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Construction of DUB MAP for innate immune and inflammatory responses

Research Project

Project/Area Number 19K22541
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Review Section Medium-sized Section 49:Pathology, infection/immunology, and related fields
Research InstitutionOsaka City University

Principal Investigator

Tokunaga Fuminori  大阪市立大学, 大学院医学研究科, 教授 (00212069)

Project Period (FY) 2019-06-28 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2020: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2019: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Keywords脱ユビキチン化酵素 / タンパク質 / 細胞 / 炎症 / 自然免疫 / オートファジー / 酵素 / シグナル伝達 / ユビキチン / 細胞死
Outline of Research at the Start

申請者らが独創的に構築したヒト脱ユビキチン化酵素(DUB) cDNAセットを用いて、gain-of-function法にて炎症や自然免疫に重要なシグナル伝達や選択的オートファジー制御に関わるDUBの定量的・網羅的探索に挑戦するとともに、酵素機能の生化学的解析、細胞・個体レベルでの生理機能解析、DUB阻害剤の同定を目指し、炎症・自然免疫を制御するDUBの相対位置付け(DUBマップ)を明らかにする。また、シグナル伝達経路・選択的オートファジーの研究試薬や癌・炎症性疾患に対する創薬シーズの開発を目指す。本研究から、基礎医学研究のみならず、癌や炎症性疾患に対する新規創薬標的の同定が期待される。

Outline of Final Research Achievements

Protein ubiquitination was identified as a marker that binds to proteins in cells and selectively leads to proteasomal degradation. The discoverers of protein ubiquitination is awarded to the Nobel Prize in Chemistry in 2004, due to the importance of cellular functions. Subsequent studies have shown that it is involved in various cell functions, such as inflammation and immune signals, selective autophagy, DNA repair, and proteolysis. There are about 100 types of deubiquitinating enzymes (DUBs) in humans that cleave ubiquitin chains and control various cell functions. In this study, we prepared 88 types of DUBs comprehensively investigated the characteristics of DUBs involved in inflammation / immune signals and selective autophagy, and proceeded with the DUB inhibitors.

Academic Significance and Societal Importance of the Research Achievements

ユビキチン修飾系の制御破綻は癌や神経変性疾患など各種疾患発症に関わるため、近年、脱ユビキチン化酵素(DUB)が創薬標的として高く注目されている。我々は独創的にDUBのライブラリーを調整し、各種細胞機能を制御するDUBの抽出を進め、特に炎症応答に関わる新規DUBを見出すことができた。また、細胞内侵入細菌が引き起こす選択的オートファジーとの関連、及び直鎖状ユビキチンを特異的に分解するDUBに対する阻害剤探索を行なった。これらの研究から新規細胞制御性DUBの発見と創薬シーズ展開が期待できる。

Report

(3 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • Research Products

    (36 results)

All 2021 2020 2019 Other

All Journal Article (17 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 17 results,  Open Access: 12 results) Presentation (18 results) (of which Int'l Joint Research: 2 results,  Invited: 6 results) Remarks (1 results)

  • [Journal Article] Th2 cell-derived histamine is involved in nasal Th2 infiltration in mice2021

    • Author(s)
      Iwasaki N, Terawaki S, Shimizu K, Oikawa D, Sakamoto H, Sunami K, Tokunaga F.
    • Journal Title

      Inflammation Research

      Volume: In press Issue: 5 Pages: 539-541

    • DOI

      10.1007/s00011-021-01458-x

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Th2 cells and macrophages cooperatively induce allergic inflammation through histamine signaling2021

    • Author(s)
      Iwasaki N, Terawaki S, Shimizu K, Oikawa D, Sakamoto H, Sunami K, Tokunaga F.
    • Journal Title

      Plos One

      Volume: - Issue: 3 Pages: e0248158-e0248158

    • DOI

      10.1371/journal.pone.0248158

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crosstalk Between NDP52 and LUBAC in Innate Immune Responses, Cell Death, and Xenophagy.2021

    • Author(s)
      Miyashita H, Oikawa D, Terawaki S, Kabata D, Shintani A, Tokunaga F.
    • Journal Title

