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Dispersal and epidemiologiocal world map of emergent viruses

Research Project

Project/Area Number 18K05653
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 39040:Plant protection science-related
Research InstitutionSaga University

Principal Investigator

Kazusato Ohshima  佐賀大学, 農学部, 教授 (00176869)

Project Period (FY) 2018-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2019: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2018: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords分子疫学 / 新興病原ウイルス / 植物ウイルス / 拡散年代 / 世界地図 / 分子進化 / 分子時計 / 拡散 / 年代 / 日本地図 / 拡散経路
Outline of Final Research Achievements

The evolutionary and phylogeographic history of plant viruses in the world remains largely unknown because of the difficulties in sampling across large areas. Plant viruses have agricultural impacts on a global scale and resolving the timing and route of their spread can aid crop protection and inform control strategies. Here we showed that turnip mosaic virus, significant pathogens of vegetables, spread from west to east across Eurasia from about the 17th century CE. Our phylogeographic and molecular clock analyses showed that the migration pathways of this virus have retraced some of the major historical trade arteries in Eurasia, a network that formed the Silk Road. On the other hands, potato virus Y spread from Europe to other parts of the world, and Europe seemed to be a place of hub of this virus. Our studied presented a complex and detailed picture of the timescale and major transmission routes of important plant viruses.

Academic Significance and Societal Importance of the Research Achievements

スーパーコンピューターを利用することにより解析時間の短縮に成功したことから,結果を効率よく出せるようになり,IFの高い論文数報を公表することができた。植物ウイルスが,かっての交易路であるシルクロードと関係して地中海沿岸や中東地方の本ウイルスの発生中心から拡散し始めたこと,さらには17世紀ごろから大陸を西から東へ拡散し始めたことなど,歴史学上からも解明でき,また地球規模での拡散経路から,ヨーロッパが植物ウイルスのハブになっていることも明らかにできたことは,将来の植物保護への貢献,さらには今後のウイルス学の基礎的な拡散メカニズム解明などに大きな影響を与えると思われる。

Report

(5 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (36 results)

All 2021 2020 2019 2018 Other

All Int'l Joint Research (11 results) Journal Article (9 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 7 results,  Open Access: 4 results) Presentation (11 results) (of which Invited: 1 results) Remarks (5 results)

  • [Int'l Joint Research] 中国福建省農業大学(中国)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] 福建省農業森林大学/中国農業科学院/湖南大学(中国)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] シドニー大学(オーストラリア)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] キエフ大学(ウクライナ)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] カセサート大学/タイ農務省(タイ)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] MS ラマイア大学(インド)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research]

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] Onsekiz Mart University(トルコ)

    • Related Report
      2019 Research-status Report
  • [Int'l Joint Research] Australian National University(オーストラリア)

    • Related Report
      2019 Research-status Report
  • [Int'l Joint Research] University of Western Australia(オーストラリア)

    • Related Report
      2019 Research-status Report
  • [Int'l Joint Research] モザンビーク農務省(モザンビーク)

    • Related Report
      2018 Research-status Report
  • [Journal Article] Complete Genome Sequence of Isolate Bari 1, a Mild Strain of Cauliflower Mosaic Virus2021

    • Author(s)
      Ohshima Kazusato、Ishibashi Rikako、Kawakubo Shusuke
    • Journal Title

      Microbiology Resource Announcements

      Volume: 10 Issue: 27

    • DOI

      10.1128/mra.00534-21

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genomic Epidemiology and Evolution of Scallion Mosaic Potyvirus From Asymptomatic Wild Japanese Garlic2021

    • Author(s)
      Ohshima Kazusato、Kawakubo Shusuke、Muraoka Satoshi、Gao Fangluan、Ishimaru Kanji、Kayashima Tomoko、Fukuda Shinji
    • Journal Title

      Frontiers in Microbiology

      Volume: 12

    • DOI

      10.3389/fmicb.2021.789596

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genomic analysis of the brassica pathogen turnip mosaic potyvirus reveals its spread along the former trade routes of the Silk Road2021

    • Author(s)
      Kawakubo Shusuke, Gao Fangluan, Li Shifang, Tan Zhongyang, Huang Ying-Kun, Adkar-Purushothama Charith Raj, Gurikar Chennappa, Maneechoat Phoowanarth, Chiemsombat Pissawan, Aye Seint San, Furuya Naruto, Shevchenko Oleksiy, Spak Josef, Skoric Dijana, Ho Simon Y. W., Ohshima Kazusato
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 118 Issue: 12

    • DOI

      10.1073/pnas.2021221118

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The evolutionary history and global spatio-temporal dynamics of potato virus Y2020

    • Author(s)
      Gao Fangluan, Kawakubo Shusuke, Ho Simon Y W, Ohshima Kazusato
    • Journal Title

      Virus Evolution

      Volume: 6 Issue: 2

    • DOI

      10.1093/ve/veaa056

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The phylogenetic relationships and genetic structure of populationsof Turnip mosaic virus in Turkey.2020

    • Author(s)
      Korkmaz S, Cevik B, Karanfil A, Onder S, Ohshima K.
    • Journal Title

      European Journal of Plant Pathology

      Volume: 156 Issue: 2 Pages: 559-569

    • DOI

      10.1007/s10658-019-01905-w

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] The potyviruses: An evolutionary synthesis is emerging2020

