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Whole genome analysis to investigate the hybridization process between Japanese indigenous citrus and foreign derived citrus

Research Project

Project/Area Number 18K05623
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 39030:Horticultural science-related
Research InstitutionSaga University

Principal Investigator

NAGANO Yukio  佐賀大学, 総合分析実験センター, 准教授 (00263038)

Co-Investigator(Kenkyū-buntansha) 山本 雅史  鹿児島大学, 農水産獣医学域農学系, 教授 (00305161)
古藤田 信博  佐賀大学, 農学部, 准教授 (50355426)
Project Period (FY) 2018-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2019: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2018: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywordsカンキツ / タチバナ / シークヮーサー / 日本固有 / ゲノム
Outline of Final Research Achievements

cultivated species that may have been formed as a result of hybridization between Japanese indigenous citrus and those of foreign origin, and investigated the history of Citrus species in Japan. As a result, we found that more than 10 Japanese indigenous Citrus species were generated by hybridization between "a genetically related group of foreign-derived Citrus species (a group consisting of various cultivated species formed due to hybridization between mandarin and pummelo)" and "a genetically related group of Japanese indigenous cCitrus species (tachibana and shiikwaasa)".

Academic Significance and Societal Importance of the Research Achievements

カンキツは、特によく利用される果樹である。海外に由来するカンキツの栽培種の他に、我が国に元々自生するカンキツが利用されている。海外由来カンキツと日本固有カンキツに関係を探ったのが本研究であり、その結果、興味深い知見がいくつかわかった。これら知見を活用して、各地の在来カンキツをアピールして、これらカンキツに付加価値をつけることが期待できる。また、本研究の成果は、カンキツの育種にも活用できる。

Report

(5 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (26 results)

All 2022 2021 2020 2019 2018 Other

All Journal Article (15 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 15 results,  Open Access: 13 results) Presentation (9 results) (of which Invited: 1 results) Remarks (2 results)

  • [Journal Article] Development of Monascus purpureus monacolin K-hyperproducing mutant strains by synchrotron light irradiation and their comparative genome analysis2022

    • Author(s)
      Ketkaeo Sittichoke、Nagano Yukio、Baba Shuichiro、Kimura Kei、Futagami Taiki、Sanpamongkolchai Werasit、Kobayashi Genta、Goto Masatoshi
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 133 Issue: 4 Pages: 362-368

    • DOI

      10.1016/j.jbiosc.2021.11.011

    • NAID

      210000159598

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Draft Genome Sequences of Two Antimicrobial Compound-Producing Strains of <i>Bacillus</i> Species, TM-R and SY1-12022

    • Author(s)
      Ryuda Noriko、Someya Takashi、Nagano Yukio
    • Journal Title

      Microbiology Resource Announcements

      Volume: 11 Issue: 2 Pages: 1-2

    • DOI

      10.1128/mra.01010-21

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genetic diversity and population structure of razor clam Sinonovacula constricta in Ariake Bay, Japan, revealed using RAD-Seq SNP markers2021

    • Author(s)
      Orita Ryo、Nagano Yukio、Kawamura Yoshio、Kimura Kei、Kobayashi Genta
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 1-9

    • DOI

      10.1038/s41598-021-87395-5

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genomic diversity of 39 samples of Pyropia species grown in Japan2021

    • Author(s)
      Nagano Yukio、Kimura Kei、Kobayashi Genta、Kawamura Yoshio
    • Journal Title

      PLOS ONE

      Volume: 16 Issue: 6 Pages: 1-22

    • DOI

      10.1371/journal.pone.0252207

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Breeding sake yeast and identification of mutation patterns by synchrotron light irradiation2021

    • Author(s)
      Baba Shuichiro、Hamasaki Tomohiro、Sawada Kazutaka、Orita Ryo、Nagano Yukio、Kimura Kei、Goto Masatoshi、Kobayashi Genta
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 132 Issue: 3 Pages: 265-270

    • DOI

      10.1016/j.jbiosc.2021.04.013

    • NAID

      40022687985

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Potential application of simple easy-to-use insertion-deletion (InDel) markers in citrus cultivar identification2021

    • Author(s)
      Noda Takahiro、Daiou Kaoru、Mihara Takashi、Nagano Yukio
    • Journal Title

