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Regulation of fate-determination of RNA and role of transcriptional machinery in heterochromatin formatin

Research Project

Project/Area Number 20052013
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionKyoto University

Principal Investigator

MURAKAMI Yota  Kyoto University, 大学院・先端生命科学研究院, 教授 (20260622)

Co-Investigator(Kenkyū-buntansha) 山口 雄輝  東京工業大学, 生命理工学部, 助教授 (50345360)
Project Period (FY) 2008 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥28,000,000 (Direct Cost: ¥28,000,000)
Fiscal Year 2009: ¥14,000,000 (Direct Cost: ¥14,000,000)
Fiscal Year 2008: ¥14,000,000 (Direct Cost: ¥14,000,000)
Keywords転写 / RNAポリメラーゼII / クロマチン / RNAプロセシング / 転写伸長 / ヘテロクロマチン / RNA / RNAポリメラーゼ
Research Abstract

mRNA and non-coding RNA, both of which are transcribed by RNA polymerase II, have different fate with different RNA processing processes. We analyzed the mechanism for the fate-determination mechanism and found that transcriptional elongation factors were involved in fate-determination process of heterochromatic ncRNA in fission yeast. We also found that fission yeast heterochromatin ncRNA formed DNA:RNA hybrid to remain on chromatin and plays a role in heterochromatin formation. In addition, we revealed the mechanism to regulate elongation of transcription by transcriptional elongation factors.

Report

(3 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • Research Products

    (48 results)

All 2010 2009 2008

All Journal Article (25 results) (of which Peer Reviewed: 24 results) Presentation (23 results)

  • [Journal Article] Dynamic regulation of heterochromatin via phosphorylation of HP1-family proteins.2010

    • Author(s)
      Shimada A., Murakami Y.
    • Journal Title

      Epigenetics 5

      Pages: 30-33

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Dynamic regulation of heterochromatin via phosphorylation of HP1-family proteins2010

    • Author(s)
      Shimada, et al.
    • Journal Title

      Epigenetics 5

      Pages: 30-33

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of a primary target of thalidomide teratogenicity2010

    • Author(s)
      Ito, et al.
    • Journal Title

      Science 327

      Pages: 1345-1350

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of N-end rule ubiquitin ligases UBR1 and UBR2 in regulating the leucine-mTOR signaling pathway2010

    • Author(s)
      Kume, et al.
    • Journal Title

      Genes Cells 15

      Pages: 339-349

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] the Paf1 complex, and Tat-SF1 have non-redundant, cooperative roles in RNA polymerase II elongation.2009

    • Author(s)
      Chen Y., Yamaguchi Y., Tsugeno Y, Yamamoto J., Yamada T, Nakamura M, Hisatake K., Handa H. DSIF
    • Journal Title

      Genes & Dev. 23

      Pages: 2765-77

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] ole of N-end rule ubiquitin ligases UBR1 and UBR2 in regulating the leucine-mTOR signaling pathway.2009

    • Author(s)
      Kume K., Iizumi Y., Shimada M., Ito Y., Kishi T., Yamaguchi Y., Handa H.
    • Journal Title

      Genes Cells 15

      Pages: 339-49

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phosphorylation of Swi6/HP1 regulates transcriptional gene silencing at heterochromatin.2009

    • Author(s)
      Shimada A., Dohke K., Sadaie M., Shinmyozu, K., Nakayama, J-I., Urano, T., Murakami, Y.
    • Journal Title

      Genes & Dev. 23

      Pages: 18-23

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cellular dynamics of the negative transcription elongation factor NELF.2009

    • Author(s)
      Yung T., Narita T., Komori T., Yamaguchi Y., Handa H.
    • Journal Title

      Exp. Cell. Res. 315

      Pages: 1693-705

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The role of human transcription elongation factor DSIF in the suppression of senescence and apoptosis.2009

    • Author(s)
      Komori T., Inukai N., Yamada T., Yamaguchi Y., Handa H.
    • Journal Title

      Genes Cells 14

      Pages: 343-45

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Repression of RNA Polymerase II elongation in vivo is critically dependent on the C-terminus of Spt52009

    • Author(s)
      Chen, et al.
    • Journal Title

      PLoS ONE 4

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DSIF, the Paf1 complex, and Tat-SF1 have non-redundant, cooperative roles in RNA polymerase II elongation2009

    • Author(s)
      Chen, et al.
    • Journal Title

      Genes Dev. 23

      Pages: 2765-2777

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of dynamin-2-mediated endocytosis as a new target of osteoporosis drugs, bisphosphonates2009

    • Author(s)
      Masaike, et al.
    • Journal Title

      Mol.Pharmacol. 77

      Pages: 262-269

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The role of human transcription-elongation factor DSIF in the suppression of senescence and apoptosis2009

    • Author(s)
      Kemori et.al.
    • Journal Title

      Genes Cells 14

      Pages: 343-354

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development and application of high-performance affinity beads : toward chemical biology and drug discovery (review)2009

    • Author(s)
      Sakamoto et.al.
    • Journal Title

      Chem Rec. 9

      Pages: 66-85

    • Related Report
      2008 Annual Research Report
  • [Journal Article] Mono-(2-ethylhexyl) phthalate targets glycogen debranching enzyme and affects glycogen metabolism in, rat testis2009

    • Author(s)
      Kuramoti et.al.
    • Journal Title

      Toxicol. Sci.

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cellular dynamics of the negative transcription elongation factor NELF2009

    • Author(s)
      Yung et.al.
    • Journal Title

      Exp, Cell Res.

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phosphorylation of Swi6/HP1 regulates transcriptional gene silencing at heterochromatin2009

    • Author(s)
      Shimada et.al.
    • Journal Title

      Genes & Dev. 23

      Pages: 18-23

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A new APE1/Ref-1-dependent pathway leading to reduction of NF-kB and AP-1, and activation of their DNA-binding activity.2008

    • Author(s)
      Ando K. Hirao S., Kabe Y., Ogura Y. Sato I., Yamaguchi Y., Handa H.
    • Journal Title

      Nucleic Acids Res. 36

      Pages: 4327-36

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fission yeast chromatin assembly factor 1 assists in the replication-coupled maintenance of heterochromatin.2008

    • Author(s)
      Dohke K., S. Miyazaki, Tanaka, K., Urano, T., Grewal, S., Murakami, Y.
    • Journal Title

      Genes to Cells 13

      Pages: 1027-43

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Schizosaccharomyces pombe Orc5 plays multiple roles in the maintenance of genome stability throughout the cell cycle.2008

    • Author(s)
      Kato H., Matsunaga, F., Miyazaki S., Yin, L., D'Urso, G, Tanaka, K., Murakami, Y.
    • Journal Title

      Cell Cycle 7

      Pages: 1083-1094

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Schizosaccharomyces pembe Orc5 plays multiple roles in the maintenance of genome stability throughout the cell cycle2008

    • Author(s)
      Kato et.al.
    • Journal Title

      Cell Cycle 7

      Pages: 1083-1094

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fission yeast chromatin assembly factor 1 assists in the replication-coupled maintenance of heterochromatin2008

    • Author(s)
      Dohke et.al.
    • Journal Title

      Genes to Cells 13

      Pages: 1027-1043

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A new APE1/Ref-1-dependent pathway leading to reduction of NF-kB and AP-1, and activation of their DNA-binding activity2008

    • Author(s)
      Ando et.al.
    • Journal Title

      Nucleic Acids Res. 36

      Pages: 4327-4336

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Presentation of functional foreign peptides on the slirface of SV40 virus-like narticles2008

    • Author(s)
      Takahashi et.al.
    • Journal Title

      J. Biotechnol. 135

      Pages: 385-392

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Adenine nucleotide tranlocator transports haemprecursors into mitochondria2008

