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Could "Ktedonobacteria" be a new group of useful bacteria comparable to actinomycetes?

Research Project

Project/Area Number 18K05406
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 38020:Applied microbiology-related
Research InstitutionTohoku University

Principal Investigator

Shuhei Yabe  東北大学, 農学研究科, 准教授 (60564838)

Project Period (FY) 2018-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2019: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2018: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsクテドノバクテリア / 放線菌 / 難培養微生物 / 二次代謝物 / 二次代謝物物 / 天狗の麦飯 / Dictyobacteraceae
Outline of Final Research Achievements

We have focused on a taxon, Ktedonobacteria, that shows an actinomycete-like morphology that could be a new beneficial bioresource for the fermentation industry, but few pure culture strains were available, and little is known about their taxonomy and physiology. This study described two new families, three new genera, and 11 new species in this taxon. The genome analysis revealed that they represent a valuable resource of novel secondary metabolites and new enzymes for woody biomass utilization.

Academic Significance and Societal Importance of the Research Achievements

近年、多剤耐性菌による感染症が拡大する中、創薬資源「放線菌」からの新規抗生物質の創出は急減しており、新たな生物資源の開拓が急務である。クテドノバクテリアが放線菌に匹敵する新資源となり得るとした新しい視点に基づき、本系統の開拓に取り組んできた。本研究により本分類群が飛躍的に拡充され、ゲノム解析により有益資源としてのポテンシャルが示されたことは、我が国の発酵工業を活気づける要因と成り得る成果である。

Report

(5 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (16 results)

All 2021 2019 2018 Other

All Int'l Joint Research (1 results) Journal Article (7 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 5 results,  Open Access: 4 results) Presentation (8 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results)

  • [Int'l Joint Research] NAICONS Srl/FIIRV(イタリア)

    • Related Report
      2021 Annual Research Report
  • [Journal Article] High cellulolytic potential of the Ktedonobacteria lineage revealed by genome-wide analysis of CAZymes2021

    • Author(s)
      Zheng Yu、Maruoka Mayumi、Nanatani Kei、Hidaka Masafumi、Abe Naoki、Kaneko Jun、Sakai Yasuteru、Abe Keietsu、Yokota Akira、Yabe Shuhei
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: in press Issue: 6 Pages: 622-630

    • DOI

      10.1016/j.jbiosc.2021.01.008

    • Related Report
      2021 Annual Research Report 2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Reticulibacter mediterranei gen. nov., sp. nov., within the new family Reticulibacteraceae fam. nov., and Ktedonospora formicarum gen. nov., sp. nov., Ktedonobacter robiniae sp. nov., Dictyobacter formicarum sp. nov. and Dictyobacter arantiisoli sp. nov., belonging to the class Ktedonobacteria2021

    • Author(s)
      Yabe Shuhei、Zheng Yu、Wang Chiung-mei、Sakai Yasuteru、Abe Keietsu、Yokota Akira、Donadio Stefano、Cavaletti Linda、Monciardini Paolo
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 71 Issue: 7

    • DOI

      10.1099/ijsem.0.004883

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Thermogemmatispora aurantia sp. nov. and Thermogemmatispora argillosa sp. nov., within the class Ktedonobacteria, and emended description of the genus Thermogemmatispora2019

    • Author(s)
      Zheng Yu、Wang Chiung-Mei、Sakai Yasuteru、Abe Keietsu、Yokota Akira、Yabe Shuhei
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 69 Issue: 6 Pages: 1744-1750

    • DOI

      10.1099/ijsem.0.003388

    • Related Report
      2019 Research-status Report 2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome Features and Secondary Metabolites Biosynthetic Potential of the Class Ktedonobacteria2019

    • Author(s)
      Yu ZHENG, Ayana Saitou, Chiung-Mei Wang, Atsushi Toyoda, Yohei Minakuchi, Yuji Sekiguchi, Kenji Ueda, Hideaki Takano, Yasuteru Sakai, Keietsu Abe, Akira Yokota and Shuhei Yabe
    • Journal Title

      Frontiers in Microbiology

      Volume: 10 Pages: 893-893

    • DOI

      10.3389/fmicb.2019.00893

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Formation of sporangiospores in <i>Dictyobacter aurantiacus</i> (class <i>Ktedonobacteria</i> in phylum <i>Chloroflexi</i>)2019

    • Author(s)
      Yabe Shuhei、Wang Chiung-mei、Zheng Yu、Sakai Yasuteru、Abe Keietsu、Yokota Akira
    • Journal Title

