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Proteomics approach to discover biomarker for kidney transplant rejection

Research Project

Project/Area Number 19591885
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Urology
Research InstitutionKitasato University

Principal Investigator

YOSHIDA Kazunari  Kitasato University, 医学部, 准教授 (10174921)

Co-Investigator(Kenkyū-buntansha) TAKEUCHI Yasuo  北里大学, 医学部, 講師 (60286359)
OISHI Masamichi  北里大学, 理学部, 講師 (40233027)
KODERA Yoshio  北里大学, 理学部, 准教授 (60265733)
BABA Shiro  北里大学, 医学部, 教授 (00051889)
OKUSA Hiroshi  北里大学, 医学部, 助教 (70337963)
MAEDA Tadakazu  北里大学, 理学部, 教授 (90265728)
MURAMOTO Masatoshi  北里大学, 医学部, 助教 (50265633)
Project Period (FY) 2007 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2009: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2008: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2007: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords腎移植 / 血中抗体 / プロテオーム解析 / プロテーオム解析
Research Abstract

The rejection is the most serious problem in renal transplantation, but there is no clear clinical marker to diagnose at an early stage. In this study, we developed the effective pretreatment method of urine followed by proteor is analysis using agarose two-dimensional electrophoresis. With this method, we detected eight rejection-associated proteins and identified them by LC-MS/MS analysis.

Report

(4 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (59 results)

All 2010 2009 2008 2007

All Journal Article (31 results) (of which Peer Reviewed: 26 results) Presentation (22 results) Book (3 results) Patent(Industrial Property Rights) (3 results)

  • [Journal Article] 尿のプロテオーム解析法開発から診断マーカー獲得に向けて2010

    • Author(s)
      小寺義男, 大草洋
    • Journal Title

      日本腎臓学会誌 (in press)

    • NAID

      10026409248

    • Related Report
      2009 Final Research Report
  • [Journal Article] Investigation of Molecular Proteins for Urothelial Carcinoma in the Urinary Bladder cancer2010

    • Author(s)
      Matsumoto K, Nishi M, Baba S.
    • Journal Title

      Etymology, Diagnosis, and Treatment(Editor by Nilsson WE Nova Science Publishers, Inc) (in press)

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] High-yield peptide-extraction method for the discovery of subnanomolar biomarkers from small serum samples.2010

    • Author(s)
      Kawashima Y, Fukutomi F, Kodera Y
    • Journal Title

      J. Proteome Research 9

      Pages: 1695-1705

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Proteomic study of sera from patients with bladder cancer-Usefulness of S100A8 and S100A9 proteins2010

    • Author(s)
      Minami S, Sato Y, Kodera Y, Okayasu I.
    • Journal Title

      Cancer Genomics Proteomics (in press)

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Application of Fourier-transform infrared (FT-IR) spectroscopy for simple and easy determination of chylomicron-triglyceride and very low density lipoprotein-triglyceride.2010

    • Author(s)
      Sato K, Seimiya M, Kodera Y, Kitamura A, Nomura F.
    • Journal Title

      Clin Chim Acta 411

      Pages: 285-290

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Prognostic role of lymphovascular invasion in patients with urothelial carcinoma of the upper urnary tract : an international validation study2010

    • Author(s)
      Novara G, Matsumoto K, Baba S, Shariat SF
    • Journal Title

      Eur Urol European Urology 57

      Pages: 1064-1071

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] High-yield peptide-extraction method for the discovery of subnanomolar biomarkers from small serum samples.2010

    • Author(s)
      Kawashima Y, Fukutomi F, Tomonaga T, Takahashi H, Nomura F, Maeda T, Kodera Y
    • Journal Title

      J.Proteome Research (in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Proteomic study of sera from patients with bladder cancer-Usefulness of S100A8 and S100A9 proteins2010

    • Author(s)
      Minami S, Sato Y, Matsumoto T, Kageyama T, Kawashima Y, Kodera Y, Ishii J, Matsumoto K, Nagashio R, Okayasu I
    • Journal Title

      Cancer Genomics Proteomics (in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The RNA recognition mechanism of human immunodeficiency virus (HIV) type 2 NCp8 is different from that of HIV-1 NCp-7.2009

    • Author(s)
      Matsui T, Tanaka T, Endoh H, Maeda T Kodera Y.
    • Journal Title

