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Development of E. coli translational system

Research Project

Project/Area Number 19H00936
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Review Section Medium-sized Section 38:Agricultural chemistry and related fields
Research InstitutionOsaka University (2022)
National Institute of Advanced Industrial Science and Technology (2019-2021)

Principal Investigator

Miyazaki Kentaro  大阪大学, 生物工学国際交流センター, 特任教授(常勤) (60344123)

Project Period (FY) 2019-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥44,980,000 (Direct Cost: ¥34,600,000、Indirect Cost: ¥10,380,000)
Fiscal Year 2022: ¥11,440,000 (Direct Cost: ¥8,800,000、Indirect Cost: ¥2,640,000)
Fiscal Year 2021: ¥11,440,000 (Direct Cost: ¥8,800,000、Indirect Cost: ¥2,640,000)
Fiscal Year 2020: ¥11,440,000 (Direct Cost: ¥8,800,000、Indirect Cost: ¥2,640,000)
Fiscal Year 2019: ¥10,660,000 (Direct Cost: ¥8,200,000、Indirect Cost: ¥2,460,000)
Keywordsリボソーム / ホーミングエンドヌクレアーゼ / イントロン / rRNA / Intron / 機能改変 / 低温適応 / 大腸菌 / ゲノム編集 / 23S rRNA / 宿主
Outline of Research at the Start

応募者は、大腸菌リボソームの可塑性を研究する過程で、生物種特異的であると思われてきたrRNAの生物種間互換性を発見した。また、機能互換なrRNAの中に、宿主の増殖速度を向上させる高性能rRNAが含まれることも発見した。また自ら単離した好熱菌 Rhodothermus marinusの23S rRNA遺伝子内に、ホーミングエンドヌクレアーゼを含むIntronを発見した。本研究では、環境より取得した高性能rRNAとIntronを組み合わせたゲノム上rRNA遺伝子の編集技術を統合し、大腸菌の翻訳機能を刷新する革新的宿主改変技術を開発する。

Outline of Final Research Achievements

To innovate the translational function of E. coli, heterologous 23S rRNA gene was PCR amplified from the environmental metagenomes. The amplicon was incorporated into an expression vector, and E. coli strains deficient in the 23S rRNA gene were screened by means of genetic complementation as, and mutants with faster growth rates were accumulated. The 23S rRNA gene sequence was inserted at a homologous site with an intron containing a homing endonuclease (HE) in the 23S rRNA gene of Rhodothermus marinus, which was discovered previously, but failed to replace the E. coli 23S rRNA genes in the genome.

Academic Significance and Societal Importance of the Research Achievements

バクテリアイントロンはほとんど報告がないが、本研究提案の基礎となる23S rRNA遺伝子中のホーミングエンドヌクレアーゼを含むイントロンの発見も極めてユニークであり、高い意義がある。大腸菌のもつ23S rRNAより高性能の23S rRNAのスクリーニングを行い、宿主の増殖を良化する遺伝子の獲得には成功し、大腸菌リボソームに改良の余地があることが示されたことは高い意義がある。

Report

(6 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Comments on the Screening Results   Annual Research Report
  • Research Products

    (30 results)

All 2023 2022 2021 2020 2019 Other

All Journal Article (20 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 18 results,  Open Access: 18 results) Presentation (6 results) (of which Invited: 4 results) Remarks (4 results)

  • [Journal Article] Genetic Perturbation Alters Functional Substates in Alkaline Phosphatase2023

    • Author(s)
      Sakuma Morito、Honda Shingo、Ueno Hiroshi、Tabata Kazuhito V.、Miyazaki Kentaro、Tokuriki Nobuhiko、Noji Hiroyuki
    • Journal Title

      Journal of the American Chemical Society

      Volume: 145 Issue: 5 Pages: 2806-2814

    • DOI

      10.1021/jacs.2c06693

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequences of Four Parageobacillus Strains Isolated from Soil in Japan2022

    • Author(s)
      Miyazaki Kentaro、Hosoya Kae
    • Journal Title

      Microbiology Resource Announcements

      Volume: 11 Issue: 6

    • DOI

      10.1128/mra.00204-22

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequences of Thermus Strains Isolated from Senami Hot Spring in Japan2022

