domain protein as revealed by neutron spin echo2021

    • Author(s)
      Rintaro Inoue
    • Organizer
      MRM2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] NMR characterization of conformational interconversions of Lys48-linked ubiquitin chains in solution2021

    • Author(s)
      M. HIRANYAKORN, S. YANAKA, T. SATOH, T. WILASRI, B. JITYUTI, M.YAGI-UTSUMI and K. KATO
    • Organizer
      The 3rd International Conference on Materials Research and Innovation (3rd ICMARI)
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 中性子散乱実験に向けた区分重水素化タンパク質の調製2021

    • Author(s)
      小田 隆, 井上倫太郎, 中川 洋, 富永大輝, 大井里香, 石野良純, 杉山正明, 佐藤 衛
    • Organizer
      日本中性子科学会第21回年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 中性子散乱と分子シミュレーションによる蛋白質の構造とダイナミクスの研究2021

    • Author(s)
      中川洋、斎尾智英、長尾道弘、井上倫太郎、杉山正明、富永大輝、川北至信
    • Organizer
      日本中性子科学会第21回年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] R&D for QENS data acquisition in dilute aqueous solutions in BL02 (DNA)2021

    • Author(s)
      Taiki Tominaga, Hiroshi Nakagawa, Yukinobu Kawakita
    • Organizer
      日本中性子科学会第21回年会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 多量体形成を介したシャぺロンの機能制御2021

    • Author(s)
      齋尾 智英
    • Organizer
      第44回 日本分子生物学会年会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] ストレス応答を制御する転写因子Heat shock factor1の酸化還元依存的な相転移2021

    • Author(s)
      川越聡一郎、松崎元紀、石森浩一郎、齋尾智英
    • Organizer
      第44回 日本分子生物学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Structural and kinetic insights into a molecular chaperone for protein folding, translocation, and degradation2021

    • Author(s)
      Tomohide Saio
    • Organizer
      The 2021 International Chemical Congress of Pacific Basin Societies (Pacifichem 2021)
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] NMR investigation of molecular chaperones manipulating protein folding2021

    • Author(s)
      Tomohide Saio
    • Organizer
      The 2021 International Chemical Congress of Pacific Basin Societies (Pacifichem 2021)
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 溶液中の生体高分子の構造解析 ー溶液散乱を中心とした統合的アプローチー2021

    • Author(s)
      杉山正明
    • Organizer
      自然共生高分子セミナー(5)
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Mechanistic insights into a molecular chaperone in protein folding and degradation2021

    • Author(s)
      Tomohide Saio
    • Organizer
      2021 virtual Cold Spring Harbor Asia Conference
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Observation of protein dynamics with solution scattering2020

    • Author(s)
      Masaaki Sugiyama
    • Organizer
      第 58 回日本生物物理学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] システム内の分子動態を溶液散乱で探る~DA-SANS からBC-SANS を目指して~2020

    • Author(s)
      杉山正明
    • Organizer
      令和2年度BINS公開シンポジウム
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] コントラスト変調小角中性子散乱によるタンパク質複合体の解離会合現象の可視化2020

    • Author(s)
      井上倫太郎
    • Organizer
      CBI学会2020
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 中性子散乱解析を目指したタンパク質ライゲーションの技術戦略2020

    • Author(s)
      奥田 綾, 清水 将裕, 守島 健, 佐藤 信浩, 井上 倫太郎, 裏出 令子, 杉山 正明
    • Organizer
      第20回日本中性子科学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 準弾性中性子散乱による溶液中におけるタンパク質の内部運動解析にむけて2020

    • Author(s)
      井上 倫太郎, 杉山 正明
    • Organizer
      第20回日本中性子科学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 量子ビーム散乱法と分子シミュレーションによるマルチドメイン蛋白質の溶液動態解析2020

    • Author(s)
      中川洋
    • Organizer
      第20回日本中性子科学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] シャペロンから理解する細胞内タンパク質の動態制御メカニズム2020

    • Author(s)
      齋尾 智英
    • Organizer
      第93回日本生化学会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Exploiting paramagnetic metal ions for protein structural study in solution2020

    • Author(s)
      齋尾 智英, 石森 浩一郎
    • Organizer
      第 58 回日本生物物理学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 常磁性金属と分子シャペロン2020

    • Author(s)
      齋尾 智英
    • Organizer
      2020年度日本分光学会NMR分光部会 集中講義
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] On and off between molecular chaperones and clients: Appropriate distance and timing for protein folding2020

    • Author(s)
      Tomohide Saio
    • Organizer
      21st Hokudai-RIES International Symposium
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 蛋白質の階層構造ダイナミクスの解明2020

    • Author(s)
      中川洋、井上倫太郎、小田隆、矢木-内海真穂、斉尾智英、苙口友隆、長田裕也、杉山正明、佐藤衛、川北至信、岩瀬裕希、富永大輝、高田慎一
    • Organizer
      量子ビームサイエンスフェスタ
    • Related Report
      2020 Annual Research Report
  • [Presentation] Solution structure of biomolecules - ensemble average and its decomposition -2020