      Breeding Science

      Volume: 71 Issue: 5 Pages: 601-608

    • DOI

      10.1270/jsbbs.21021

    • NAID

      130008127748

    • ISSN
      1344-7610, 1347-3735
    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Draft Genome Sequences of Three Strains of Pseudomonas syringae pv. eriobotryae, a Pathogen Causing Canker Disease in Loquat, Isolated in Japan2021

    • Author(s)
      Tashiro Hiroaki、Nagano Yukio、Jiromaru Ayaka、Sakaguchi Ryunosuke、Hiehata Naofumi、Fukuda Shinji
    • Journal Title

      Microbiology Resource Announcements

      Volume: 10 Issue: 1 Pages: 1-4

    • DOI

      10.1128/mra.01049-20

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Elucidation of Japanese pepper (Zanthoxylum piperitum De Candolle) domestication using RAD-Seq2021

    • Author(s)
      Premarathne Maddumage Dona Ginushika Priyadarsh、Fukutome Nami、Yamasaki Kazuaki、Hayakawa Fumiyo、Nagano Atsushi J.、Mizuno Hisataka、Ibaragi Nobuo、Nagano Yukio
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 1-16

    • DOI

      10.1038/s41598-021-85909-9

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Efforts to enhance safety measures for CRISPR/Cas-based gene drive technology in Japan2020

    • Author(s)
      Toshinori Tanaka, Nobukazu Tanaka, Yukio Nagano, Hirotaka Kanuka, Daisuke S Yamamoto, Natsuko Yamamoto, Eiji Nanba, Takumi Nishiuchi
    • Journal Title

      Journal of Environment and Safety

      Volume: 11 Issue: 2 Pages: 31-35

    • DOI

      10.11162/daikankyo.E19SC0801

    • NAID

      130007886580

    • ISSN
      1884-4375, 2186-3725
    • Year and Date
      2020-08-10
    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Development of Indel markers for the selection of Satsuma mandarin (Citrus unshiu Marc.) hybrids that can be used for low-cost genotyping with agarose gels2020

    • Author(s)
      Noda Takahiro、Daiou Kaoru、Mihara Takashi、Nagano Yukio
    • Journal Title

      Euphytica

      Volume: 216 Issue: 7 Pages: 1-13

    • DOI

      10.1007/s10681-020-02654-2

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evaluation of the population structure and phylogeography of the Japanese Genji firefly, Luciola cruciata, at the nuclear DNA level using RAD-Seq analysis2020

    • Author(s)
      Dai-ichiro Kato, Hirobumi Suzuki, Atsuhiro Tsuruta, Juri Maeda, Yoshinobu Hayashi, Kazunari Arima, Yuji Ito, Yukio Nagano
    • Journal Title

      Sci. Rep.

      Volume: 10 Issue: 1 Pages: 1533-1533

    • DOI

      10.1038/s41598-020-58324-9

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Construction of a high-density linkage map for bronze loquat using RAD-Seq2019

    • Author(s)
      Fukuda Shinji、Nagano Yukio、Matsuguma Kimitaka、Ishimoto Keiichiro、Hiehata Naofumi、Nagano Atsushi J.、Tezuka Ayumi、Yamamoto Toshiya
    • Journal Title

      Scientia Horticulturae

      Volume: 251 Pages: 59-64

    • DOI

      10.1016/j.scienta.2019.02.065

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Genetic diversity of Myanmar cattle breeds using complete mitochondrial D-loop sequence2018

    • Author(s)
      LWIN Moe、MON Su Lai Yee、NAGANO Yukio、KAWABE Kotaro、MANNEN Hideyuki、OKAMOTO Shin、SHIMOGIRI Takeshi
    • Journal Title

      The Journal of Animal Genetics

      Volume: 46 Issue: 2 Pages: 57-67

    • DOI

      10.5924/abgri.46.57

    • NAID

      130007431608

    • ISSN
      1345-9961, 1884-3883
    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genetic diversities and population structures of four popular Myanmar local cattle breeds2018