      Frontiers in Immunology

      Volume: 12 Pages: 635475-635475

    • DOI

      10.3389/fimmu.2021.635475

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 6His-tagged Recombinant Human Cytoglobin Deactivates Hepatic Stellate Cells and Inhibits Liver Fibrosis by Scavenging Reactive Oxygen Species2021

    • Author(s)
      Ninh Quoc Dat, Le Thi Thanh Thuy, Vu Ngoc Hieu, Fuminori Tokunaga, Massimo Pinzani, and Norifumi Kawada
    • Journal Title

      Hepatology

      Volume: 0-0 Issue: 6 Pages: 0-0

    • DOI

      10.1002/hep.31752

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] MIND bomb 2 prevents RIPK1 kinase activity-dependent and -independent apoptosis through ubiquitylation of cFLIPL2021

    • Author(s)
      Nakabayashi Osamu、Takahashi Hirotaka、Moriwaki Kenta、Komazawa-Sakon Sachiko、Ohtake Fumiaki、Murai Shin、Tsuchiya Yuichi、Koyahara Yuki、Saeki Yasushi、Yoshida Yukiko、Yamazaki Soh、Tokunaga Fuminori、Sawasaki Tatsuya、Nakano Hiroyasu
    • Journal Title

      Communications Biology

      Volume: 4 Issue: 1 Pages: 80-80

    • DOI

      10.1038/s42003-020-01603-y

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The synchronized gene expression of retrotransposons and type I interferon in dermatomyositis.2021

    • Author(s)
      Kuriyama Y, Shimizu A, Kanai S, Oikawa D, Tokunaga F, Tsukagoshi H, Ishikawa O.
    • Journal Title

      Journal of American Academy of Dermatology

      Volume: 84 Issue: 4 Pages: 1103-1105

    • DOI

      10.1016/j.jaad.2020.05.051

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Involvement of linear ubiquitination in neurodegenerative diseases and development of LUBAC inhibitors2020

    • Author(s)
      及川 大輔、伊東 秀文、徳永 文稔
    • Journal Title

      生化学

      Volume: 92 Issue: 1 Pages: 28-34

    • DOI

      10.14952/SEIKAGAKU.2020.920028

    • ISSN
      0037-1017
    • Year and Date
      2020-02-25
    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Development and application of a protein array of human deubiquitinating enzyme2020

    • Author(s)
      高橋宏隆、山中聡士、徳永文稔、澤崎達也
    • Journal Title

      生化学

      Volume: 92 Issue: 1 Pages: 64-74

    • DOI

      10.14952/SEIKAGAKU.2020.920064

    • ISSN
      0037-1017
    • Year and Date
      2020-02-25
    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Cellular and Mathematical Analyses of LUBAC Involvement in T Cell Receptor-Mediated NF-κB Activation Pathway2020

    • Author(s)
      D.Oikawa, N.Hatanaka, T.Suzuki, F.Tokunaga
    • Journal Title

      Frontiers in Immunology

      Volume: 11 Pages: 601926-601926

    • DOI

      10.3389/fimmu.2020.601926

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Human DUB Protein Array for Clarification of Linkage Specificity of Polyubiquitin Chain and Application to Evaluation of Its Inhibitors2020

    • Author(s)
      Takahashi Hirotaka、Yamanaka Satoshi、Kuwada Shohei、Higaki Kana、Kido Kohki、Sato Yusuke、Fukai Shuya、Tokunaga Fuminori、Sawasaki Tatsuya
    • Journal Title

      Biomedicines

      Volume: 8 Issue: 6 Pages: 152-152

    • DOI

      10.3390/biomedicines8060152

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Linear ubiquitin code: Its writer, erasers, decoders, inhibitors, and implications in disorders.2020

    • Author(s)
      Oikawa D, Sato Y, Ito H, and Tokunaga F.
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 21 Issue: 9 Pages: 3381-3381

    • DOI

      10.3390/ijms21093381

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular bases for HOIPINs-mediated inhibition of LUBAC and innate immune responses.2020

    • Author(s)
      Oikawa D, Sato Y, Ohtake F, Komakura K, Hanada K, Sugawara K, Terawaki S, Mizukami Y, Phuong HT, Iio K, Obika S, Fukushi M, Irie T, Tsuruta D, Sakamoto S, Tanaka K, Saeki Y, Fukai S, Tokunaga F.
    • Journal Title

      Commun. Biol.

