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Comparison of environmental DNA detection methods and seasonal variation for aquatic insect communities

Research Project

Project/Area Number 18K13858
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 22060:Environmental systems for civil engineering-related
Research InstitutionUniversity of Yamanashi

Principal Investigator

YAEGASHI Sakiko  山梨大学, 大学院総合研究部, 助教 (30756648)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2020: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2019: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2018: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords水生昆虫 / 環境DNA / DNAバーコーディング
Outline of Final Research Achievements

Environmental DNA (eDNA) is released into the water by aquatic animals and is employed for biodiversity surveys in an aquatic environment. Especially, the eDNA barcoding method that combines amplicon analysis by high-throughput DNA sequencer and DNA barcoding is getting attention as a new and easy method for surveying aquatic organisms. Although this method has been developed for fish communities, there are a few studies on aquatic insects, which are indicator organisms for anthropogenic disturbance such as water pollution and flow control. In this study, I examined the methods of eDNA barcoding for aquatic insects and investigated their seasonal variation by eDNA barcoding.

Academic Significance and Societal Importance of the Research Achievements

環境DNAを利用した水圏生物調査は採水とDNA分析をもとに行われることから、従来型の調査手法と比べて低労力かつ素早い調査手法として注目されている。この手法は魚類では多く研究開発が行われているが、人為的な水圏環境改変の指標生物として利用される水生昆虫では研究が不足している。そこで本研究では、環境DNAの濃縮方法やPCR手法など、より効果的に水生昆虫群集調査を行うことができる環境DNAのバーコーディング手法を検討した。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (23 results)

All 2020 2019 2018 Other

All Journal Article (4 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 4 results,  Open Access: 3 results) Presentation (18 results) (of which Int'l Joint Research: 3 results) Remarks (1 results)

  • [Journal Article] Spatial Genetic Structure of the Invasive Riparian Tree Robinia pseudoacacia to Determine Migration Patterns to Inform Best Practices for Riparian Restoration2020

    • Author(s)
      Yaegashi, S., T. Omura, and K. Watanabe
    • Journal Title

      AoB PLANTS

      Volume: 12(5) Issue: 5

    • DOI

      10.1093/aobpla/plaa043

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Detection of Adaptive Divergence in Populations of the Stream Mayfly Ephemera strigata with Machine Learning2020

    • Author(s)
      Li, B., S. Yaegashi, T. M. Carvajal, M. Gamboa and K. Watanabe
    • Journal Title

      Ecology and Evolution

      Volume: 10 (13) Issue: 13 Pages: 6677-6687

    • DOI

      10.1002/ece3.6398

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Fine-Scale Population Genetic Structure of Dengue Mosquito Vector, Aedes aegypti in Metropolitan Manila, Philippines2020

    • Author(s)
      Carvajal, T. M., K. Ogishi, S. Yaegashi, L. F. T. Hernandez, K. M. Viacrusis, H. T. Ho, D. Amalin, and K. Watanabe
    • Journal Title

      PLOS Neglected Tropical Diseases

      Volume: 4 Issue: 5 Pages: e0008279-e0008279

    • DOI

      10.1371/journal.pntd.0008279

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The effect of storm event on detection the species diversity of insects using environmental DNA meta-barcoding2020

    • Author(s)
      Sakiko YAEGASHI, Mohd Saifu Farhan Bin Tahir, Hirokazu HAGA
    • Journal Title

      Proceedings of the 22nd IAHR-APD Congress 2020

      Volume: 22

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Presentation] バイオアッセイの未来~水生昆虫を対象にした環境DNA 解析の観点から2020

    • Author(s)
      八重樫咲子
    • Organizer
      第24回日本水環境学会シンポジウム
    • Related Report
      2020 Annual Research Report
  • [Presentation] The effect of storm event on detection the species diversity of insects using environmental DNA meta-barcoding2020

    • Author(s)
      SAKIKO YAEGASHI, MOHD SAIFUL FARHAN BIN TAHIR, HIROKAZU HAGA
    • Organizer
      22nd IAHR-APD Congress in Sapporo
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 甲府盆地を流下する河川における侵略的外来種ハリエンジュの遺伝子流動2020

    • Author(s)
      八重樫咲子,宮沢直季
    • Organizer
      応用生態工学会2020年度Web研究発表会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 環境DNA のメタバーコーディングによる水生昆虫群集調査2020