      Biochemistry 48

      Pages: 4311-4323

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] A simple and highly reproducible method for discovering potential disease markers in low abundance serum proteins.2009

    • Author(s)
      Kawashima Y, Fukuno T, Satoh M, Maeda T, Kodera Y.
    • Journal Title

      J Electrophoresis 57

      Pages: 13-18

    • NAID

      10025191974

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] YKL-40 identified by proteomic analysis as a biomarker of sepsis.2009

    • Author(s)
      Hattori N, Nomura F, Tomonasga T, Kodera Y, Hirasawa H.
    • Journal Title

      Shock 32

      Pages: 393-400

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] A search for novel markers of alcohol abuse using magnetic beads and MALDI-TOF/TOF Mass spectrometry.2009

    • Author(s)
      Sogawa K, Satoh M, Kodera Y, Nomura F.
    • Journal Title

      Proteomics Clin. Appl. 3

      Pages: 821-828

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] High expression of HSP47 in ulcerative colitis-associated carcinomas: proteomic approach2009

    • Author(s)
      K Araki, Y Sato, Y Kodera, T Maeda, I Okayasu
    • Journal Title

      British Journal of Cancer 101

      Pages: 492-497

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Proteomic analysis of anti-inflammatory effects of a Kampo (Japanese herbal) medicine‘shoseilyuto (xiao-qing-long-tang)' on airway inflammation in a mouse model.2009

    • Author(s)
      Nagai T, Kodera Y, Maeda T, Yamada H
    • Journal Title

      Evid, Based Complement. Alternat. Med.

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] 今後、腹膜透析においてEPSは起こらないか?2009

    • Author(s)
      吉田一成、若井陽希
    • Journal Title

      腎不全外科

      Pages: 23-26

    • Related Report
      2009 Final Research Report
  • [Journal Article] Genitourinary toxicity after high-dose-rate (HDR) brachytheraoy combined with hypofractionated external beam radiotherapy for localized prostate cancer: an analysis to determine the conelation between dose-volume histogram parameters in BDR brachytherapy and severity of toxicity.2009

    • Author(s)
      Ishiyama H, Okusa H, Tabata K, Baba S
    • Journal Title

      Int I Radiat Oncol Biol phys. 75

      Pages: 23-8

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Single infusion of zoledronic acid to prevent androgen deprivation therapy-induced bone loss in men with hormone-naive prostate carcinoma.2009

    • Author(s)
      Satoh T, Okmsa H, Baba S.
    • Journal Title

      Cancer 115

      Pages: 3468-74

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] 北里大学病院におけるMVAC耐性再発進行尿路上皮癌に対するgemcitabine/paclitaxelの有用性にっいての検討-第二報-2009

    • Author(s)
      松本和将、大草洋、吉田一成、馬場志郎
    • Journal Title

      北里医学 39

      Pages: 41-43

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] 血液透析患者の皮膚掻痒症に対するロラタジン(クラリチン錠)の有用性2009

    • Author(s)
      兵藤透、大草洋、吉田一成、馬場志郎
    • Journal Title

      Progress in Medicine 29

      Pages: 161-165

    • Related Report
      2009 Final Research Report
  • [Journal Article] 今後、腹膜透析においてEPSは起こらないか?2009

    • Author(s)
      吉田一成、若井陽希
    • Journal Title

      腎不全外科2009 66

      Pages: 23-26

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article]2009

    • Author(s)
      吉田一成
    • Journal Title

      腎移植のすべて(株式会社メジカルビュー社)

      Pages: 121-124

    • Related Report
      2009 Annual Research Report
  • [Journal Article] Seraching for new biomarkers of bladder cancer based on proteomic analysis.2008

    • Author(s)
      Okusa H., Kodera Y, Oh-ishi M., Minamida M., Tsuchida M., Kavoussi N., Matsumoto K., Sato T, Iwamura M., Maeda T., Baba S.
    • Journal Title

      J. Elecrophoresis 52

      Pages: 19-24

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Reoent advances in molecular markers for bladder cancer.2008

    • Author(s)
      Kazumasa Matsumoto, Hiroshi Okusa, Wataru Ishikawa, Kazuhito Matsushita, Tabata Kenichi, Takefumi Satoh, Masatsugu Iwamura, Shiro Baba.
    • Journal Title

      Res Adv in Urol 1

      Pages: 1-17

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Protein Carbonyl Detection by Two-Dimensional Fluorescence Difference Gel Electrophoresis2008

    • Author(s)
      Sawada A., Ueno T., Kawashima Y, Haruta-Satoh E., Oh-Ishi M., Kodera Y., Maeda T.
    • Journal Title

      J. Electrophoresis 52

      Pages: 1-17

    • NAID

      10024175202

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Disease proteomics of endocrine disorders revealed by two-dimensional gel electrophoresis and mass spectrometry.2008

    • Author(s)
      Oh-lshi M, Kodera Y, Furudate S, Maeda T
    • Journal Title

      Proteomics Clin Appl 2

      Pages: 327-337

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] 腎移植におけるミコフェノール酸モフェチルの血中濃度管理とその有用性2008

    • Author(s)
      小林昌宏, 吉田一成, 他
    • Journal Title

      今日の移植 21

      Pages: 651-653

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 第2部各論 7副腎・後腹膜の疾患P. 2272008

    • Author(s)
      吉田一成
    • Journal Title

      最新泌尿器科診療指針

      Pages: 227-227

    • Related Report
      2008 Annual Research Report
  • [Journal Article] Disease proteomics of endocrine disorders revealed by two-dimensional gel electrophoresis and mass spectrometry2008

    • Author(s)
      Oh-Ishi M, Kodera, et al
    • Journal Title

      Proteomics Clin Appl 2

      Pages: 327-337

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Detection of biomarkers for alcoholism by two-dimensional differential gel electrophoresis2007

    • Author(s)
      Oh-Ishi M, Kodera Y, Maeda T, et. al.
    • Journal Title

      Alcohol Clin Exp Res 31

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural role of the secondary active domain of HIV-2 NCp 8 in multi-functionality.2007

    • Author(s)
      Matsui T., Kodera Y., et. al.
    • Journal Title

      Biochem.Biophys.Res.Commun. 678

      Pages: 373-678

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RNA Recognition Mechanism of the Minimal Active Domain of the Human Immunodeficiency Virus Type-2 Nucleocapsid Protein.2007

    • Author(s)
      Matsui T., Kodera Y., et. al.
    • Journal Title

      J Biochem. 141

      Pages: 269-277

    • NAID

      10020101562

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] タクロリムス徐法製剤(TAC-ER)での腎移植免疫導入の経験(臨床結果とTDM)2009

    • Author(s)
      吉田一成
    • Organizer
      大阪腎移植病理組織研究会
    • Place of Presentation
      大阪
    • Year and Date
      2009-12-04
    • Related Report
      2009 Final Research Report
  • [Presentation] タクロリムス徐法製剤(TAC-ER)での腎移植免疫導入の経験(臨床結果とTDM)2009

    • Author(s)
      吉田一成
    • Organizer
      大阪腎移植病理組織研究会
    • Place of Presentation
      リーガロイヤルホテル(大阪)
    • Year and Date
      2009-12-04
    • Related Report
      2009 Annual Research Report
  • [Presentation] 小規模研究室でもできるプロテオーム解析のコツ, シンポジウム4S3pプロテオミクス秘伝の奥義一挙公開2009

    • Author(s)
      小寺義男
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-24
    • Related Report
      2009 Final Research Report
  • [Presentation] アガロース2-DE法と量子ドット技術を用いた翻訳後修飾のプロテオーム解析, シンポジウム4S3p「プロテオミクス秘伝の奥義一挙公開」2009

    • Author(s)
      大石正道
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-24
    • Related Report
      2009 Final Research Report
  • [Presentation] Molecular Mechanisms of the rdw/rdw Rats with Hereditary Dwarfism and Hypothyroidism.2009

    • Author(s)
      Oh-Ishi M, Kodera Y, Furudate S, Satoh M, Maeda T. Invited Lecture
    • Organizer
      2009 Korea Association of Laboratory Animal Science (KALAS)Annual Meeting
    • Place of Presentation
      韓国天安市
    • Year and Date
      2009-08-28
    • Related Report
      2009 Final Research Report
  • [Presentation] Disease Proteomics of High-Molecular-Mass Proteins by 2-DE with Agarose Gels in the First Dimension.2009

    • Author(s)
      Oh-Ishi M. Invited Lecture
    • Organizer
      Basic Science Institute(KBSI)Seminar
    • Place of Presentation
      韓国テジョン市
    • Year and Date
      2009-08-27
    • Related Report
      2009 Final Research Report
  • [Presentation] Disease Proteomics of High-Molecular-Mass Proteins by 2-DE with Agarose Gels in the First Dimension.2009

    • Author(s)
      0h-Ishi M. Invited Lecture
    • Organizer
      Yonsei Proteome Research Center Seminar
    • Place of Presentation
      韓国ソウル市
    • Year and Date
      2009-08-26
    • Related Report
      2009 Final Research Report
  • [Presentation] 血中診断マーカー確立に向けた包括的なアプローチ, シンポジウム「プロテオミクスの医学への応用(その2)マーカー探索(血液・尿)」2009

    • Author(s)
      止圭義塁
    • Organizer
      日本ヒトプロテオーム機構(JHUPO)第7回大会
    • Place of Presentation
      東京
    • Year and Date
      2009-07-28
    • Related Report
      2009 Final Research Report
  • [Presentation] プロテオミクスの手法による膀胱癌新規腫瘍マーカーの探索.2009

    • Author(s)
      大草洋、松本和将、服部学、南田諭、岩村正嗣、大橋和也、川島祐介、小寺義男、大石正道、前田忠計、馬場志郎
    • Organizer
      第17回北里腫瘍フォーラム
    • Place of Presentation
      模原
    • Year and Date
      2009-07-17
    • Related Report
      2009 Final Research Report
  • [Presentation] 質量分析計を用いた診断を目指して2009

    • Author(s)
      小寺義男
    • Organizer
      第11回次世代医療システム産業化フォーラム2008
    • Place of Presentation
      大阪商工会議所
    • Year and Date
      2009-02-19
    • Related Report
      2009 Final Research Report
  • [Presentation] Structual maintenance of chromsome 3の膀胱癌新規腫瘍マーカーとしての有用性の検討2009

    • Author(s)
      大草洋、松本和将、南田諭、馬場志郎、小寺義男、大石正道、前田忠
    • Organizer
      第18回泌尿器科分子・細胞研究会
    • Place of Presentation
      鹿児島
    • Year and Date
      2009-02-14
    • Related Report
      2009 Final Research Report
  • [Presentation] 腎移植でのMPA-TDMによるMMF Dose Control strategy2008

    • Author(s)
      吉田一成
    • Organizer
      MPA-PK/PD TDM Seminar
    • Place of Presentation
      東京
    • Year and Date
      2008-12-13
    • Related Report
      2008 Annual Research Report
  • [Presentation] アガロースニ次元電気泳動法により発現された新規膀胱腫瘍マーカー2008

    • Author(s)
      大草洋、松本和将、小寺義男、土田繭美、南田諭、大石正道、前田忠計、馬場志郎
    • Organizer
      第67回日本癌学会学術総会
    • Place of Presentation
      名古屋
    • Year and Date
      2008-10-29
    • Related Report
      2009 Final Research Report
  • [Presentation] プロテオミクスの手法による膀胱癌新規腫瘍マーカーの探索2008

    • Author(s)
      大草洋、松本和将、小寺義男、南田諭、土田繭美、大石正道、前田忠計馬場志郎
    • Organizer
      第73回日本泌尿器科学会東部総会
    • Place of Presentation
      東京
    • Year and Date
      2008-09-20
    • Related Report
      2009 Final Research Report
  • [Presentation] プロテオミクスの手法による膀胱癌新規腫瘍マーカーの探索2008

    • Author(s)
      大草洋、松本和将、小寺義男、土田繭美、南田諭、大石正道、前田忠計、馬場志郎.
    • Organizer
      第21回バイオサイエンスフォーラム研究会
    • Year and Date
      2008-08-01
    • Related Report
      2009 Final Research Report
  • [Presentation] 独自のペプチド分析法による大腸癌マーカーペプチドの探索と評価2008

    • Author(s)
      小寺義男, 川島祐介, 福冨俊之, 高橋広樹, 相野谷学, 丸橋正弘, 松井崇, 平賀啓介, 曽川一幸, 朝長毅, 野村文夫, 前田忠
    • Organizer
      日本ヒトプロテオーム機構(JHUPO)第6回大会
    • Place of Presentation
      大阪府茨木市
    • Year and Date
      2008-07-30
    • Related Report
      2009 Final Research Report
  • [Presentation] 体液を対象とした診断システムの開発2008

    • Author(s)
      小寺義男
    • Organizer
      第58回日本電気泳動学会シンポジウム
    • Place of Presentation
      東京都港区
    • Year and Date
      2008-06-13
    • Related Report
      2009 Final Research Report
  • [Presentation] Development of the basic strategy for the comparative analysis of serum proteomes and its application in thediscovery of hepatic injury biomarkers2008

    • Author(s)
      Kodera, Y., Maeda, T
    • Organizer
      17th Meeting of Methods in Protein Structure Analysis (MPSA2008)
    • Place of Presentation
      Sapporo
    • Related Report
      2009 Final Research Report
  • [Presentation] Development of novel serum peptidomic strategy and its application in the discovery of colon cancer tumor marker peptides2008

    • Author(s)
      Kodera Y, Maeda T.
    • Organizer
      PepTalk2008
    • Place of Presentation
      San-Diego
    • Related Report
      2009 Final Research Report
  • [Presentation] High molecular mass proteomics of human renal cell carcinoma by 2-DE using agarose gels for IEF (Agarose 2-DE) and HPLC/MS/MS HUPO 6th Annual World Congress2007

    • Author(s)
      Oh-Ishi M, Kodera Y, Baba S, Maeda T
    • Organizer
      第6回国際ヒトプロテオーム機構年会
    • Place of Presentation
      韓国, ソウル
    • Year and Date
      2007-10-09
    • Related Report
      2009 Final Research Report
  • [Presentation] Maeda T Urinary proteomics of high-molecular-mass proteins by 2-DE with agarose gels in the first dimension (Agarose 2-DE) and LC-MS/MS Human Kidney & Urine Proteome Project HUPO2007

    • Author(s)
      Okusa H, Kodera Y, Kondo R, Matsumoto K, Iwamura M, Oh-Ishi M, Baba S
    • Organizer
      6th Annual World Congress
    • Place of Presentation
      韓国, ソウル
    • Year and Date
      2007-10-06
    • Related Report
      2009 Final Research Report
  • [Presentation] 尿を対象としたプロテオミクスの最前線2007

    • Author(s)
      小寺義男
    • Organizer
      日本臨床検査自動化学会第39回大会
    • Place of Presentation
      横浜
    • Related Report
      2009 Final Research Report
  • [Book] 経尿道的手術の際のランダム生検腎・泌尿器癌-基礎・臨床研究のアップデート-II. 膀胱癌2010

    • Author(s)
      松本和将、馬場志郎
    • Related Report
      2009 Final Research Report
  • [Book] 腎移植の全て2009

    • Author(s)
      吉田一成
    • Publisher
      (珠)メジカルビュー社
    • Related Report
      2009 Final Research Report
  • [Book] 腎孟癌・尿管癌に対する内視鏡下手術開放手術併用腎細胞癌および上部尿路癌の手術2009

    • Author(s)
      松本和将、岩村正嗣、馬場志郎
    • Related Report
      2009 Final Research Report
  • [Patent(Industrial Property Rights)] 大腸癌マーカーペプチド、及び大腸癌の診断2008

    • Inventor(s)
      小寺義男、川島祐介、前田忠計、朝長毅、野村文夫
    • Industrial Property Rights Holder
      学校法人北里研究所
    • Filing Date
      2008-08-15
    • Related Report
      2009 Final Research Report
  • [Patent(Industrial Property Rights)] 体液試料における、低分子量タンパク質及びペプチドの濃縮方法2008

    • Inventor(s)
      小寺義男、川島裕介、前田忠
    • Industrial Property Rights Holder
      学校法人北里研究所
    • Filing Date
      2008-08-08
    • Related Report
      2009 Final Research Report
  • [Patent(Industrial Property Rights)] 膀胱癌の診断2008

    • Inventor(s)
      松本和将、大草洋、馬場志郎、小寺義男、前田忠
    • Industrial Property Rights Holder
      学校法人北里研究所
    • Industrial Property Number
      2008-066122
    • Filing Date
      2008-03-14
    • Related Report
      2009 Final Research Report

URL: 

Published: 2007-04-01   Modified: 2016-04-21  

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