    • Author(s)
      M. Sugiyama
    • Organizer
      International Symposium, Hydrodynamic and thermodynamic analysis of biological macromolecules and their interactions HyThaBio 2020
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Integrative approach to complex structure and system2019

    • Author(s)
      M. Sugiyama
    • Organizer
      3rd Asia-Oceania Conference on Neutron Scattering (AOCNS 2019)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The dynamic structure and function of intrinsically disordered region of Hef that is associated with a DNA repair2019

    • Author(s)
      T. Oda, A. Sekino, A. Murakami, R. Oi, M. Yoneyama, N. Kodera, T. Ando, T. Konuma, K. Sugase, T. Oroguchi, R. Inoue, M. Sugiyama, S. Ishino, Y. Ishino, M. Sato
    • Organizer
      3rd Asia-Oceania Conference on Neutron Scattering (AOCNS 2019)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Small-angle scattering analysis of nanostructure of hydrated wheat protein assembly2019

    • Author(s)
      N. Sato, R. Urade, M. Sugiyama
    • Organizer
      3rd Asia-Oceania Conference on Neutron Scattering (AOCNS 2019)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Applications of paramagnetic lanthanide ions in NMR and ESR2019

    • Author(s)
      T. Saio
    • Organizer
      International IPR Seminar
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural and kinetic insights into molecular chaperones2019

    • Author(s)
      T. Saio
    • Organizer
      International Symposium on Protein Folding and Misfolding-related Aggregation
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural characterization of the circadian clock protein complexes composed of KaiA, KaiB and KaiC by integrative structural approaches2019

    • Author(s)
      H. Yagi, Y. Yunoki, K. Morishima, K. Ishii, R. Murakami, L. Porcar, A. Martel, R. Inoue, K. Terauchi, S. Uchiyama, M. Sugiyama, K. Kato
    • Organizer
      第3回 J-PARC国際シンポジウム
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Biological Small-Angle Neutron Scattering2019

    • Author(s)
      M.Sugiyama
    • Organizer
      The 11th AONSA Neutron School 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural and kinetic basis for functional modulation of a molecular chaperone2019

    • Author(s)
      T.Saio
    • Organizer
      8th Asia-Pacific NMR Symposium
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] NMR characterization of conformational transition of amyloid-β on ganglioside membrane2019

    • Author(s)
      M. Yagi-Utsumi, S.G. Itoh, H. Okumura, K. Nishimura and K. Kato
    • Organizer
      Frontier Bioorganization Forum 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamic Views of the Fc Portion of Immunoglobulin G Provided by Experimental and Computational Observations2019

    • Author(s)
      S. Yanaka, R. Yogo, R. Inoue, M. Sugiyama, S. G. Itoh, H. Okumura, Y. Miyanoiri, H. Yagi, T. Satoh, T. Yamaguchi and K. Kato
    • Organizer
      Frontier Bioorganization Forum 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Exploring conformational states of a protein enzyme using paramagnetic lanthanide ions2019

    • Author(s)
      T.Saio
    • Organizer
      Biometal Science 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Biophysical characterization of environment-dependent biomolecular assemblies2019

    • Author(s)
      M. Yagi-Utsumi
    • Organizer
      ExCELLS visit talks
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 溶液散乱2019

    • Author(s)
      杉山正明
    • Organizer
      第4回重水素材料研究会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 高濃度に潜む蛋白質を見る ―中性子溶液散乱の挑戦―2019

    • Author(s)
      杉山正明
    • Organizer
      第4回LLPS研究会・ASUKA若手交流会2019
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 天然変性蛋白質の構造研究とLLPSの構造基盤構築への展望2019

    • Author(s)
      佐藤衛
    • Organizer
      第4回LLPS研究会・ASUKA若手交流会2019
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 低複雑性蛋白質の液-液相分離の制御と破綻のメカニズム: NMRによる解析2019

    • Author(s)
      齋尾智英
    • Organizer
      第4回LLPS研究会・ASUKA若手交流会2019
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] DNA修復にかかわるHefの天然変性領域の揺らいだ構造と機能2019

    • Author(s)
      小田 隆, 関野 絢子, 村上 綾香, 大井 里香, 米山 真紀, 古寺 哲幸, 安藤 敏夫, 小沼 剛, 菅瀬 謙治, 苙口 友隆, 井上 倫太郎, 杉山 正明, 石野 園子, 石野 良純, 佐藤 衛
    • Organizer
      第4回LLPS研究会・ASUKA若手交流会2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] 中性子散乱で探る溶液中の蛋白質の構造・ダイナミクス -in Cell SANSを目指して-2019

    • Author(s)
      杉山正明
    • Organizer
      第42回日本分子生物学会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 古細菌蛋白質の高次構造多型の解析2019

    • Author(s)
      矢木真穂
    • Organizer
      2019年度第1回中性子構造生物学研究会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] アルツハイマー病の解明を目指したNMR構造研究2019

    • Author(s)
      矢木真穂
    • Organizer
      東京大学社会連携講座:革新分子構造解析講座 公開シンポジウム ―低分子からタンパク質まで,統合分子構造解析―
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 中性子非弾性散乱・準弾性散乱と分子シミュレーションによる蛋白質ダイナミクスの解析2019

    • Author(s)
      中川 洋
    • Organizer
      CBI学会2019年大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] SAXS/SANS hybrid approach2019

    • Author(s)
      M.Sugiyama
    • Organizer
      PF workshop "Frontiers of the Intermolecular Interactions Analysis of Biomolecules promoted by BioSAS"
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 金属イオンを用いたSAXSとNMRによるマルチドメイン蛋白質の動的構造解析2019

    • Author(s)
      齋尾智英
    • Organizer
      PF研究会「BioSASが拓く生体高分子の分子間相互作用解析の最前線」
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 蛋白質構造の硬さ・柔らかさと水和水ダイナミクス2019

    • Author(s)
      中川 洋
    • Organizer
      ATI水和ナノ構造研究会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Biophysical characterization of environment-dependent protein assemblies of physiological and pathological interest2019

    • Author(s)
      M. Yagi-Utsumi and K. Kato
    • Organizer
      第57回 日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Domain motion of Fv-fragment in antibody immunoglobulin G controls conformation of antigen-recognizing loop through hydration structure2019

    • Author(s)
      T. Oroguchi, M. Nakasako
    • Organizer
      第57回 日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] The structure and function of intrinsically disordered region of Hef that is associated with a DNA repair2019

    • Author(s)
      T. Oda, A. Sekino, A. Murakami, R. Oi, M. Yoneyama, N. Kodera, T. Ando, T. Konuma, K. Sugase, T. Oroguchi, S. Ishino, Y. Ishino, and M. Sato
    • Organizer
      第57回 日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] QENS of protein solutions measured by the TOF near Backscattering Spectrometer DNA2019

    • Author(s)
      H. Nakagawa, T. Saio, T. Oda, M. Sato, R. Inoue, M. Sugiyama, T. Tominaga, Y. Kawakita
    • Organizer
      J-PARC Symposium 2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] 中性子準弾性散乱による蛋白質の拡散運動と構造揺らぎの解析2019

    • Author(s)
      中川 洋
    • Organizer
      蛋白質研究所セミナー「液・液相分離の新たな展開へ向けて」
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 溶液散乱で探る生体高分子の構造とダイナミクス2019

    • Author(s)
      杉山正明
    • Organizer
      第20回若手NMR研究会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Neutron Scattering - tools for structure and dynamics for biomacromolecules in solution-2019

    • Author(s)
      杉山正明
    • Organizer
      The 13th Mini-Symposium on Liquids MSL2019
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 非干渉性中性子準弾性散乱による生体物質の相転移と分子運動性の解析2019

    • Author(s)
      中川 洋
    • Organizer
      第2回LLPS研究会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Future Perspective of Laboratory-Based SAXS2018

    • Author(s)
      M. Sugiyama
    • Organizer
      XVII International Small-Angle Scattering Conference (SAS2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Laboratory based SEC SAXS SYSTEM (La-SSS)2018

    • Author(s)
      R. Inoue, K. Morishima, N. Sato, M. Sugiyama, T. Nakagawa
    • Organizer
      XVII International Small-Angle Scattering Conference (SAS2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Book] 実験医学別冊 相分離解析プロトコール “中性子散乱”2022

    • Author(s)
      1.中川洋、松尾龍人
    • Total Pages
      6
    • Publisher
      羊土社
    • Related Report
      2022 Annual Research Report
  • [Book] 「溶液散乱法Ⅰ:静的構造解析」相分離生物学の全貌(現代化学増刊46)2020

    • Author(s)
      杉山正明 (編) 白木 賢太郎
    • Total Pages
      400
    • Publisher
      東京化学同人
    • ISBN
      9784807913466
    • Related Report
      2020 Annual Research Report
  • [Book] 「溶液散乱法Ⅱ:動的構造を中心に」相分離生物学の全貌(現代化学増刊46)2020

    • Author(s)
      井上倫太郎 (編)白木 賢太郎
    • Total Pages
      400
    • Publisher
      東京化学同人
    • ISBN
      9784807913466
    • Related Report
      2020 Annual Research Report
  • [Remarks] 新世代中性子構造生物学の開拓

    • URL

      http://www.rri.kyoto-u.ac.jp/PSlab/s-project.html#project2

    • Related Report
      2022 Annual Research Report
  • [Remarks] 新世代中性子構造生物学の開拓

    • URL

      http://www.rri.kyoto-u.ac.jp/NSBNG/

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
  • [Remarks] 新世代中性子構造生物学の開拓

    • URL

      http://www.rri.kyoto-u.ac.jp/NSBNG/home.html

    • Related Report
      2019 Annual Research Report

URL: 

Published: 2018-06-12   Modified: 2024-03-28  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi