• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Mechanism of transcription coupled to RNA processing and its defect

Research Project

Project/Area Number 19K24692
Research Category

Fund for the Promotion of Joint International Research (Home-Returning Researcher Development Research)

Allocation TypeMulti-year Fund
Review Section Biological Sciences
Research InstitutionKyushu University

Principal Investigator

Nojima Takayuki  九州大学, 生体防御医学研究所, 准教授 (80431956)

Project Period (FY) 2021-03-12 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥55,770,000 (Direct Cost: ¥42,900,000、Indirect Cost: ¥12,870,000)
Keywords新生RNA / 転写終結 / RNA polymerase II / RNAプロセシング / クロマチン / RNA プロセシング / ゲノム転写 / エピジェネティクス / 非コードRNA / RNAポリメラーゼII
Outline of Final Research Achievements

This research aimed to understand a gene transcription and its coupled RNA processing, which are important regulatory steps in eukaryotic gene expression, and to develop necessary analytical methods and gain medical insights. Firstly, we successfully established the POINT method, which allows analysis of newly transcribed RNA. My POINT method reveals precise transcription start sites, RNA cleavage sites, and kinetics of co-transcriptional splicing. We also demonstrates the importance of alternative splicing during developmental stages. Additionally, the mechanisms of transcription termination defect in colorectal cancer and kidney cancer are revealed. The findings of this research contribute to the advancement of basic biology and also the development of treatment methods for diseases such as cancer.

Academic Significance and Societal Importance of the Research Achievements

本研究成果は、生命の根幹をなす遺伝子発現制御の理解に大きく貢献するものである。今回開発したPOINT法は、転写解析法として簡便で得られる情報量が多いため、現在世界中で広く使われている。本研究において、POINT法はがんで破綻している転写終結反応を検出し、その破綻ががん細胞の増殖に影響していることを明らかにした。このことは、転写終結反応が抗がん剤開発の標的となりうることを示している。本研究の成果は、がんのみならずウイルス感染や神経疾患などの病気に関わる遺伝子発現を正確に解析することを通して、今後医学的な発展に貢献する可能性がある。

Report

(4 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • Research Products

    (32 results)

All 2024 2023 2022 2021 Other

All Int'l Joint Research (10 results) Journal Article (7 results) (of which Int'l Joint Research: 7 results,  Open Access: 7 results,  Peer Reviewed: 4 results) Presentation (13 results) (of which Int'l Joint Research: 1 results,  Invited: 12 results) Remarks (2 results)

  • [Int'l Joint Research] University of Leicester(英国)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] Northwestern University(米国)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] Adam Mickiewicz University(ポーランド)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] University of Oxford/King's College of London(英国)

    • Related Report
      2022 Research-status Report
  • [Int'l Joint Research] Adam Mickiewicz University(ポーランド)

    • Related Report
      2022 Research-status Report
  • [Int'l Joint Research] North Western University(米国)

    • Related Report
      2022 Research-status Report
  • [Int'l Joint Research] University of Oxford/King’s College London(英国)

    • Related Report
      2021 Research-status Report
  • [Int'l Joint Research] Adam Mickiewicz University(ポーランド)

    • Related Report
      2021 Research-status Report
  • [Int'l Joint Research] University of Porto/University of Lisbon(ポルトガル)

    • Related Report
      2021 Research-status Report
  • [Int'l Joint Research] IIT(イタリア)

    • Related Report
      2021 Research-status Report
  • [Journal Article] NELF coordinates Pol II transcription termination and DNA replication initiation2024

    • Author(s)
      Nakayama Chihiro、Daigaku Yasukazu、Aoi Yuki、Fang Qi、Kimura Hiroshi、Shilatifard Ali、Tellier Michael、Nojima Takayuki
    • Journal Title

      BioRxiv

      Volume: NA

    • DOI

      10.1101/2024.01.31.578294

    • Related Report
      2023 Annual Research Report
    • Open Access / Int'l Joint Research
  • [Journal Article] PTBP1-activated co-transcriptional splicing controls epigenetic status of pluripotent stem cells2023

    • Author(s)
      Iannone Camilla、Kainov Yaroslav、Zhuravskaya Anna、Hamid Fursham、Nojima Takayuki、Makeyev Eugene V.
    • Journal Title

      Molecular Cell

      Volume: 83 Issue: 2 Pages: 203-218.e9

    • DOI

      10.1016/j.molcel.2022.12.014

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] <scp>CDK9</scp> and <scp>PP2A</scp> regulate <scp>RNA</scp> polymerase <scp>II</scp> transcription termination and coupled <scp>RNA</scp> maturation2022