      Volume: 3 Issue: 1 Pages: 163-163

    • DOI

      10.1038/s42003-020-0882-8

    • Related Report
      2020 Annual Research Report 2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Subquinocin, a small molecule inhibitor of CYLD and USP-family deubiquitinating enzymes, promotes NF-κB signaling2020

    • Author(s)
      Yamanaka Satoshi、Sato Yusuke、Oikawa Daisuke、Goto Eiji、Fukai Shuya、Tokunaga Fuminori、Takahashi Hirotaka、Sawasaki Tatsuya
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 524 Issue: 1 Pages: 1-7

    • DOI

      10.1016/j.bbrc.2019.12.049

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 創薬を見据えた直鎖状ユビキチン鎖生成酵素(LUBAC)阻害剤開発2020

    • Author(s)
      徳永 文稔
    • Journal Title

      Farumashia

      Volume: 56 Issue: 1 Pages: 26-30

    • DOI

      10.14894/faruawpsj.56.1_26

    • NAID

      130007779035

    • ISSN
      0014-8601, 2189-7026
    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Linear Polyubiquitin Chain Modification of TDP-43-Positive Neuronal Cytoplasmic Inclusions in Amyotrophic Lateral Sclerosis2019

    • Author(s)
      Nakayama Yoshiaki、Tsuji Kazumi、Ayaki Takashi、Mori Megumi、Tokunaga Fuminori、Ito Hidefumi
    • Journal Title

      Journal of Neuropathology & Experimental Neurology

      Volume: 79 Issue: 3 Pages: 256-265

    • DOI

      10.1093/jnen/nlz135

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] The E3 ubiquitin ligase MIB2 enhances inflammation by degrading the deubiquitinating enzyme CYLD2019

    • Author(s)
      Uematsu Atsushi、Kido Kohki、Takahashi Hirotaka、Takahashi Chikako、Yanagihara Yuta、Saeki Noritaka、Yoshida Shuhei、Maekawa Masashi、Honda Mamoru、Kai Tsutomu、Shimizu Kouhei、Higashiyama Shigeki、Imai Yuuki、Tokunaga Fuminori、Sawasaki Tatsuya
    • Journal Title

      Journal of Biological Chemistry

      Volume: 294 Issue: 38 Pages: 14135-14148

    • DOI

      10.1074/jbc.ra119.010119

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of linear polyubiquitin chain immunoreactivity in tau pathology of Alzheimer’s disease2019

    • Author(s)
      Nakayama Yoshiaki、Sakamoto Shinji、Tsuji Kazumi、Ayaki Takashi、Tokunaga Fuminori、Ito Hidefumi
    • Journal Title

      Neuroscience Letters

      Volume: 703 Pages: 53-57

    • DOI

      10.1016/j.neulet.2019.03.017

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Presentation] 大阪市立大学医学部1年生に対する臨床遺伝教育の試み2020

    • Author(s)
      馬場遥香, 浄弘裕紀子, 堀田純子, 徳永文稔, 瀬戸俊之
    • Organizer
      第44回日本遺伝カウンセリング学会学術集会
    • Related Report
      2020 Annual Research Report
  • [Presentation] NDP52のユビキチン結合性を介した炎症応答・細胞死制御とLUBAC阻害剤の影響2020

    • Author(s)
      宮下裕久, 及川大輔, 寺脇正剛, 徳永文稔
    • Organizer
      第93回日本生化学会大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 非定型型直鎖状ユビキチン鎖を足場とするNF-κB活性化の細胞機能と数理モデル2020

    • Author(s)
      徳永文稔, 及川大輔, 畑中尚也, 鈴木貴
    • Organizer
      第93回日本生化学会大会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] ヒトDUBアレイ技術を用いたUSP特異的阻害剤の開発2020

    • Author(s)
      高橋宏隆, 山中聡士, 桑田翔平, 檜垣佳奈, 佐藤裕介, 深井周也, 徳永文稔, 澤崎達也
    • Organizer
      第93回日本生化学会大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] HOIPINsによるLUBAC活性抑制と自然免疫応答制御の分子基盤2020

