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Constructing gene expression search engine with partial rank information

Research Project

Project/Area Number 20700268
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Bioinformatics/Life informatics
Research InstitutionOchanomizu University

Principal Investigator

SESE Jun  Ochanomizu University, 大学院・人間文化創成科学研究科, 准教授 (40361539)

Project Period (FY) 2008 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2009: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2008: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords遺伝子発現 / 情報推薦 / 遺伝子オントロジー / 遺伝子発現量 / 検索エンジン / データベース / 推薦システム / 次元削減 / 順位情報
Research Abstract

Recent progress for observation of comprehensive gene expression such as microarray produces many experimental results. The number of records in microarray database is now more than 400,000 experiments. The database provides the search interface by using keywords, but it is difficult to select proper keywords because of the difference of keywords between experimental scientists and users. To overcome these problems, we studied (1) a search method to characterize gene expression with their functions from user-given gene expressions (2) an implementation of the Web site to search the nearest gene expressions.

Report

(3 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • Research Products

    (15 results)

All 2010 2009 2008 Other

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (13 results) Remarks (1 results)

  • [Journal Article] GOMA: Web Utility for Direct Finding of Enriched Gene Ontology Terms from Gene Expression Profile2008

    • Author(s)
      Eriko Muzutani, Jun Sese.
    • Journal Title

      8th IEEE International Conference on BioInformatics and BioEngineering (BIBE2008)

    • NAID

      110006967153

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Presentation] 超高次元データのリアルタイム検索への試み2010

    • Author(s)
      ユスフムカルラマー
    • Organizer
      DEIM Forum 2010
    • Place of Presentation
      淡路島
    • Year and Date
      2010-02-28
    • Related Report
      2009 Annual Research Report
  • [Presentation] 距離木とk近傍グラフを用いた超高次元データの近傍検索2010

    • Author(s)
      渡辺知恵美, 瀬々潤
    • Organizer
      ユスフムカルラマー
    • Place of Presentation
      DEIM, 淡路島
    • Related Report
      2009 Final Research Report
  • [Presentation] Nearest Neighbor for a High-dimensional Data2009

    • Author(s)
      ユスフムカルラマー
    • Organizer
      IPSJ SIGBIO
    • Place of Presentation
      電通大
    • Year and Date
      2009-12-18
    • Related Report
      2009 Annual Research Report
  • [Presentation] MARE : 遺伝子発現量検索エンジンの構築に関する一考察2009

    • Author(s)
      梅澤香矢乃, 瀬々潤
    • Organizer
      DEIM 2009
    • Place of Presentation
      静岡
    • Year and Date
      2009-03-09
    • Related Report
      2008 Annual Research Report
  • [Presentation] NearestNeighbors for a High-dimensi onal Data2009

    • Author(s)
      辺知 恵美, 瀬々潤
    • Organizer
      ユスフムカルラマー
    • Place of Presentation
      SIGBIO, 東京
    • Related Report
      2009 Final Research Report
  • [Presentation] 遺伝子発現量検索エンジンの構築に関する一考察2009

    • Author(s)
      梅澤香矢乃, 瀬々潤
    • Place of Presentation
      DEIM, 静岡
    • Related Report
      2009 Final Research Report
  • [Presentation] GOMA : 遺伝子発現量の簡便機能解析Webアプリケーション2008

    • Author(s)
      水谷絵理子, 瀬々潤
    • Organizer
      分子生物学会
    • Place of Presentation
      神戸
    • Year and Date
      2008-12-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] GOMA : Web utility for direct finding of enriched gene ontology terms from gene expression profile2008

    • Author(s)
      水谷枝理子、瀬々潤
    • Organizer
      IEEE BIBE 2008
    • Place of Presentation
      ギリシア(アテネ)
    • Year and Date
      2008-10-09
    • Related Report
      2008 Annual Research Report
  • [Presentation] GOMA : 遺伝子発現量の簡便機能解析Webアプリケーション2008

    • Author(s)
      水谷絵理子, 瀬々潤
    • Organizer
      情報処理学会SIGBIO
    • Place of Presentation
      札幌
    • Year and Date
      2008-09-18
    • Related Report
      2008 Annual Research Report
  • [Presentation] GOMA:遺伝子発現量の簡便機能解析Webアプリケーション2008

    • Author(s)
      水谷枝理子, 瀬々潤
    • Organizer
      分子生物学会
    • Place of Presentation
      神戸
    • Related Report
      2009 Final Research Report
  • [Presentation] GOMA:遺伝子発現量の簡便機能解析Webアプリケーション2008

    • Author(s)
      水谷枝理子, 瀬々潤
    • Organizer
      SIGBIO
    • Place of Presentation
      札幌
    • Related Report
      2009 Final Research Report
  • [Presentation] GOMA:複雑な遺伝子オントロジーの分かりやすい表示

    • Author(s)
      水谷枝理子, 瀬々潤
    • Organizer
      第7回オープンバイオ研究会
    • Related Report
      2009 Final Research Report
  • [Presentation] 遺伝子群の共通機能に着目したGO表示の研究

    • Author(s)
      水谷枝理子, 瀬々潤
    • Organizer
      第69回情報処理学会全国大会
    • Related Report
      2009 Final Research Report
  • [Remarks]

    • URL

      http://goma.sel.is.ocha.ac.jp/

    • Related Report
      2009 Final Research Report

URL: 

Published: 2008-04-01   Modified: 2016-04-21  

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