    • Author(s)
      Gibbs AJ, Hajizadeh M, Ohshima K, Jones RAC
    • Journal Title

      Viruses

      Volume: 12(2) Issue: 2 Pages: 132-132

    • DOI

      10.3390/v12020132

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] 分子系統と分岐年代解析法2019

    • Author(s)
      川久保修佑・大島一里
    • Journal Title

      植物感染生理談話会論文集

      Volume: 54 Pages: 109-118

    • Related Report
      2019 Research-status Report
  • [Journal Article] Pepper veinal mottle virus in Japan is closely related to isolates from other Asian countries, butmore distantly to most of those from Africa.2019

    • Author(s)
      Laina JA, Matsumoto K, Setoyama T, Kawano S, Ohshima K.
    • Journal Title

      Virus Genes

      Volume: 未定 Issue: 3 Pages: 347-355

    • DOI

      10.1007/s11262-019-01656-0

    • Related Report
      2018 Research-status Report
  • [Journal Article] Effects of infection by Turnip mosaic virus on the population growth of generalist and specialist aphid vectors on turnip plants2018

    • Author(s)
      Adachi Shuhei、Honma Tomoki、Yasaka Ryosuke、Ohshima Kazusato、Tokuda Makoto
    • Journal Title

      PLOS ONE

      Volume: 13 Issue: 7 Pages: e0200784-e0200784

    • DOI

      10.1371/journal.pone.0200784

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Presentation] 全国の無症状ノビルに感染していたノビルモザイクウイルスの分子疫学2021

    • Author(s)
      大島一里・川久保修佑・村岡聡史・Fangluan Gao・石丸幹二・萱島知子・福田伸二
    • Organizer
      日本植物病理学会九州部会
    • Related Report
      2021 Annual Research Report
  • [Presentation] カブモザイクウイルスはかつての交易路を辿って拡散してきた2021

    • Author(s)
      川久保修佑・大島一里
    • Organizer
      日本植物病理学会本大会
    • Related Report
      2021 Annual Research Report 2020 Research-status Report
  • [Presentation] カブモザイクウイルスの地球規模でのゲノム型パターン2021

    • Author(s)
      石橋璃可子・大島一里
    • Organizer
      日本植物病理学会本大会
    • Related Report
      2021 Annual Research Report 2020 Research-status Report
  • [Presentation] カブモザイクウイルス日本産分離株の組換え年代推定2020

    • Author(s)
      川久保修佑・大島一里
    • Organizer
      日本植物病理学会九州部会
    • Related Report
      2020 Research-status Report
  • [Presentation] カリフラワーモザイクウイルス Bari 1 分離株の全ゲノム構造2020

    • Author(s)
      石橋璃可子・大島一里
    • Organizer
      日本植物病理学会九州部会
    • Related Report
      2020 Research-status Report
  • [Presentation] カブモザイクウイルスの連続空間における継時的拡散速度解析2020

    • Author(s)
      川久保 修佑・大島 一里
    • Organizer
      日本植物病理学会
    • Related Report
      2019 Research-status Report
  • [Presentation] ポティウイルス外被タンパク質遺伝子配列の拡散経路解析における可能性:カブモザイクウイルスを例として2020

    • Author(s)
      石橋璃可子・川久保修佑・大島一里
    • Organizer
      日本植物病理学会
    • Related Report
      2019 Research-status Report
  • [Presentation] 分子系統と分岐年代解析法2019

    • Author(s)
      川久保修佑・大島一里
    • Organizer
      日本植物病理学会植物感染生理談話会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] カブモザイクウイルス日本集団の組換え型2019

    • Author(s)
      松岡弘記・冨高保弘・大島一里
    • Organizer
      日本植物病理学会
    • Related Report
      2018 Research-status Report
  • [Presentation] カブモザイクウイルスの進化速度推定2019

    • Author(s)
      川久保修佑・大島一里
    • Organizer
      日本植物病理学会
    • Related Report
      2018 Research-status Report
  • [Presentation] 東アジア諸国におけるカブモザイクウイルスの組換え体について2018

    • Author(s)
      平野優徳・松岡弘記・大島一里
    • Organizer
      日本植物病理学会九州部会
    • Related Report
      2018 Research-status Report
  • [Remarks] 植物ウイルス病制御学分野

    • URL

      https://www.ag.saga-u.ac.jp/main/67.html

    • Related Report
      2020 Research-status Report
  • [Remarks] 植物ウイルス病制御学研究室 (大島一里研究室)

    • URL

      http://plantvirology.ag.saga-u.ac.jp/

    • Related Report
      2020 Research-status Report
  • [Remarks] 植物ウイルス病制御学研究室 (大島一里研究室) のホームページで公表論文

    • URL

      http://plantvirology.ag.saga-u.ac.jp/sub3.html

    • Related Report
      2019 Research-status Report
  • [Remarks] 佐賀大学農学部植物ウイルス病制御学ホームページ

    • URL

      http://plantvirology.ag.saga-u.ac.jp/

    • Related Report
      2018 Research-status Report
  • [Remarks] 佐賀大学教員活動データベース

    • URL

      http://research.dl.saga-u.ac.jp/profile/ja.d9e4832763b5fa2d59c123490551be02.html

    • Related Report
      2018 Research-status Report

URL: 

Published: 2018-04-23   Modified: 2023-01-30  

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