    • Author(s)
      Miyazaki Kentaro
    • Journal Title

      Microbiology Resource Announcements

      Volume: 11 Issue: 7

    • DOI

      10.1128/mra.00354-22

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Resequencing of Thermus thermophilus Strain TMY by Hybrid Assembly of Long- and Short-Read Sequencing Technologies2021

    • Author(s)
      Miyazaki Kentaro、Tokito Natsuko
    • Journal Title

      Microbiology Resource Announcements

      Volume: 10 Issue: 46

    • DOI

      10.1128/mra.00979-21

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequences of Four Halophilic Thermus thermophilus Strains Isolated from Arima Hot Spring in Japan2021

    • Author(s)
      Miyazaki Kentaro、Tomariguchi Natsuki、Ueno Yuko
    • Journal Title

      Microbiology Resource Announcements

      Volume: 10 Issue: 40

    • DOI

      10.1128/mra.00874-21

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequences of Thermus thermophilus Strains HB5002 and HB5008, Isolated from Mine Hot Spring in Japan2021

    • Author(s)
      Miyazaki Kentaro、Moriya Toshiyuki、Tokito Natsuko、Oshima Tairo、Yura Kei、Bessho Yoshitaka
    • Journal Title

      Microbiology Resource Announcements

      Volume: 10 Issue: 16

    • DOI

      10.1128/mra.00272-21

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] リボソーム改変による好熱菌の低温適応進化2021

    • Author(s)
      宮崎健太郎
    • Journal Title

      アグリバイオ

      Volume: 5 Pages: 905-910

    • NAID

      40022700672

    • Related Report
      2021 Annual Research Report
  • [Journal Article] Complete Genome Sequence of Thermus thermophilus Strain HB5018, Isolated from Mine Hot Spring in Japan2021

    • Author(s)
      Miyazaki Kentaro、Moriya Toshiyuki、Nemoto Naoki、Oshima Tairo、Yura Kei、Bessho Yoshitaka
    • Journal Title

      Microbiology Resource Announcements

      Volume: 10 Issue: 10

    • DOI

      10.1128/mra.00039-21

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] リボソーム改変による好熱菌の低温適応進化2021

    • Author(s)
      宮崎 健太郎
    • Journal Title

      細胞

      Volume: 53-54 Pages: 44-48

    • NAID

      40022700672

    • Related Report
      2020 Annual Research Report
  • [Journal Article] Complete Genome Sequence of Geobacillus sp. Strain E55-1, Isolated from Mine Geyser in Japan2020

    • Author(s)
      Miyazaki Kentaro、Hase Erina、Tokito Natsuko
    • Journal Title

      Microbiology Resource Announcements

      Volume: 9 Issue: 20

    • DOI

      10.1128/mra.00339-20

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of Pseudomonas otitidis Strain MrB4, Isolated from Lake Biwa in Japan2020

    • Author(s)
      Miyazaki Kentaro、Hase Erina、Maruya Tomomasa
    • Journal Title

      Microbiology Resource Announcements

      Volume: 9 Issue: 16

    • DOI

      10.1128/mra.00148-20

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of Vibrio rotiferianus Strain AM72020

    • Author(s)
      Miyazaki Kentaro、Wiseschart Apirak、Pootanakit Kusol、Kitahara Kei
    • Journal Title

      Microbiology Resource Announcements

      Volume: 9 Issue: 21

    • DOI

      10.1128/mra.01591-19

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Complete Genome Sequence of Bacillus cereus Strain PL1, Isolated from Soil in Japan2020

    • Author(s)
      Miyazaki Kentaro、Hase Erina、Maruya Tomomasa
    • Journal Title

      Microbiology Resource Announcements

      Volume: 9 Issue: 12

    • DOI

      10.1128/mra.00195-20

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequences of Rhodothermus marinus Strains AA2-13 and AA3-38, Isolated from Arima Onsen Hot Spring in Japan2020

    • Author(s)
      Tomariguchi Natsuki、Miyazaki Kentaro
    • Journal Title

      Microbiology Resource Announcements

      Volume: 9 Issue: 2

    • DOI

      10.1128/mra.01475-19

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of Alteromonas sp. Strain I4, Isolated from the Japan Sea2019