    • Author(s)
      及川大輔, 徳永文稔
    • Organizer
      第93回日本生化学会大会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] cFLIPのユビキチン化による新たなアポトーシス抑制機構の解析2020

    • Author(s)
      中林修, 高橋宏隆, 村井晋, 大竹史明, 駒澤幸子, 土屋勇一, 佐伯泰, 吉田雪子, 山崎創, 徳永文稔, 森脇健太, 澤崎達也, 中野裕康
    • Organizer
      第93回日本生化学会大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Mathematical Model of Linear Ubiquitination-mediated NF-κB Activation Pathway2020

    • Author(s)
      Tokunaga F, Oikawa D, Hatanaka N, Suzuki T
    • Organizer
      JSPS Core-to-Core Program “Establishing International Research Network of Mathematical Oncology”
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] コムギ無細胞系を用いた直鎖状ユビキチン鎖の新規デコーダー分子の網羅的探索と機能解析2020

    • Author(s)
      高橋宏隆, 長尾和哉, 岩崎誠, 佐藤裕介, 及川大輔, 徳永文稔, 澤崎達也
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 非定型型直鎖状ユビキチン鎖を足場とした炎症シグナル発信とプロテイノパチー2020

    • Author(s)
      徳永文稔, 伊東秀文, 及川大輔
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] LRBA DUF1088ドメインの自然免疫制御における重要性2019

    • Author(s)
      及川大輔、駒倉啓大、福士雅也、入江崇、堀居拓郎、畑田出穂、阪口剛正、徳永文稔
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] 直鎖状ポリユビキチン鎖結合タンパク質ZnUBPファミリーのNF-κB抑制機構の解明2019

    • Author(s)
      高橋宏隆、及川大輔、長尾和哉、岩崎誠、今井祐記、徳永文稔、澤崎達也
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] 脱ユビキチン化酵素OTUD1によるNF-κB経路とインターフェロン産生経路の相反的制御2019

    • Author(s)
      駒倉啓大、及川大輔、徳永文稔
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] 直鎖状ユビキチン鎖生成を介した炎症シグナル発信と疾患・創薬2019

    • Author(s)
      徳永文稔
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Hsp72によるがん細胞遊走制御2019

    • Author(s)
      塩田正之、田中昌子、鰐渕英機、徳永文稔
    • Organizer
      第14回日本臨床ストレス応答学会
    • Related Report
      2019 Research-status Report
  • [Presentation] LUBACによるT細胞受容体シグナル制御に関する細胞・生化学及び数理モデル解析2019

    • Author(s)
      及川大輔、畑中尚也、鈴木貴、徳永文稔
    • Organizer
      第14回日本臨床ストレス応答学会
    • Related Report
      2019 Research-status Report
  • [Presentation] Stress Signaling Modules: ストレスの受容と細胞応答の選択性 LUBACシグナルソームによる自然免疫応答の選択的制御2019

    • Author(s)
      及川 大輔, 駒倉 啓大, 阿部 貴則, 飯尾 清誠, 小比賀 真吾, 勝矢 健, 花田 和希, 坂本 信二, 徳永 文稔
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 自然免疫制御に関わる新規脱ユビキチン化酵素OTUD1の同定と生理機能解析2019

    • Author(s)
      駒倉啓大、徳永文稔
    • Organizer
      第24回日本病態プロテアーゼ学会学術集会
    • Related Report
      2019 Research-status Report
  • [Presentation] Screening and characterization of novel LUBAC inhibitors, HOIPINs2019

    • Author(s)
      Oikawa, D., Katsuya, K., Hanada, K., Sugawara, K., Tsuruta, D., Sakamoto, S., Tokunaga, F.
    • Organizer
      Cold Spring Harbor Laboratory Meeting on Ubiquitin, Autophagy & Disease
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Remarks] 大阪市立大学大学院医学研究科分子病態学

    • URL

      http://osaka-cu-1seika.umin.jp

    • Related Report
      2020 Annual Research Report 2019 Research-status Report

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Published: 2019-07-04   Modified: 2022-01-27  

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