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Developmental and Evolutionary Analysis of Ancient Fish (Polypterus)

Research Project

Project/Area Number 19310125
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 基礎ゲノム科学
Research InstitutionNational Institute for Basic Biology

Principal Investigator

NARUSE Kiyoshi  National Institute for Basic Biology, 形質転換生物研究施設, 准教授 (50208089)

Co-Investigator(Kenkyū-buntansha) OKABE Masataka  東京慈恵会医科大学, 医学部, 教授 (10300716)
Project Period (FY) 2007 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥20,150,000 (Direct Cost: ¥15,500,000、Indirect Cost: ¥4,650,000)
Fiscal Year 2009: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2008: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2007: ¥7,670,000 (Direct Cost: ¥5,900,000、Indirect Cost: ¥1,770,000)
Keywordsゲノム進化・再編 / 古代魚 / ゲノム進化 / 条鰭類 / 肉鰭類 / ゲノム重複 / ポリプテルスセネガルス / 肺発生カスケード / エンハンサー
Research Abstract

Establishment of cultured cell line : We have been established the primary cell culture from fin, kidney and embryos of Polypterus senegalus. Initial phase of cell culture, cells were growing well. After several passages, most of cells were rabidly dying by apoptosis. This phenomenon was observed in fins, kidney and embryo. Although we have changed several culture conditions such as medium and collagen coated dish, all efforts were not successful.
Construction of fosmid library and evolutionary genetic analysis : We have constructed the Polypterus genomic library with fosmid vector system. Independent colony members of this library reached over 500,000. After PCR screening of three genes (Gcm2、Elovl5、Fbox93), single positive clone with the Elovl5 gene was identified. This result suggests the genome coverage of this fosmid library was not high enough for isolation of arbitral genes in Polypterus genome.

Report

(4 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (20 results)

All 2010 2009 2007

All Journal Article (8 results) (of which Peer Reviewed: 5 results) Presentation (8 results) Book (4 results)

  • [Journal Article] Germ layer patterning in bichir and lamprey; An insight into its evolution in vertebrates.2009

    • Author(s)
      Takeuchi M, Takahashi M, Kuratani S, Okabe M, Aizawa, S
    • Journal Title

      Dev Biol. 332(1)

      Pages: 90-102

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Integration of human mesenchymal stem cells into the Wolffian duct in chicken embryos.2009

    • Author(s)
      Fukui A, Yokoo T, Matsumoto K, Kawamura T, Hosoya T, Okabe M
    • Journal Title

      Biochem Biophys Res Commun. 385(3)

      Pages: 330-335

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Germ layer patterning in bichir and lamprey ; An insight into its evolution in vertebrates2009

    • Author(s)
      Takeuchi M, Takahashi M, Kuratani S, Okabe M, Aizawa, S.
    • Journal Title

      Dev Biol 332(1)

      Pages: 90-102

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article]2009

    • Author(s)
      Takeuchi, M., Okabe, M., Aizawa S.
    • Journal Title

      The Genus Polypterus(Bichirs)(Cold Spring Harbor Laboratory Press)

      Pages: 447-467

    • Related Report
      2009 Annual Research Report
  • [Journal Article]2009

    • Author(s)
      Takeuchi, M., Okabe, M., Aizawa S.
    • Journal Title

      Whole-Mount In Situ Hybridization of Bichir(Polypterus)Embryos(Cold Spring Harbor Laboratory Press)

      Pages: 458-459

    • Related Report
      2009 Annual Research Report
  • [Journal Article]2009

    • Author(s)
      Takeuchi, M., Okabe, M., Aizawa S.
    • Journal Title

      Microinjection of Bichir(Polypterus)Embryos(Cold Spring Harbor Laboratory Press)

      Pages: 460-462

    • Related Report
      2009 Annual Research Report
  • [Journal Article] The medaka draft genome and insights into vertebrate genome evolution.2007

    • Author(s)
      Kasahara, M, Naruse, K, et. al
    • Journal Title

      Nature 446

      Pages: 714-719

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The medaka draft genome and insights into vertebrate genome evolution2007

    • Author(s)
      Kasahara, M., Naruse, K., et. al.
    • Journal Title

      Nature 446

      Pages: 714-719

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] 呼吸器の構造進化~脊椎動物の上陸の前後~2010

    • Author(s)
      岡部正隆
    • Organizer
      第115回日本解剖学会総会・全国学術集会
    • Year and Date
      2010-03-28
    • Related Report
      2009 Final Research Report
  • [Presentation] EVOLUTION OF THE VERTEBRATE PHARYNX.2009

    • Author(s)
      Masataka Okabe
    • Organizer
      The 36th Congress of the International Union of Physiological Sciences.
    • Year and Date
      2009-07-31
    • Related Report
      2009 Final Research Report
  • [Presentation] 脊椎動物の上陸と咽頭の形態進化2009

    • Author(s)
      岡部正隆
    • Organizer
      第50回日本組織細胞化学会総会・学術集会
    • Related Report
      2009 Final Research Report
  • [Presentation] Transition from Aquatic to Terrestrial Life And Evolution of the Vetebrate Prarynx.2009

    • Author(s)
      Masataka Okabe
    • Organizer
      THE XIth OXFORD CONFERENCE ON MODELLING AND CONTROL OF BREATHING-NEW FRONTIERS IN RESPIRATORY CONTROL-呼吸調節研究における新展開
    • Related Report
      2009 Final Research Report
  • [Presentation] Transition from Aquatic to Terrestrial Life And Evolution of the Vetebrate Prarynx.2009

    • Author(s)
      Masakata Okabe
    • Organizer
      he 3rd International Symposium of the Biodiversity & Evolution Global COE Project.
    • Related Report
      2009 Final Research Report
  • [Presentation] Transition from Aquatic to Terrestrial Life And Evolution of the Vetebrate Prarynx2009

    • Author(s)
      Okabe, M.
    • Organizer
      THE XIth OXFORD CONFERENCE ON MODELLING AND CONTROL OF BREATHING-NEW FRONTIERS IN RESPIRATORY CONTROL
    • Place of Presentation
      Noh Theater, Nara Park(Nara)
    • Related Report
      2009 Annual Research Report
  • [Presentation] Transition from Aquatic to Terrestrial Life And Evolution of the Vetebrate Prarynx2009

    • Author(s)
      Okabe, M.
    • Organizer
      The 3rd International Symposium of the Biodiversity & Evolution Global COE Project
    • Place of Presentation
      Kyodai-Kaikan(Kyoto)
    • Related Report
      2009 Annual Research Report
  • [Presentation] Establishment of medaka full length cDNA resources-An activity of NBRP medaka-2009

    • Author(s)
      K. Naruse, Y. Yoshimura, et al.
    • Organizer
      Fish genome meeting 2009
    • Place of Presentation
      Hinxton、UK
    • Related Report
      2008 Annual Research Report
  • [Book] Management, and Experimental Protocols.2009

    • Author(s)
      Kinoshita, M, Murata, K, Naruse, K, Tanaka, M Medaka
    • Publisher
      Biology
    • Related Report
      2009 Final Research Report
  • [Book] A Fish Group Diverged at the Stem of Ray-Finned Fishes (Actinopterygii)2009

    • Author(s)
      Takeuchi M, Okabe M, Aizawa S. The Genus Polypterus (Bichirs)
    • Publisher
      CSH Protocols
    • Related Report
      2009 Final Research Report
  • [Book] Whole-Mount In Situ Hybridization of Bichir (Polypterus) Embryos2009

    • Author(s)
      Takeuchi M, Okabe M, Aizawa S
    • Publisher
      CSH Protocols
    • Related Report
      2009 Final Research Report
  • [Book] Microinjection of Bichir (Polypterus) Embryos2009

    • Author(s)
      Takeuchi M, Okabe M, Aizawa S
    • Publisher
      CSH Protocols
    • Related Report
      2009 Final Research Report

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Published: 2007-04-01   Modified: 2016-04-21  

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