      The Journal of General and Applied Microbiology

      Volume: 65 Issue: 6 Pages: 316-319

    • DOI

      10.2323/jgam.2019.01.001

    • NAID

      130007792579

    • ISSN
      0022-1260, 1349-8037
    • Related Report
      2019 Research-status Report
  • [Journal Article] Formation of sporangiospores in Dictyobacter aurantiacus (class Ktedonobacteria in phylum Chloroflexi)2019

    • Author(s)
      Shuhei Yabe, Chiung-mei Wang, Yu Zheng, Yasuteru Sakai, Keietsu Abe, Akira Yokota
    • Journal Title

      The Journal of General and Applied Microbiology

      Volume: 65

    • Related Report
      2018 Research-status Report
  • [Journal Article] Tengunoibacter tsumagoiensis gen. nov., sp. nov., Dictyobacter kobayashii sp. nov., Dictyobacter alpinus sp. nov., and description of Dictyobacteraceae fam. nov. within the order Ktedonobacterales isolated from Tengu-no-mugimeshi, a soillike granular mass of micro-organisms, and emended descriptions of the genera Ktedonobacter and Dictyobacter2019

    • Author(s)
      Chiung-mei Wang, Yu Zheng, Yasuteru Sakai, Atsushi Toyoda, Yohei Minakuchi, Keietsu Abe, Akira Yokota, Shuhei Yabe
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 69 Issue: 7 Pages: 1910-1918

    • DOI

      10.1099/ijsem.0.003396

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 「天狗の麦飯」から分離されたクテドノバクテリア(Dictyobacter alpinus Uno16)からの抗菌化合物の探索2021

    • Author(s)
      齋藤 彩菜、 白石 太郎、 葛山 智久、 新谷 尚弘、 工藤 雄大、 山下 まり、 阿部 敬悦、 横田 明、矢部 修平
    • Organizer
      日本農芸化学会2021年度大会
    • Related Report
      2020 Research-status Report
  • [Presentation] 「クテドノバクテリア(綱)」クテドノバクテリアDictyobacter aurantiacus S27株の形態分化とゲノム及び二次代謝の特徴2019

    • Author(s)
      鄭 宇、王 瓊渼、齋藤 彩菜、酒井 康輝、阿部 敬悦、横田 明、矢部 修平
    • Organizer
      日本農芸化学会2019年度大会
    • Related Report
      2019 Research-status Report
  • [Presentation] Novel natural products biosynthetic potential of the class Ktedonobacteria2019

    • Author(s)
      Zheng, Y., Saito, A., Wang C. M., Toyoda, A., Minakuchi, Y., Sakai, Y., Abe, K., Yokota, A. and Yabe, S.
    • Organizer
      The 8th FEMS Conference
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] クテドノバクテリアの魅力~複雑な形態分化とゲノムに潜在する多様な機能~2019

    • Author(s)
      矢部修平
    • Organizer
      日本農芸化学会東北支部70周年シンポジウム
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] クロロフレクサス門に属する放線菌様細菌「クテドノバクテリア(綱)」のゲノムの特徴2018

    • Author(s)
      鄭 宇、王 瓊渼、酒井 康輝、阿部 敬悦、横田 明、矢部 修平
    • Organizer
      日本微生物生態学会32回大会
    • Related Report
      2018 Research-status Report
  • [Presentation] 蔵王山の土壌と「天狗の麦飯」から新しいクテドノバクテリアの分離および系統分類2018

    • Author(s)
      王 瓊渼、鄭 宇、酒井 康輝、宮下 英明、阿部 敬悦、横田 明 、矢部 修平
    • Organizer
      日本微生物生態学会32回大会
    • Related Report
      2018 Research-status Report
  • [Presentation] 放線菌様の胞子嚢を形成するクテドノバクテリア綱に属する新しい系統「Dictyobacteraceae科」の特徴2018

    • Author(s)
      矢部 修平、鄭 宇、王 瓊渼、酒井 康輝、阿部 敬悦、横田 明
    • Organizer
      2018年度放線菌学会大会
    • Related Report
      2018 Research-status Report
  • [Presentation] Identification of Secondary Metabolites Gene Clusters in the Class Ktedonobacteria with Actinomycetes-Like-Morphology2018

    • Author(s)
      Shuhei Yabe, Yu Zheng, Atsushi Toyoda, Yohei Minakuchi, Chang-Mei Wang, Yasuteru Sakai, Keietsu Abe, Akira Yokota
    • Organizer
      ASM microbe 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research

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Published: 2018-04-23   Modified: 2023-01-30  

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