    • Author(s)
      八重樫咲子
    • Organizer
      第56回日本水環境学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 甲府盆地における台風19号による出水が底生動物に与えた影響の調査2020

    • Author(s)
      鈴木航希, 新井涼介,金子栄廣,八重樫咲子
    • Organizer
      第56回日本水環境学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 河川水中の環境DNAを利用した水生昆虫類の種多様性調査甲府盆地を対象として2020

    • Author(s)
      八重樫咲子・有賀廣弥・伊藤正比呂・金子栄廣
    • Organizer
      環境DNA学会第3回大会・第36回個体群生態学会大会合同大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Investigating the effect of storm on estimating aquatic insect community in water stream using environmental DNA2020

    • Author(s)
      Tahir Mohd Saifu Farhan Bin, Sakiko Yaegashi, Hidehiro Kaneko, Hirokazu Haga
    • Organizer
      第47回関東支部技術研究発表会
    • Related Report
      2019 Research-status Report
  • [Presentation] 塩川ダムによる河川環境の変化が水生昆虫群集に与える影響2020

    • Author(s)
      金子 栄廣・有賀 廣弥・八重樫 咲子
    • Organizer
      第47回関東支部技術研究発表会
    • Related Report
      2019 Research-status Report
  • [Presentation] 環境DNAバーコーディング解析を用いた河川水生昆虫の種多様性の解明 高知県四万十川を例として2019

    • Author(s)
      八重樫咲子・細川大樹・渡辺幸三
    • Organizer
      応用生態工学会第23回広島大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 四万十川と仁淀川の環境DNA及び底生動物群集のメタバーコーディング解析2019

    • Author(s)
      石谷直渡・八重樫咲子・Joeselle M. S・Somar I. F.・渡辺幸三
    • Organizer
      応用生態工学会第23回広島大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 環境DNAを利用した水生昆虫調査2019

    • Author(s)
      八重樫咲子
    • Organizer
      第43回水生昆虫研究会岐阜・恵那大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 山梨県富士川水系における水生昆虫の流域内種多様性の評価2019

    • Author(s)
      八重樫咲子、新井涼介、金子栄廣
    • Organizer
      環境工学研究フォーラム講演集
    • Related Report
      2019 Research-status Report
  • [Presentation] ダムによる流量改変が水生昆虫種多様性にもたらす影響の評価2019

    • Author(s)
      新井涼介、清水隆二、金子栄廣、八重樫咲子
    • Organizer
      第53回日本水環境学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] 山梨県内におけるヒゲナガカワトビケラの集団遺伝特性の解析2019

    • Author(s)
      清水隆二、新井涼介、金子栄廣、八重樫咲子
    • Organizer
      第53回日本水環境学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] マイクロサテライトマーカーを利用した環境DNAの種特異的PCRによる水生生物の生息域検索2018

    • Author(s)
      八重樫咲子、清水隆二、村松和十
    • Organizer
      応用生態工学会第22回東京大会
    • Related Report
      2018 Research-status Report
  • [Presentation] GENETIC STRUCTURE AND GENE FLOW BETWEEN ALTITUDINALLY ISOLATED POPULATIONS OF STENOPSYCHE MARMORATA2018

    • Author(s)
      Sakiko YAEGASHI, Kozo WATANABE, Michael T. MONAGHAN, Tatsuo OMURA
    • Organizer
      12th International Symposium on Ecohydraulics
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] The search for the Habitats of Aquatic Caddisfly Stenopsyche marmorata (Trichoptera) from Environmental DNA using Species-specific Microsatellite Markers2018

    • Author(s)
      Sakiko YAEGASHI, Kazuto MURAMATSU
    • Organizer
      The Water and Environment Technology Conference 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 環境DNAを利用した水生昆虫の生息域検索2018

    • Author(s)
      八重樫咲子、村松和十
    • Organizer
      第5回環境水質工学シンポジウム
    • Related Report
      2018 Research-status Report
  • [Remarks] 山梨大学 教員情報検索

    • URL

      http://nerdb-re.yamanashi.ac.jp/Profiles/338/0033748/profile.html

    • Related Report
      2018 Research-status Report

URL: 

Published: 2018-04-23   Modified: 2022-01-27  

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