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Synthesis of modified histones and its use for preparation of asymmetric nucleosomes

Research Project

Project/Area Number 18K05316
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 37010:Bio-related chemistry
Research InstitutionOsaka University

Principal Investigator

Kawakami Toru  大阪大学, 蛋白質研究所, 准教授 (70273711)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2020: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2019: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2018: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords蛋白質 / ライゲーション / ヒストン / 翻訳後修飾 / ユビキチン / DNAメチル化 / ヌクレオソーム
Outline of Final Research Achievements

Based on the peptide ligation method, we decided to chemically synthesize four types of histones, including post-translational modifications, with the aim of constructing nucleosomes containing selectively modified histones. We also attempt to develop a more efficient ligation method. As a result, we synthesized three types of histones including post-translational modifications, including the results so far. In particular, we succeeded in synthesizing histones containing ubiquitin modification, which is a small protein, and found that the modification activates DNA methyltransferase. Although the synthesis of one type of histone could not be started, it can be synthesized by the similar strategy. We have also found a ligation method with high reaction efficiency and are studying its application.

Academic Significance and Societal Importance of the Research Achievements

遺伝子(DNA)は4種類のヒストンタンパク質からなる8量体に巻き付きヌクレオソームを構成する.これが連なった状態で細胞核に収納される.ヒストンやその関連タンパク質は種々の翻訳後修飾(化学修飾)を受けることで,構造変化やタンパク質間の相互作用を調整して,この遺伝子の発現制御を行っている.これらの修飾は非常に複雑であり,その機能は必ずしも解明されていない.これらの翻訳後修飾を受けたヒストンを選択的に化学合成できるようになれば,それらの機能の解明に非常に有用である.

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (16 results)

All 2021 2020 2019 2018 Other

All Journal Article (4 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 4 results,  Open Access: 2 results) Presentation (11 results) (of which Int'l Joint Research: 4 results,  Invited: 2 results) Remarks (1 results)

  • [Journal Article] Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation2020

    • Author(s)
      A. Nishiyama, C. Mulholland, S. Bultmann, S. Kori, A. Endo, Y. Saeki, W. Qin, C. Trummer, Y. Chiba, H. Yokoyama, S. Kumamoto, T. Kawakami, H. Hojo, G. Nagae, H. Aburatani, K. Tanaka, K. Arita, H. Leonhardt, M. Nakanishi
    • Journal Title

      Nat. Commun.

      Volume: 11 Issue: 1 Pages: 1222-1222

    • DOI

      10.1038/s41467-020-15006-4

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Enhanced processivity of Dnmt1 by monoubiquitinated histone H32020

    • Author(s)
      Y. Mishima, L. Brueckner, S. Takahashi, T. Kawakami, J. Otani, A. Shinohara, K. Takeshita, R. G. Garvilles, M. Watanabe, N. Sakai, H. Takeshima, C. Nachtegael, A. Nishiyama, M. Nakanishi, K. Arita, K. Nakashima, H. Hojo, I. Suetake
    • Journal Title

      Genes Cells

      Volume: 25 Issue: 1 Pages: 22-32

    • DOI

      10.1111/gtc.12732

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Chemical synthesis of the ubiquitinated form of histone H3 and its effect on DNA methyltransferase 12019

    • Author(s)
      T. Kawakami, Y. Mishima, M. Takazawa, H. Hojo, I. Suetake
    • Journal Title

      J. Pept. Sci.

      Volume: 25 Issue: 9

    • DOI

      10.1002/psc.3200

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Glycopeptide synthesis based on a TFA-labile protection strategy and one-pot four-segment ligation for the synthesis of O-glycosylated histone H2A2019

    • Author(s)
      Y. Asahina, T. Kawakami, H. Hojo
    • Journal Title

      Eur. J. Org. Chem.

      Volume: - Issue: 9 Pages: 1915-1920

    • DOI

      10.1002/ejoc.201801885

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Presentation] Synthesis of Ubiquitinated Histone H3 and its Effect on DNA Methyltransferase 12021

    • Author(s)
      Toru Kawakami
    • Organizer
      The 18th Akabori Conference
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ライゲーション法を基盤とする翻訳後修飾タンパク質の化学合成2021

    • Author(s)
      川上 徹
    • Organizer
      蛋白質研究所セミナー「多角的な視点による蛋白質修飾の機能解明」
    • Related Report
      2020 Annual Research Report
  • [Presentation] Investigation on stereochemistry of cysteinyl prolyl ester (CPE) peptide for the formation of thioester2020

    • Author(s)
      Eri Sasakura, Hironobu Hojo, Toru Kawakami
    • Organizer
      第57回ペプチド討論会
    • Related Report
      2020 Annual Research Report
  • [Presentation] ユビキチン化ヒストンH3の化学合成2019

    • Author(s)
      川上 徹,高澤雅也,三島優一,北條裕信,末武 勲
    • Organizer
      第19回日本蛋白質科学会年会,第71回日本細胞生物学会大会 合同年次大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 修飾ヒストンの化学合成2019

    • Author(s)
      川上 徹
    • Organizer
      蛋白質研究所セミナー「化学によるタンパク質修飾の機能解明を目指して」
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] ユビキチン化ヒストンH3の化学合成とその効果2019

    • Author(s)
      川上 徹,三島優一,高澤雅也,北條裕信,末武 勲
    • Organizer
      第13回バイオ関連化学シンポジウム
    • Related Report
      2019 Research-status Report
  • [Presentation] Chemical Synthesis of Ubiquitinated Histone H3 and Its Effect on DNA Methyltransferase 12019

    • Author(s)
      T. Kawakami, Y. Mishima, M. Takazawa, H. Hojo, I. Suetake
    • Organizer
      第56回ペプチド討論会
    • Related Report
      2019 Research-status Report
  • [Presentation] 修飾ヒストンの化学合成とその応用例2019

    • Author(s)
      川上 徹
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Chemical synthesis of ubiquitinated histone H32018

    • Author(s)
      Toru Kawakami, Masaya Takazawa, Yuichi Mishima, Hironobu Hojo, Isao Suetake
    • Organizer
      The 10th international Peptide Symposium
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Synthesis of Ubiquitinated Histone2018

    • Author(s)
      Toru Kawakami
    • Organizer
      The 17th Akabori Conference
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] A preparation of isopeptide mimetics by the peptide ligation using a thiirane linker2018

    • Author(s)
      Toru Kawakami, Yuichi Mishima, Hironobu Hojo, Isao Suetake
    • Organizer
      35th European Peptide Symposium
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Remarks]

    • URL

      http://www.protein.osaka-u.ac.jp/organic/publication/kawa.html

    • Related Report
      2020 Annual Research Report

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Published: 2018-04-23   Modified: 2022-01-27  

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