    • Author(s)
      Azuma et.al.
    • Journal Title

      PLoS ONE 3

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] Potential role of transcription elongation factors and elongation control in differentiation and maintenance of ES cells.2010

    • Author(s)
      Yamaguchi Y.
    • Organizer
      Japan-Israel Workshop on Stem Cells
    • Place of Presentation
      Jerusalem, Israel
    • Year and Date
      2010-02-25
    • Related Report
      2009 Final Research Report
  • [Presentation] Potential role of transcription elongation factors and elongation control in differentiation and maintenance of ES cells2010

    • Author(s)
      Yuki Yamaguchi
    • Organizer
      Japan-Israel Workshop on Stem Cells
    • Place of Presentation
      Jerusalem, Israel
    • Year and Date
      2010-02-25
    • Related Report
      2009 Annual Research Report
  • [Presentation] Mechanism of phosphorylation-dependent elongation activation by DSIF.2009

    • Author(s)
      Yamaguchi Y
    • Organizer
      EMBO Workshop on Messenger RNA 3' Ends & Gene Expression
    • Place of Presentation
      Oxford, UK
    • Year and Date
      2009-09-18
    • Related Report
      2009 Final Research Report
  • [Presentation] Mechanism of phosphorylation-dependent elongation activation by DSIF2009

    • Author(s)
      Yuki Yamaguchi
    • Organizer
      EMBO Workshop on Messenger RNA 3' Ends & Gene Expression
    • Place of Presentation
      Oxford, UK
    • Year and Date
      2009-09-18
    • Related Report
      2009 Annual Research Report
  • [Presentation] DSIF, the Paf1 complex, and Tat-SF1 have non-redundant, cooperative roles in RNA polymerase II elongation.2009

    • Author(s)
      Yamaguchi Y.
    • Organizer
      CSHL Meeting on Mechanisms of Eukaryotic Transcription
    • Place of Presentation
      New York, USA
    • Year and Date
      2009-08-27
    • Related Report
      2009 Final Research Report
  • [Presentation] DSIF, the Paf1 complex, and Tat-SF1 have non-redundant, cooperative roles in RNA polymerase II elongation2009

    • Author(s)
      Yuki Yamaguchi
    • Organizer
      CSHL Meeting on Mechanisms of Eukaryotic Transcription
    • Place of Presentation
      New York, USA
    • Year and Date
      2009-08-27
    • Related Report
      2009 Annual Research Report
  • [Presentation] Dynamic Regulation of heterochromatin sturucture/function in the cell cycle2009

    • Author(s)
      村上洋太
    • Organizer
      第32回日本分子生物学会年会ワークショップ「染色体倍加装置のダイナミクス」
    • Place of Presentation
      神奈川県横浜市
    • Related Report
      2009 Final Research Report
  • [Presentation] Dynamic Regulation of Heterochrimatin2009

    • Author(s)
      Murakami, Y.
    • Organizer
      The fifth International Fission Yeast Meeting
    • Place of Presentation
      東京都
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] Dynamic Regulation of Heterochrimatin2009

    • Author(s)
      村上洋太
    • Organizer
      第24回内藤カンファレンス"Nuclear Dynamics and RNA [II]
    • Place of Presentation
      札幌市
    • Related Report
      2009 Final Research Report
  • [Presentation] Dynamic Regulation of Heterochrimatin2009

    • Author(s)
      村上洋太
    • Organizer
      第24回 内藤カンファレンス"Nuclear Dynamics and RNA[II]
    • Place of Presentation
      北海道 札幌市
    • Related Report
      2009 Annual Research Report
  • [Presentation] トランスポゼース由来の分裂酵母CENP-Bホモログはキネトコアとヘテロクロマチンの境界で機能する。2009

    • Author(s)
      村上洋太
    • Organizer
      第82回日本生化学会大会 シンポジウム「トランスポゾンとの共生が織りなすゲノムシステムのダイナミクス」
    • Place of Presentation
      兵庫県 神戸市
    • Related Report
      2009 Annual Research Report
  • [Presentation] Dynamic Regulation of heterochromatin sturucture/function in the cell cycle2009

    • Author(s)
      村上洋太
    • Organizer
      第32回日本分子生物学会年会ワークショップ「染色体倍加装置のダイナミクス」
    • Place of Presentation
      神奈川県 横浜市
    • Related Report
      2009 Annual Research Report
  • [Presentation] 転写伸長反応制御のメカニズム2008

    • Author(s)
      山口雄輝
    • Organizer
      第31回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] ヘテロクロマチンのダイナミクス2008

    • Author(s)
      村上洋太
    • Organizer
      蛋白研セミナー
    • Place of Presentation
      大阪
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] Dynamic organization of heterochromatin2008

    • Author(s)
      Murakami, Y.
    • Organizer
      Chromosome segregation: Centromeres & Kinetochores, Archachon
    • Place of Presentation
      Bordeaux, France
    • Related Report
      2009 Final Research Report
  • [Presentation] DSIF, the Paf1 complex, and Tat-SF1 have non-redundant, cooperative roles in RNA polymerase II elongation2008

    • Author(s)
      Yamaguchi, Y., Chen, Y., Tsugeno, Y., Handa, H
    • Organizer
      The 8th EMBL Transcription Meeting
    • Place of Presentation
      Heidelberg, Germany
    • Related Report
      2009 Final Research Report
  • [Presentation] Regulation of heterochromatin function by phosphorylation.2008

    • Author(s)
      Shimada, A., Sadaie, M., Nakayama, J-I., Murakami Y.
    • Organizer
      Asia-Pacific Regional S. pombe Meeting
    • Place of Presentation
      Singapore
    • Related Report
      2009 Final Research Report
  • [Presentation] Multifaceted gene regulation by transcription elongation factors2008

    • Author(s)
      Yamaguchi Y.
    • Organizer
      The 21st Naito Conference on Nuclear Dynamics and RNA [I]
    • Place of Presentation
      山梨
    • Related Report
      2009 Final Research Report
  • [Presentation] RNAiに依存するヘテロクロマチン形成におけるnon-coding RNAの転写とダイナミクス2008

    • Author(s)
      村上洋太
    • Organizer
      第2回日本エピジェネティクス研究会年会
    • Place of Presentation
      三島
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] Regulation of heterochromatin function by phosphorylation2008

    • Author(s)
      Yota Murakami
    • Organizer
      Asia-Pacific Regional S. pombe Meeting
    • Place of Presentation
      Singapore
    • Related Report
      2008 Annual Research Report
  • [Presentation] Regulation of heterochromatin function by Phosphorylation2008

    • Author(s)
      Yota Murakami
    • Organizer
      FMBO Workshop : Chromosome segregation : 〓ntromeres & Kinetochores
    • Place of Presentation
      Archachoh, Bordeaux, France
    • Related Report
      2008 Annual Research Report
  • [Presentation] Multifaceted gene regulation by transcription elongation factors2008

    • Author(s)
      Yamaguchi, Y.
    • Organizer
      The 21st Naito Conference on Nuclear Dynamics〓d RNA [I]
    • Place of Presentation
      Yamanashi, Japan
    • Related Report
      2008 Annual Research Report
  • [Presentation] DSIF, the Pafl complex, and Tat-SF1 have non-redundant, cooperative roles in RNA polymerase II elongation2008

    • Author(s)
      Yamaguchi, Y., Chen, Y. Tsugeno, Y., and Handa, H.
    • Organizer
      The 8th EMBL Transcription Meeting
    • Place of Presentation
      Heidelberg, Germany
    • Related Report
      2008 Annual Research Report

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Published: 2008-04-01   Modified: 2018-03-28  

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