    • Author(s)
      Lwin Moe、Mon Su Lai Y.、Yamanaka Hayate、Nagano Yukio、Mannen Hideyuki、Faruque Mohammad O.、Kawabe Kotaro、Okamoto Shin、Shimogiri Takeshi
    • Journal Title

      Animal Science Journal

      Volume: 89 Issue: 12 Pages: 1648-1655

    • DOI

      10.1111/asj.13112

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The integration and application of genomic information in mangrove conservation2018

    • Author(s)
      Wee Alison K.S.、Mori Gustavo M.、Lira Catarina F.、Nunez-Farfan Juan、Takayama Koji、Faulks Leanne、Shi Suhua、Tsuda Yoshiaki、Suyama Yoshihisa、Yamamoto Takashi、Iwasaki Takaya、Nagano Yukio、Wang Zhengzhen、Watanabe Shin、Kajita Tadashi
    • Journal Title

      Conservation Biology

      Volume: 33 Issue: 1 Pages: 206-209

    • DOI

      10.1111/cobi.13140

    • NAID

      120006937751

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Physiological and molecular characterization of heat-tolerant Pyropia species from Myanmar2021

    • Author(s)
      at Htoo San、 Yoshio Kawamura、Yukio Nagano、Kei Kimura、Genta Kobayashi、San San Aye、Khin Thu Thu Min、Cherry Aung、Moe Moe Khaing
    • Organizer
      日本藻類学会第45回大会
    • Related Report
      2020 Research-status Report
  • [Presentation] Pyropia属39個体の全ゲノムレベルの多様性2021

    • Author(s)
      永野 幸生、木村 圭、小林 元太、川村 嘉応
    • Organizer
      日本藻類学会第45回大会
    • Related Report
      2020 Research-status Report
  • [Presentation] メタゲノム解析によるスサビノリ定着細菌の網羅的な検出および代謝系の解明2021

    • Author(s)
      水谷 雪乃、永野 幸生、川村 嘉応、木村 圭
    • Organizer
      日本藻類学会第45回大会
    • Related Report
      2020 Research-status Report
  • [Presentation] 温州ミカン品種交雑判定を可能にするIndelマーカーの開発と応用2020

    • Author(s)
      野田 孝博、大王 かおる、三原 崇史、永野 幸生
    • Organizer
      九州農業研究発表会
    • Related Report
      2020 Research-status Report
  • [Presentation] 無性生殖する植物は遺伝的にどう変化するか?2020

    • Author(s)
      永野幸生、山本ちひろ
    • Organizer
      日本農芸化学会 2020 大会
    • Related Report
      2019 Research-status Report
  • [Presentation] Diverse genetic resource of Zanthoxylum piperitum De Candolle (Japanese pepper) elucidated by RAD-Seq2019

    • Author(s)
      Ginushika Priyadarshani Premarathne, Nami Fukutome, Kazuaki Yamasaki, Fumiyo Hayakawa, Atsushi J. Nagano, Hisataka Mizuno, Nobuo Ibaragi, Yukio Nagano
    • Organizer
      代42回 日本分子生物学会 年会
    • Related Report
      2019 Research-status Report
  • [Presentation] 早生ウンシュウミカン2品種と極早生ウンシュウミカン6品種のDNA比較2018

    • Author(s)
      山本ちひろ、永野幸生
    • Organizer
      第42回 蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Related Report
      2018 Research-status Report
  • [Presentation] ミカン科の系統ポスター(日本語版)2018

    • Author(s)
      永野幸生、Milton Groppo、Theodor C. H. Cole
    • Organizer
      園芸学会
    • Related Report
      2018 Research-status Report
  • [Presentation] ゲノムから見えてきたカンキツの多様な世界2018

    • Author(s)
      永野幸生
    • Organizer
      くまもと在来種研究会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Remarks] 総合分析実験センター 生物資源開発部門(本庄地区)

    • URL

      http://www.iac.saga-u.ac.jp/lifescience/

    • Related Report
      2020 Research-status Report 2019 Research-status Report 2018 Research-status Report
  • [Remarks] Tiny indel markersの活用法

    • URL

      https://www.iac.saga-u.ac.jp/lifescience/InDel_markers/index.html

    • Related Report
      2020 Research-status Report

URL: 

Published: 2018-04-23   Modified: 2023-01-30  

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