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Construction of an artificial protein supramolecular machine with a sensor protein as a driving core

Research Project

Project/Area Number 18K04906
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 28040:Nanobioscience-related
Research InstitutionNara Institute of Science and Technology

Principal Investigator

Yamanaka Masaru  奈良先端科学技術大学院大学, 先端科学技術研究科, 助教 (60632825)

Project Period (FY) 2018-04-01 – 2022-03-31
Project Status Discontinued (Fiscal Year 2021)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2021: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2020: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2019: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywordsタンパク質超分子 / センサータンパク質 / ナノマシン / タンパク質設計 / ドメインスワッピング / 四次構造変 / 四次構造変化 / 駆動型超分子
Outline of Final Research Achievements

Based on a domain swapping structure, AVCP/N-BBPl9-AVCP/C (ABA) was constructed by fusing the bacterial sensor protein AVCP, which dissociates dimer to monomer with CO binding, and the artificial protein building block BBPl9, which forms a closed cyclic trimer. The ABA was formed supramolecules by heating or treatment with ethanol, and the supramolecules were reversibly changed its size by the ligand binding of CO or imidazole. In this study, we succeeded in demonstrating the method for constructing a protein supramolecular machine with movement by incorporating the sensor protein into the artificial protein supramolecule as a driving core.

Academic Significance and Societal Importance of the Research Achievements

天然タンパク質超分子はナノスケールで駆動する分子機械=ナノマシンとして機能する。近年、タンパク質を素材として、人工ナノ構造体の構築は可能になってきたが、天然のタンパク質のように駆動する人工タンパク質マシンの構築は、困難であった。本研究の成果は、センサータンパク質の動作機構を駆動系としてタンパク質超分子に組み込むことで、人工タンパク質超分子に動きを持たせナノマシンとする方法論の有効性を示すものである。

Report

(4 results)
  • 2021 Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (13 results)

All 2021 2020 2019 2018

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (12 results) (of which Int'l Joint Research: 3 results,  Invited: 1 results)

  • [Journal Article] Conferment of CO-Controlled Dimer-Monomer Transition Property to Thermostable Cytochrome c′ by Mutation in the Subunit-Subunit Interface2019

    • Author(s)
      Yamanaka Masaru、Nakayama Ryoko、Fujii Sotaro、Wakai Satoshi、Sambongi Yoshihiro、Hirota Shun
    • Journal Title

      Bulletin of the Chemical Society of Japan

      Volume: 92 Issue: 3 Pages: 702-709

    • DOI

      10.1246/bcsj.20180311

    • NAID

      130007614161

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] センサータンパク質を駆動系として組み込んだビルディングブロックタンパク質の超分子化2021

    • Author(s)
      吉田充希、山中優、廣田俊
    • Organizer
      日本化学会第101春季大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] センサータンパク質を駆動系として組み込んだビルディングブロックタンパク質の二量体の性質と挙動2021

    • Author(s)
      山中優、内橋貴之、廣田俊
    • Organizer
      日本化学会第101春季大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Construction of Structure-Switchable Protein Supramolecules using Fusion Proteins Designed Based on 3D Domain Swapping2020

    • Author(s)
      Masaru Yamanaka, Takayuki Uchihashi, Shun Hirota
    • Organizer
      第20回日本蛋白質科学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] The Design of Artificial Domain-Swapped Dimers by Polyproline Rod Insertion2020

    • Author(s)
      Shota Shiga, Masaru Yamanaka, Wataru Fujiwara, Shun Hirota, Shuichiro Goda, Koki Makabe
    • Organizer
      第20回日本蛋白質科学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] ドメインスワップ構造を基に設計した融合タンパク質による可動型超分子の構築2020

    • Author(s)
      山中優、廣田俊
    • Organizer
      日本化学会第100春季大会
    • Related Report
      2019 Research-status Report
  • [Presentation] Conferment of CO-Controlled Dimer-Monomer Transition Property to Thermostable Cytochrome c′ by Mutation in the Subunit Interface2019

    • Author(s)
      Masaru Yamanaka, Ryoko Nakayama, Sotaro Fujii, Satoshi Wakai, Yoshihiro Sambongi, Shun Hirota
    • Organizer
      15th International Symposium on Applied Bioinorganic Chemistry (ISABC15)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Construction of Protein Supramolecules Based on Domain Swapping2019

    • Author(s)
      Masaru Yamanaka, Satoshi Nagao, Chunguang Ren, Mohan Zhang, Akiya Oda, Yoshiki Higuchi, Shun Hirota
    • Organizer
      第19回蛋白質科学会年会
    • Related Report
      2019 Research-status Report 2018 Research-status Report
  • [Presentation] Construction of Protein Supramolecules Based on Domain-Swapping Mechanism2019

    • Author(s)
      Masaru Yamanaka, Satoshi Nagao, Chunguang Ren, Mohan Zhang, Akiya Oda, Yoshiki Higuchi, Shun Hirota
    • Organizer
      33rd Annual Symposium of the Protein Society
    • Related Report
      2019 Research-status Report 2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] ドメインスワップ機構を利用した駆動型人工タンパク質超分子の構築2019

    • Author(s)
      山中優
    • Organizer
      農芸化学会関西支部ミニシンポジウム
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 耐熱性シトクロムcのサブユニット界面変異によるCO応答性2量体-単量体変換特性の付与2019

    • Author(s)
      山中優、中山諒子、若井暁、藤井創太郎、三本木至宏、廣田俊
    • Organizer
      日本化学会第99春季大会
    • Related Report
      2018 Research-status Report
  • [Presentation] Formation of Cytochrome c' tetramer Using Domain-Swapping and Carbon Monoxide-Dependent Control of Oligomer Association/Dissociation2019

    • Author(s)
      Masaru Yamanaka, Satoshi Nagao, Shun Hirota
    • Organizer
      15th International Symposium on Applied Bioinorganic Chemistry
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] サブユニット界面変異による耐熱性シトクロムc′へのCO依存的2量体-単量体遷移特性の付与2018

    • Author(s)
      山中優、中山諒子、藤井創太郎、岩井暁、三本木至宏、廣田俊
    • Organizer
      第12回バイオ関連化学シンポジウム
    • Related Report
      2018 Research-status Report

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Published: 2018-04-23   Modified: 2023-01-30  

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