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Elucidation of E.coli 100S ribosome structure and formation mechanisms

Research Project

Project/Area Number 20570167
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionOsaka Medical College

Principal Investigator

YOSHIDA Hideji  Osaka Medical College, 医学部, 准教授 (60288735)

Co-Investigator(Kenkyū-buntansha) MAKI Yasushi  大阪医科大学, 医学部, 講師 (60401733)
SAKAI Akiko  大阪医科大学, 医学部, 助教 (30225750)
Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2010: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2009: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2008: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywordsリボソーム / 大腸菌 / ストレス応答 / 100Sリボソーム / 極低温電子顕微鏡 / リボソームサイクル / 翻訳因子 / 定常期 / RFHR二次元電気泳動 / 膜局在
Research Abstract

In order to elucidate the mechanisms of E.coli 100S ribosome formation, the structure of the 100S ribosome was observed by electron cryomicroscopy. The results revealed that the 100S ribosome is formed by two tRNA-free 70S ribosomes through the interactions between their 30S subunits and that the S2, S3 and S5 proteins are likely to be directly involved in the interactions. The functions of these proteins are related to the binding of mRNA to the ribosome. The undesirable binding of mRNA to the 100S ribosomes may be inhibited by the conformational changes around the S2-S5 region.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (21 results)

All 2010 2009 2008 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (11 results) Remarks (4 results)

  • [Journal Article] Structure of the 100S ribosome in the Hibernation stage revealed by electron cryomicroscopy2010

    • Author(s)
      Takayuki Kato, Hideji Yoshida, Tomoko Miyata, Yasushi Maki, Akira Wada, Keiichi Namba
    • Journal Title

      Structure vol.18

      Pages: 719-724

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structure of the 100S ribosome in the Hibernation stage revealed by electron cryomicroscopy2010

    • Author(s)
      Takayuki Kato, Hideji Yoshida, Tomoko Miyata, Yasushi Maki, Akira Wada, Keiichi Namba
    • Journal Title

      Structure

      Volume: 18 Pages: 719-724

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Solution structure of the E.coli ribosome hibernation promoting factor HPF : Implications for the relationship between structure and function2009

    • Author(s)
      Akiko Sato, Takumi Watanabe, Yasushi Maki, Masami Ueta, Hideji Yoshida, Yutaka Ito, Akira Wada, Masaki Mishima
    • Journal Title

      Biochem.Biophys.Res.Commun. vol.389

      Pages: 580-585

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Activities of E.coli ribosomes in IF3 and RMF change to prepare 100S ribosome formation on entering the stationary growth phase2009

    • Author(s)
      Hideji Yoshida, Masami Ueta, Yasushi Maki, Akiko Sakai, Akira Wada
    • Journal Title

      Genes to Cells vol.14

      Pages: 271-280

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Solution structure of the E.coli ribosome hibernation promoting factor HPF : Implications for the relationship between structure and function2009

    • Author(s)
      Akiko Sato, Takumi Watanabe, Yasushi Maki, Masami Ueta, Hideji Yoshida, Yutaka Ito, Akira Wada, Masaki Mishima
    • Journal Title

      Biochem.Biophys.Res.Commun. 389

      Pages: 580-585

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Activities of E. coll ribosomes in IF3 and RMF change to prepare 100S ribosome formation on entering the stationary growth phase2009

    • Author(s)
      H. Yoshida, M. Ueta, Y. Maki, A. Sakai, A. Wada
    • Journal Title

      Genes to Cells 14

      Pages: 271-280

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] Structure of the 100S ribosome demonstrated by electron cryomicroscopy2010

    • Author(s)
      吉田秀司, 加藤貴之, 牧泰史, 古池晶, 上田雅美, 和田明, 難波啓一
    • Organizer
      Ribosome 2010
    • Place of Presentation
      オルビエート(イタリア)
    • Year and Date
      2010-05-04
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] CryoEMにより明らかにされた100Sリボソームの特徴2010

    • Author(s)
      吉田秀司、加藤貴之、宮田知子、牧泰史、古池晶, 他3名
    • Organizer
      第12回日本RNA学会年会
    • Place of Presentation
      一橋記念講堂(東京)
    • Related Report
      2010 Annual Research Report
  • [Presentation] 100Sリボソームの構造とその特徴2010

    • Author(s)
      吉田秀司、加藤貴之、宮田知子、牧泰史、古池晶, 他3名
    • Organizer
      BMB 2010 (第33回日本分子生物学会年会・第83回日本生化学会年会)
    • Place of Presentation
      神戸国際会議場(神戸ポートアイランド)
    • Related Report
      2010 Annual Research Report
  • [Presentation] Structural analysis of 100S ribosome by cryoEM : tRNA binding2009

    • Author(s)
      吉田秀司, 加藤貴之, 牧泰史, 古池晶, 上田雅美, 境晶子, 和田明, 難波啓一
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2009-12-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] Structural analysis of 100S ribosome by cryo-EM2009

    • Author(s)
      加藤貴之, 吉田秀司, 牧泰史, 古池晶, 上田雅美, 境晶子, 和田明, 難波啓一
    • Organizer
      第47回 日本生物物理学会年会
    • Place of Presentation
      アスティ徳島(徳島)
    • Year and Date
      2009-11-01
    • Related Report
      2009 Annual Research Report
  • [Presentation] GraFix法により安定化した100SリボソームのcryoEMによる構造解析2009

    • Author(s)
      吉田秀司、加藤貴之、牧泰史、古池晶、上田雅美、境晶子、和田明、難波啓一
    • Organizer
      第11回RNAミーティング
    • Place of Presentation
      新潟市朱鷺メッセ
    • Year and Date
      2009-07-28
    • Related Report
      2010 Final Research Report
  • [Presentation] GraFix法により安定化した100SリボソームのcryoEMによる構造解析2009

    • Author(s)
      吉田秀司, 加藤貴之, 牧泰史, 古池晶, 上田雅美, 境晶子, 和田明, 難波啓一
    • Organizer
      第11回 RNAミーティング
    • Place of Presentation
      新潟市朱鷺メッセ(新潟)
    • Year and Date
      2009-07-28
    • Related Report
      2009 Annual Research Report
  • [Presentation] E.coli YqjD expresses during the stationary phase and binds to ribosomes2008

    • Author(s)
      Hideji Yoshida, Yasushi Maki, Masami Ueta, Akiko Sakai, Akira Wada
    • Organizer
      RNA2008 Thirteenth annual meeting of the RNA society
    • Place of Presentation
      ベルリン(ドイツ)
    • Year and Date
      2008-08-01
    • Related Report
      2010 Final Research Report
  • [Presentation] 大腸菌膜結合性蛋白質YqjDは定常期に発現してリボソームに結合する2008

    • Author(s)
      吉田秀司, 牧泰史, 境晶子, 上田雅美, 和田明
    • Organizer
      第10回RNAミーティング
    • Place of Presentation
      札幌コンベンションセンター
    • Related Report
      2008 Annual Research Report
  • [Presentation] E. coli YqjD expresses during the stationary phase and binds to ribosomes2008

    • Author(s)
      H. Yoshida, Y. Maki, M. Ueta, A. Sakai, A. Wada
    • Organizer
      RNA2008 Thirteenth annual meeting of the RNA society
    • Place of Presentation
      ベルリン(ドイツ)
    • Related Report
      2008 Annual Research Report
  • [Presentation] 内膜およびリボソームに結合する大腸菌蛋白質YqjDの機能解析2008

    • Author(s)
      吉田秀司, 牧泰史, 境晶子, 上田雅美, 和田明
    • Organizer
      BMB2008(第31回日本分子生物学会年会・第81回日本生化学会大会)
    • Place of Presentation
      神戸国際会議場
    • Related Report
      2008 Annual Research Report
  • [Remarks] ホームページ等

    • URL

      http://www.osaka-med.ac.jp/~yhide/

    • Related Report
      2010 Final Research Report
  • [Remarks] 研究内容又は研究内容に関するwebページ

    • URL

      http://www.osaka-med.ac.jp/~yhide/

    • Related Report
      2010 Annual Research Report
  • [Remarks] 研究内容又は研究内容に関するwebページ

    • URL

      http://www.osaka-med.ac.jp/~yhide/

    • Related Report
      2009 Annual Research Report
  • [Remarks]

    • URL

      http://www.Osaka-med.ac.jp/~yhide/

    • Related Report
      2008 Annual Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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