    • Author(s)
      Miyazaki Kentaro、Izumi Kouki
    • Journal Title

      Microbiology Resource Announcements

      Volume: 8 Issue: 47

    • DOI

      10.1128/mra.01277-19

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of Staphylococcus arlettae Strain P2, Isolated from a Laboratory Environment2019

    • Author(s)
      Yu Hiroki、Taniguchi Makoto、Uesaka Kazuma、Wiseschart Apirak、Pootanakit Kusol、Nishitani Yudai、Murakami Yota、Ishimori Koichiro、Miyazaki Kentaro、Kitahara Kei
    • Journal Title

      Microbiology Resource Announcements

      Volume: 8 Issue: 45 Pages: 1-3

    • DOI

      10.1128/mra.00696-19

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Complete Genome Sequencing of Thermus thermophilus Strain HC11, Isolated from Mine Geyser in Japan2019

    • Author(s)
      Miyazaki Kentaro
    • Journal Title

      Microbiology Resource Announcements

      Volume: 8 Issue: 39

    • DOI

      10.1128/mra.00873-19

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of Rubrobacter xylanophilus Strain AA3-22, Isolated from Arima Onsen in Japan2019

    • Author(s)
      Tomariguchi Natsuki、Miyazaki Kentaro
    • Journal Title

      Microbiology Resource Announcements

      Volume: 8 Issue: 34

    • DOI

      10.1128/mra.00818-19

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and promiscuity of bacterial 16S rRNAs2019

    • Author(s)
      Miyazaki Kentaro、Tomariguchi Natsuki
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 11233-11233

    • DOI

      10.1038/s41598-019-47807-z

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequences of Thermus thermophilus Strains AA2-20 and AA2-29, Isolated from Arima Onsen in Japan2019

    • Author(s)
      Miyazaki Kentaro、Tomariguchi Natsuki
    • Journal Title

      Microbiology Resource Announcements

      Volume: 8 Issue: 31

    • DOI

      10.1128/mra.00820-19

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Genetic Interoperability and Promiscuity of Bacterial 16S rRNA: Proposal for a Random Patch Model2021

    • Author(s)
      宮崎健太郎
    • Organizer
      第22回 日本RNA学会年会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 16S rRNAは遺伝子組み換えにより進化する2020

    • Author(s)
      宮崎 健太郎、泊口菜月
    • Organizer
      極限環境生物学会 第21回年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Rubrobacter sp. AA3-22株の放射線と紫外線に対する耐性2020

    • Author(s)
      泉 洸輝、佐藤 勝也、大野 豊、宮崎 健太郎、鳴海 一成
    • Organizer
      QST高崎サイエンスフェスタ2020
    • Related Report
      2020 Annual Research Report
  • [Presentation] Directed evolution: irrational approach to molecular engineering2019

    • Author(s)
      宮崎 健太郎
    • Organizer
      日本育種学会 第61回シンポジウム
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 多様性工学 ~進化を利用したセンサー分子探索と高機能化~2019

    • Author(s)
      宮崎 健太郎
    • Organizer
      日本分析化学会第68年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 16SrRNAは遺伝子組み換えにより進化する -リボソーム進化のRandom Patch Modelの提唱-2019

    • Author(s)
      宮崎 健太郎
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Remarks] 生物プロセス研究部門 合成生物工学研究グループ

    • URL

      https://unit.aist.go.jp/bpri/bpri-synthe/index.html

    • Related Report
      2020 Annual Research Report
  • [Remarks] 東京大学大学院 新領域創成科学研究科 メディカル情報生命専攻 生命機能分子工学分野 宮崎研究室

    • URL

      https://staff.aist.go.jp/miyazaki-kentaro/group/

    • Related Report
      2020 Annual Research Report
  • [Remarks] 合成生物工学研究グループ

    • URL

      http://unit.aist.go.jp/bpri/bpri-synthe/index.html

    • Related Report
      2019 Annual Research Report
  • [Remarks] 研究室ホームページ

    • URL

      http://staff.aist.go.jp/miyazaki-kentaro/group/

    • Related Report
      2019 Annual Research Report

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Published: 2019-04-18   Modified: 2024-01-30  

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