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Human proteomics by the high-powered RFHR 2D PAGE for detection of protein changes resistant to anticancer agents

Research Project

Project/Area Number 19310132
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied genomics
Research InstitutionYoshida Biological Laboratry, Bio-informatics section (2008-2009)
Osaka Medical College (2007)

Principal Investigator

WADA Akira  Yoshida Biological Laboratry, Bio-informatics section, バイオ情報研究部門, 部門長 (80025387)

Co-Investigator(Kenkyū-buntansha) WADA Chieko  株式会社吉田生物研究所, バイオ情報研究部門, 室長 (10175698)
UETA Masami  株式会社吉田生物研究所, バイオ情報研究部門, 研究員 (30512511)
SAKAI Akiko  大阪医科大学, 医学部, 助教 (30225750)
YOSHIDA Hideji  大阪医科大学, 医学部, 準教授 (60288735)
MAKI Yasushi  大阪医科大学, 医学部, 講師 (60401733)
TANIGAWA Nobuhiko  大阪医科大学, 医学部, 教授 (00111956)
FURUYA Eisuke  大阪医科大学, 医学部, 教授 (00028523)
Project Period (FY) 2007 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥19,500,000 (Direct Cost: ¥15,000,000、Indirect Cost: ¥4,500,000)
Fiscal Year 2009: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2008: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2007: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
Keywords大腸癌 / 胃癌 / リボソーム / 抗癌剤抵抗性 / RFHR法 / プロテオーム / 塩基性蛋白質 / 大腸がん / RFHR二次元電気泳動
Research Abstract

RFHR 2D PAGE which we improved has no pI limitation of analized proteins, and has high separation ability for basic proteins. The RFHR method was applied for identification of proteins in DLD-1 cells derived from colon cancer tissues. Eight proteins which changed in accompanying with acquisition of resistance against anticancer reagent 5FU were identified. Furthermore, stoichiometry of human ribosomal proteins was carried out, The results showed that one ribosomal particle has only 63 protein molecules among total 79 ribosomal proteins.

Report

(4 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (37 results)

All 2010 2009 2008 2007 Other

All Journal Article (17 results) (of which Peer Reviewed: 10 results) Presentation (19 results) Remarks (1 results)

  • [Journal Article] Structure of 100S ribosome in the hibernation stage revealed by electron microscopy2010

    • Author(s)
      Takayuki Kato, Hideji Yoshida, Tomoko Miyata, Yasushi Maki, Akira Wada, Keiichi Namba
    • Journal Title

      Structure 18

      Pages: 719-724

    • Related Report
      2009 Final Research Report
  • [Journal Article] Formation of 100S ribosome in Staphylococcus aureus by the hibernation promoting factor homolog SaHPF.2010

    • Author(s)
      Masami Ueta, Chieko Wada, Akira Wada
    • Journal Title

      Genes to Cells 15

      Pages: 43-58

    • Related Report
      2009 Final Research Report
  • [Journal Article] The involvement of a PPR protein of the P Subfamily in partial RNA editing of an Arabidopsis mitochondrial transcript.2010

    • Author(s)
      Yoko Doniwa, Minoru Ueda, Masami Ueta, Akira Wada, Koh-ichi Kadowaki, Nobuhiro Tsutsumi
    • Journal Title

      Genes 454

      Pages: 39-46

    • Related Report
      2009 Final Research Report
  • [Journal Article] Structure of the 100S ribosome in the hibernation stage revealed by electron cryomicroscopy2010

    • Author(s)
      Takayuki Kato, Hideji Yoshida, Akira Wada, Keiichi Namba, et al.
    • Journal Title

      Structure 18

      Pages: 719-724

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Formation of 100S ribosome in Staphylococcus aureus by the hibernation promoting factor homolog SaHPF2010

    • Author(s)
      Masami Ueta, Chieko Wada, Akira Wada
    • Journal Title

      Genes to Cells 15

      Pages: 43-58

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The involvement of a PPR protein of the P Subfamily in partial RNA editing of an Arabidopsis mitochondrial transcript.2010

    • Author(s)
      Yoko Doniwa, Minoru Ueda, Masami Ueta, Akira Wada, Koh-ichi Kadowaki, Nobuhiro Tsutsumi.
    • Journal Title

      Genes 454

      Pages: 39-46

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Purification and characterization of α-galactosidase I from Bifidobacterium longum subsp. longum JCM 70522010

    • Author(s)
      Naoko Saishin, Masami Ueta, Akira Wada, Isamu Yamamoto
    • Journal Title

      Journal of Biological Macromolecules 10

      Pages: 13-22

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Properties of β-galactosidase purified from Bifidobacterium longum subsp. longum JCM 7052 grown on gum arabic.2010

    • Author(s)
      Naoko Saishin, Masami Ueta, Akira Wada, Isamu Yamamoto
    • Journal Title

      Journal of Biological Macromolecules 10

      Pages: 23-31

    • NAID

      40017272077

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Solution structure of the E. coli ribosome hibernation promoting factor HPF : Implication for the relationship between structure and function.2009

    • Author(s)
      Akiko Sato, Takumi Watanabe, Yasushi Maki, Masami Ueta, Hideji Yoshida, Yutaka Ito, Akira Wada, Masaki Mishima
    • Journal Title

      B.B.R.C. 389

      Pages: 580-589

    • Related Report
      2009 Final Research Report
  • [Journal Article] Proteomic analysis of the basic proteins in 5-fluorouracil resistance of human colon cancer cell line using the RFHR 2D PAGE.2009

    • Author(s)
      Satoru Tanaka, Akiko Sakai, Kousei Kimura, Hideji Yoshida, Hideo Fushitani, Akihiko Ogata, Akiko Miyamoto, Masakazu Fukushima, Akira Wada, Nobuhiko Tanigawa
    • Journal Title

      International J. Oncology 33

      Pages: 361-370

    • Related Report
      2009 Final Research Report
  • [Journal Article] Activities of Escherichia coli ribosomes in IF3 and RMF change to prepare 100S ribosome formation on entering the stationary growth phase.2009

    • Author(s)
      Hideji Yoshida, Masami Ueta, Akira Wada
    • Journal Title

      Genes to Cells 14

      Pages: 271-280

    • Related Report
      2009 Final Research Report
  • [Journal Article] Solution structure of the E.coli ribosome hibernation promoting factor HPF : Implications for the relationship between structure and function2009

    • Author(s)
      Akiko Sato, Masami Ueta, Akira Wada, Masaki Mishima, et al.
    • Journal Title

      Biochem. Biophys. Res.Commun. 389

      Pages: 580-585

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Activities of Escherichia coli ribosomes in IF3 and RMF change to prepare 100S ribosome formation on entering the stationary growth phase.2009

    • Author(s)
      Hideji Yoshida, Masami Ueta, Akira Wada.
    • Journal Title

      Genes to Cells 14

      Pages: 271-280

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Proteomic analysis of the basic proteins in 5-fluorouracil resistance of human colon cancer cell line using the radical-free and highly reducing 2D PAGE2009

    • Author(s)
      Satoru Tanaka, Akira Wada
    • Journal Title

      International Journal of Oncology 33

      Pages: 361-370

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Activities of Escherichia coli ribosomes in IF3 and RMF change to prepare 100S ribosome formation on entering the stationary growth phase2009

    • Author(s)
      Hideji Yoshida, Masami Ueta, Akira Wada
    • Journal Title

      Genes to Cells 14

      Pages: 271-280

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Wada. Role of HPF (Hibernation Promoting Factor) in translational activity in Escherichia coli.2008

    • Author(s)
      Masami Ueta, Ryousuke L. Ohniwa, Hideji Yoshida, Yasushi Maki, Akira Wada
    • Journal Title

      J. Biochem. 143

      Pages: 425-433

    • Related Report
      2009 Final Research Report
  • [Journal Article] Role of HPF(Hibernation promoting factor) on translational activity2008

    • Author(s)
      Masami Ueta
    • Journal Title

      J.Biochemistry 143

      Pages: 425-433

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] Structual analysis of 100S ribosome by cryoEM : tRNA binding.2009

    • Author(s)
      Hideji Yoshida, Takayuki Kato, Yasushi Maki, Shou Furuike, Masami Ueta, Akiko Sakai, Akira Wada, Keiichi Namba
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-10
    • Related Report
      2009 Final Research Report
  • [Presentation] Formation of 100S ribosome by HPF (hibernation promoting factor) homolog in Staphylococcus aureus.2009

    • Author(s)
      Masami Ueta, Chieko Wada, Akira Wada
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-10
    • Related Report
      2009 Final Research Report
  • [Presentation] Formation of 100S ribosome by HPF(hibernation promoting factor)homolog in Staphylococcus aureus2009

    • Author(s)
      Masami Ueta, Chieko Wada, Akira Wada
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] Structural analysis of 100S ribosome by cryoEM : tRNA binding2009

    • Author(s)
      Hideji Yoshida, Takayuki Kato, Yasushi Maki, Shou Furuike, Masami Ueta, Akiko Sakai, Akira Wada, Keiichi Namba
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] Structural analysis of 100S ribosome by cryoEM using a GraFix method2009

    • Author(s)
      Takayuki Kato, Hideji Yoshida, Yasushi Maki, Shou Furuike, Masami Ueta, Akiko Sakai, Akira Wada, Keiichi Namba
    • Organizer
      第11回RNAミーティング
    • Place of Presentation
      新潟市朱鷺メッセ
    • Year and Date
      2009-07-29
    • Related Report
      2009 Annual Research Report
  • [Presentation] Change of ribosomal structure dependent on growth phase in Staphylococcus aureus~formation of 100S ribosome~2009

    • Author(s)
      Masami Ueta, Chieko Wada, Hideji Yoshida, Yasushi Maki, Akira Wada
    • Organizer
      第11回RNAミーティング
    • Place of Presentation
      新潟市朱鷺メッセ
    • Year and Date
      2009-07-29
    • Related Report
      2009 Annual Research Report
  • [Presentation] 増殖段階に依存するStaphylococcus aureusリボソームの構造変化2009

    • Author(s)
      上田雅美、和田千恵子、吉田秀司、牧泰史、和田明
    • Organizer
      第11回日本rna学会年会
    • Place of Presentation
      新潟市朱鷺メッセ
    • Year and Date
      2009-07-27
    • Related Report
      2009 Final Research Report
  • [Presentation] バクテリアの翻訳活性におけるリボソーム結合蛋白質2008

    • Author(s)
      上田雅美、和田千恵子、和田明
    • Organizer
      第31回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド国際会議場
    • Year and Date
      2008-12-11
    • Related Report
      2009 Final Research Report
  • [Presentation] 大腸菌リボソームの休眠を促進する蛋白質hpfの構造解析2008

    • Author(s)
      佐藤明子、永井義崇、渡辺拓実、上田雅美、牧泰史、伊藤隆、和田明、三島正規
    • Organizer
      第31回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド国際会議場
    • Year and Date
      2008-12-11
    • Related Report
      2009 Final Research Report
  • [Presentation] 生物種に広く保存されているJmjCドメインを持つ大腸菌蛋白質(YcfD)機能解析2008

    • Author(s)
      和田千恵子、白石慧、竹安邦夫、和田明、上田雅美
    • Organizer
      第31回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド国際会議場
    • Year and Date
      2008-12-11
    • Related Report
      2009 Final Research Report
  • [Presentation] バクテリアの翻訳活性におけるリボソーム結合蛋白質2008

    • Author(s)
      上田雅美, 和田千恵子, 和田明
    • Organizer
      第31回日本分子生物学会・第81回日本化学会合同年会
    • Place of Presentation
      神戸ポートアイランド国際会議場
    • Year and Date
      2008-12-11
    • Related Report
      2008 Annual Research Report
  • [Presentation] バクテリア蛋白合成におけるHPF (hibernation promoting factor)の機能解析2008

    • Author(s)
      上田雅美、吉田秀司、牧泰史、和田千恵子、和田明
    • Organizer
      第10回日本rna学会年会
    • Place of Presentation
      札幌市札幌コンベンションセンター
    • Year and Date
      2008-07-23
    • Related Report
      2009 Final Research Report
  • [Presentation] 100sリボソームとif3の関係2007

    • Author(s)
      吉田秀司、上田雅美、牧泰史、境晶子、和田明
    • Organizer
      第30回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-14
    • Related Report
      2009 Final Research Report
  • [Presentation] Hibernation promoting factor HPFは100Sribosome形成を促進しpolyU存在下phenylalanineの取り込みを阻害する2007

    • Author(s)
      上田雅美、大庭良介、吉田秀司、牧泰史、和田千恵子、和田明
    • Organizer
      第30回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-14
    • Related Report
      2009 Final Research Report
  • [Presentation] 100SリボソームとIF3の関係2007

    • Author(s)
      吉田 秀司
    • Organizer
      第30回日本分子生物学会・第80回日本生化学会合同大会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-13
    • Related Report
      2007 Annual Research Report
  • [Presentation] HPFは100S形成を促進し、polyU-Pheの取り込みを阻害する2007

    • Author(s)
      上田 雅美
    • Organizer
      第30回日本分子生物学会・第80回日本生化学会合同大会
    • Place of Presentation
      パシンィコ横浜
    • Year and Date
      2007-12-13
    • Related Report
      2007 Annual Research Report
  • [Presentation] 超好熱古細菌パイロコッカスにおけるクロマチン構成蛋白質のプロテオーム2007

    • Author(s)
      松永 藤彦
    • Organizer
      第30回日本分子生物学会・第80回日本生化学会合同大会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-12
    • Related Report
      2007 Annual Research Report
  • [Presentation] バクテリア増殖再開時のトランスクリプトーム解析2007

    • Author(s)
      牧 泰史
    • Organizer
      第30回日本分子生物学会・第80回日本生化学会合同大会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-11
    • Related Report
      2007 Annual Research Report
  • [Presentation] Hibernation promoting factor HPFの翻訳における役割と系統解析2007

    • Author(s)
      上田雅美、大庭良介、吉田秀司、牧泰史、和田千恵子、和田明
    • Organizer
      第9回日本rna学会年会
    • Place of Presentation
      名古屋市名古屋国際会議場
    • Year and Date
      2007-07-30
    • Related Report
      2009 Final Research Report
  • [Remarks]

    • Related Report
      2009 Final Research Report

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Published: 2007-04-01   Modified: 2016-04-21  

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