    • Author(s)
      Tellier Michael、Zaborowska Justyna、Neve Jonathan、Nojima Takayuki、Hester Svenja、Fournier Marjorie、Furger Andre、Murphy Shona
    • Journal Title

      EMBO reports

      Volume: 23 Issue: 10 Pages: 1-22

    • DOI

      10.15252/embr.202154520

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mechanism of lncRNA biogenesis as revealed by nascent transcriptomics2022

    • Author(s)
      Nojima T and Proudfoot NJ
    • Journal Title

      Nature Reviews Molecular Cell Biology

      Volume: - Issue: 6 Pages: 1-18

    • DOI

      10.1038/s41580-021-00447-6

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Ptbp1-Activateded Co-Transcriptional Splicing Controls Epigenetic Status of Pluripotent Stem Cells2022

    • Author(s)
      Iannone C, Yaroslav K, Anna Z , Fursham H, Nojima T and Makeyev EV
    • Journal Title

      Cell Press Sneak Peek, preprint

      Volume: -

    • DOI

      10.2139/ssrn.4058691

    • Related Report
      2021 Research-status Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Simultaneous studies of gene expression and alternative polyadenylation in primary human immune cells2021

    • Author(s)
      Wilton J, Tellier M, Nojima T, Costa AM, Oliveira MJ, and Moreira A
    • Journal Title

      Methods in Enzymology

      Volume: 655 Pages: 349-399

    • DOI

      10.1016/bs.mie.2021.04.004

    • ISBN
      9780128235737
    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] CDK9 and PPA2 regulate the link between RNA polymerase II transcription termination and RNA maturation2021

    • Author(s)
      1.Tellier M, Zaborowska J, Neve J, Nojima T, Hester S, Furger A, and Murphy S
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2021.06.21.449289

    • Related Report
      2021 Research-status Report
    • Open Access / Int'l Joint Research
  • [Presentation] Ending RNA messages in cancer cells2024

    • Author(s)
      野島孝之
    • Organizer
      公益財団法人がん研究会 がん研セミナー
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] 出来立てのRNAを調べてわかるゲノム作動2024

    • Author(s)
      野島孝之
    • Organizer
      慶應薬学サイヤンスセミナー
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] 転写終結による RNA転写とDNA複製の棲み分け2023

    • Author(s)
      野島孝之
    • Organizer
      日本分子生物学会
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] Catch RNA polymerase II in transcription cycle2023

    • Author(s)
      野島孝之
    • Organizer
      第35回 Tokyo RNA Club
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] リードスルーRNA転写による 細胞周期の停止2023

    • Author(s)
      野島孝之
    • Organizer
      日本生化学会
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] 新生 RNA 解析から理解する ゲノム転写サイクル制御2023

    • Author(s)
      野島孝之
    • Organizer
      第6回サテライトシンポジウム」―RNA が制御する多様な生命機能―
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] NELF restricts deleterious readthrough RNAs in replicating cells2023

    • Author(s)
      野島孝之
    • Organizer
      日本RNA学会
    • Related Report
      2023 Annual Research Report
  • [Presentation] 新生RNAエンド2022

    • Author(s)
      野島孝之
    • Organizer
      RNAフロンティアミーティング2022
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] 新生RNA解析で理解するゲノム作動2022

    • Author(s)
      野島孝之
    • Organizer
      国立遺伝学研究所研究会 染色体安定維持研究会
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] Transcription termination: Forgotten mechanism in RNA synthesis cycle2022

    • Author(s)
      野島孝之
    • Organizer
      熊本大学リエゾンラボ/HIGO最先端研究セミナー
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] POINting toward transcription termination2022

    • Author(s)
      Takayuki Nojima
    • Organizer
      Hot spring harbour symposium、クロマチン潜在能 合同国際シンポジウム
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Mechanism of Co-transcriptional RNA splicing2021

    • Author(s)
      Takayuki Nojima
    • Organizer
      生命科学ネットワークシンポジウム
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] End of RNA synthesis2021

    • Author(s)
      Takayuki Nojima
    • Organizer
      第94回 日本生化学会 ジェットラグシンポジウム
    • Related Report
      2021 Research-status Report
    • Invited
  • [Remarks] 九州大学生体防御医学研究所腫瘍防御学分野 野島研究室

    • URL

      https://pol2-nascentrna.net/

    • Related Report
      2023 Annual Research Report
  • [Remarks] 野島研究室website

    • URL

      https://pol2-nascentrna.net/

    • Related Report
      2022 Research-status Report

URL: 

Published: 2020-03-25   Modified: 2025-01-30  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi