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Rational strategy of tuning protein-complex function by ligand

Research Project

Project/Area Number 20750133
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Chemistry related to living body
Research InstitutionNagoya Institute of Technology

Principal Investigator

MIZUNO Toshihisa  Nagoya Institute of Technology, 大学院・工学研究科, 助教 (90345950)

Project Period (FY) 2008 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2009: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2008: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Keywordsナノバイオ / 蛋白質 / バイオテクノロジー
Research Abstract

As a model system of protein-protein interaction, we chose the T7 RNA polymerase-T7 lysozyme pair in this research. By inserting the originally designed coiled-coil protein, which transform its tertiary structure from random coil to coiled-coil structure by the specific ligand peptide, into the T7 lysozyme, we succeeded in tuning the interaction between T7 RNA polymerase and T7 lysozyme by the binding of specific ligand peptide. On the other hand, we also succeeded in constructing the ligand-binding protein, which exhibits a reversible structural alteration following the specific ligand binding. Interestingly, this protein can work even in the in vivo circumstances. By combining this designed ligand-binding protein with various target natural proteins, ligand-binding tuning of protein-protein interactions should be possible in future.

Report

(3 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • Research Products

    (50 results)

All 2010 2009 2008

All Journal Article (17 results) (of which Peer Reviewed: 17 results) Presentation (33 results)

  • [Journal Article] Reconstitution of the Light-harvesting (LH1) Complex Using Zinc-substituted Bacteriochlorophyll a and LH1-polypeptides Isolated from the Purple Photosynthetic Bacterium Rhodospirillum rubrum, Together with all-trans Carotenoids2010

    • Author(s)
      K. Nakagawa, T. Nakano, N. Fukui, A. Nakashima, S. Sakai, T. Mizuno, T. Dewa, K. Iida, A.T. Gardiner, R.J. Cogdell, R. Fujii, H. Hashimoto, M. Nango
    • Journal Title

      Carotenoid Science (in press)

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Reconstitution of the Light-harvesting 1 (LH1) Complex Using LH1-α and LH-1-β Polypeptides, Separately Isolated from the Purple Photosynthetic Bacterium Rhodospirillum rubrum, Together with Bacteriochlorophyll a and All-trans Carotenoids2010

    • Author(s)
      K. Nakagawa, T. Nakano, N. Fukui, A. Nakashima, S. Sakai, T. Mizuno, T. Dewa, K. Iida, A.T. Gardiner, R.J. Cogdell, R. Fujii, H. Hashimoto, M. Nango
    • Journal Title

      Carotenoid Science (in press)

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Carotenoid Specificity During Reconstitution of the Light-harvesting 1 (LH1) Complexes Using LH1-polypeptides Isolated from the Purple Photosynthetic Bacterium Rhodobacter sphaeroides Together with Bacteriochlorophyll a and Carotenoids2010

    • Author(s)
      K. Nakagawa, N. Fukui, T. Nakano, A. Mizuno, A. Nakashima, S. Sakai, T. Mizuno, T. Dewa, K. Iida, A.T. Gardiner, R.J. Cogdell, R. Fujii, H. Hashimoto, M. Nango
    • Journal Title

      Carotenoid Science (in press)

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Reconstitution of the Light-harvesting (LH1) Complex Using Zinc-substituted Bacteriochlorophyll a and LH1-polypeptides Isolated from the Purple Photosynthetic Bacterium Rhodospirillum rubrum, Together with all-trans Carotenoids2010

    • Author(s)
      K.Nakagawa, T.Nakano, N.Fukui, A.Nakashima, S.Sakai, T.Mizuno, T.Dewa, K.Iida, A.T.Gardiner, R.J.Cogdell, R.Fujii, H.Hashimoto, M.Nango
    • Journal Title

      Carotenoid Science (未定)(印刷中)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reconstitution of the Light-harvesting 1 (LH1) Complex Using LH1-α and LH-1-β Polypeptides, Separately Isolated from the Purple Photosynthetic Bacterium Rhodospirillum rubrum, Together with Bacteriochlorophyll a and All-trans Carotenoids2010

    • Author(s)
      K.Nakagawa, T.Nakano, N.Fukui, A. Nakashima, S.Sakai, T.Mizuno, T.Dewa, K.Iida, A.T.Gardiner, R.J.Cogdell, R.Fujii, H.Hashimoto, M.Nango
    • Journal Title

      Carotenoid Science (未定)(印刷中)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Carotenoid Specificity During Reconstitution of the Light-harvesting 1 (LH1) Complexes Using LH1-polypeptides Isolated from the Purple Photosynthetic Bacterium Rhodobacter sphaer oides Together with Bacteriochlorophyll a and Carotenoids2010

    • Author(s)
      K.Nakagawa, N.Fukui, T.Nakano, A.Mizuno, A.Nakashima, S.Sakai, T.Mizuno, T.Dewa, K.Iida, A.T.Gardiner, R.J.Cogdell, R.Fujii, H.Hashimoto, M.Nango
    • Journal Title

      Carotenoid Science (未定)(印刷中)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Manipulation of the Protein-complex function by using an Engineered Heterotrimeric Coiled-coil Switch2009

    • Author(s)
      T. Mizuno, K. Suzuki, T. Imai, Y. Furutani, M. Kudou, M. Oda, H. kandori, K. Tsumoto, T. Tanaka
    • Journal Title

      Org. Biomol. Chem 7

      Pages: 3102-3111

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The effect of the side chain length of Asp and Glu on coordination structure of Cu (2+) in a de novo designed protein2009

    • Author(s)
      D. Shiga, D. Nakane, T. Inomata, H. Matsuda, M. Oda, M. Noda, S. Uchiyama, K. Fukui, Y. Takano, H. Nakamura, T. Mizuno, T. Tanaka
    • Journal Title

      Biopolymer 91

      Pages: 907-916

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Organic Ligand Binding by Hydrophobic Cavity in Designed Tetrameric Coiled-Coil Proteins2009

    • Author(s)
      T. Mizuno, C. Hasegawa, Y. Tanabe, K. Hamajima, T. Muto, Y. Nishi, M. Oda, Y. Kobayashi, T. Tanaka
    • Journal Title

      Chem. Eur. J 15

      Pages: 1491-1498

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Manipulation of the Protein-complex function by using an Engineered Heterotrimeric Coiled-coil Switch2009

    • Author(s)
      T.Mizuno, K.Suzuki, T.Imai, Y.Furutani, M.Kudou, M.Oda, H.kandori, K.Tsumoto, T.Tanaka
    • Journal Title

      Org.Biomol.Chem. 7

      Pages: 3102-3111

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The effect of the side chain length of Asp and Glu on coordination structure of Cu (2+) in a de novo designed protein2009

    • Author(s)
      D.Shiga, D.Nakane, T.Inomata, H.Matsuda, M.Oda, M.Noda, S.Uchiyama, K.Fukui, Y.Takano, H.Nakamura, T.Mizuno, T.Tanaka
    • Journal Title

      Biopolymer 91

      Pages: 907-916

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Target-selective vesicle fusion system with pH-selectivity and responsiveness2009

    • Author(s)
      A.Kashiwada, M.Tsuboi, T.Mizuno, T.Nagasaki, K.Matsuda
    • Journal Title

      Soft Matter. 5

      Pages: 4719-4725

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Organic Ligand Binding by Hydrophobic Cavity in Designed Tetramer is Coiled-Coil Proteins2009

    • Author(s)
      T.Mizuno, C.Hasegawa, Y.Tanabe, K.Hamajima, T.Muto, Y.Nishi, M.Oda, Y.Kobayashi, T.Tanaka
    • Journal Title

      Chemistry : A European Journal 15

      Pages: 1491-1498

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Construction of a pH-Responsive Artificial Membrane Fusion System by Using Designed Coiled-Coil Polypeptides2008

    • Author(s)
      A. Kashiwada, K. Matsuda, T. Mizuno, T. Tanaka
    • Journal Title

      Chem. Eur. J 14

      Pages: 7343-7350

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] 設計タンパク質をモジュールドメインとして利用した外部刺激応答タンパク質の創製2008

    • Author(s)
      水野稔久、織田昌幸、田中俊樹
    • Journal Title

      熱測定 35

      Pages: 227-236

    • NAID

      10025612484

    • Related Report
      2009 Final Research Report 2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Construction of a pH-Responsive Artificial Membrane Fusion System by Using Designed Coiled-Coil Polypeptides2008

    • Author(s)
      A.Kashiwada, K.Matsuda, T.Mizuno, T.Tanaka
    • Journal Title

      Chemistry : A European Journal 14

      Pages: 7343-7350

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Regulation of protein-protein interaction via assembly of coiled-coil domain2008

    • Author(s)
      K.Suzuki, T.Mizuno, T.Tanaka
    • Journal Title

      Nucleic Acids Symp Ser 52

      Pages: 461-461

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] Construction of the Stimuli-dependent Natural Protein Mutants Using the De Novo Designed Ligand-responsible alpha-Helical Coiled-coil2010

    • Author(s)
      Toshihisa Mizuno, Kumiko Suzuki, Kaori Murao, Satoshi Yuzawa, Toshiki Tanaka
    • Organizer
      IFPT 2009
    • Place of Presentation
      中国(北京)
    • Year and Date
      2010-09-18
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] 光合成細菌のアンテナ系モデルタンパク質/色素複合体の再構成と基板上への組織化2010

    • Author(s)
      近藤政晴、中島彩乃、酒井俊亮、中川勝統、橋本秀樹、水野稔久、田中俊樹、出羽毅久、南後守
    • Organizer
      日本化学会第90春季年会(2010)
    • Place of Presentation
      大阪
    • Year and Date
      2010-03-27
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] 光合成でのアンテナ系モデルタンパク質を用いた色素複合体の再構成2010

    • Author(s)
      酒井俊亮、中川勝統、中島彩乃、飯田浩史、藤井律子、橋本秀樹、水野稔久・田中俊樹、出羽毅久、南後守
    • Organizer
      日本化学会第90春季年会(2010)
    • Place of Presentation
      大阪
    • Year and Date
      2010-03-27
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] チャネル構造を有するタンパク質の設計とリガンド結合能の評価2010

    • Author(s)
      右近卓也、水野稔久、出羽毅久、南後守、田中俊樹
    • Organizer
      日本化学会第90春季年会(2010)
    • Place of Presentation
      大阪
    • Year and Date
      2010-03-27
    • Related Report
      2009 Annual Research Report
  • [Presentation] チャネル構造を有する設計蛋白質の構築2010

    • Author(s)
      右近卓也、水野稔久、杉安和憲、竹内正之、出羽毅久、南後守、田中俊樹
    • Organizer
      「分子ナノシステムの創発化学」第1回公開シンポジウム
    • Place of Presentation
      京都
    • Year and Date
      2010-02-05
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] Zn結合性3本鎖α-ヘリカルコイルドコイル蛋白質の設計2009

    • Author(s)
      大草宏一、水野稔久、田邊陽一、織田昌幸、田中俊樹
    • Organizer
      第24回生体機能関連化学シンポジウム
    • Place of Presentation
      九州大学
    • Year and Date
      2009-09-14
    • Related Report
      2009 Final Research Report
  • [Presentation] 有機小分子に結合する人工タンパク質の設計2009

    • Author(s)
      武藤隆史、水野稔久、織田昌幸、田中俊樹
    • Organizer
      第24回生体機能関連化学シンポジウム
    • Place of Presentation
      九州大学
    • Year and Date
      2009-09-14
    • Related Report
      2009 Final Research Report
  • [Presentation] Zn結合性3本鎖α-ヘリカルコイルドコイル蛋白質の設計2009

    • Author(s)
      大草宏一、水野稔久、田邊陽一、織田昌幸、田中俊樹
    • Organizer
      第24回生体機能関連化学シンポジウム
    • Place of Presentation
      九州大学(福岡)
    • Year and Date
      2009-09-14
    • Related Report
      2009 Annual Research Report
  • [Presentation] 有機小分子に結合する人工タンパク質の設計2009

    • Author(s)
      武藤隆史、水野稔久、織田昌幸、田中俊樹
    • Organizer
      第24回生体機能関連化学シンポジウム
    • Place of Presentation
      九州大学(福岡)
    • Year and Date
      2009-09-14
    • Related Report
      2009 Annual Research Report
  • [Presentation] endo-1,3-β-glucanaseの構造や機能における触媒残基とCa2+の役割2009

    • Author(s)
      田邊陽一、三上文三、水野稔久、田中俊樹、織田昌幸
    • Organizer
      第9回日本蛋白質科学会年会
    • Place of Presentation
      熊本
    • Year and Date
      2009-05-20
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] 構造変化を伴う金属イオン結合α-ヘリカルコイルドコイル蛋白質の設計と機能評価2009

    • Author(s)
      大草宏一、水野稔久、田邊陽一、坪井茉奈、柏田歩、織田昌幸、田中俊樹
    • Organizer
      第9回日本蛋白質科学会年会
    • Place of Presentation
      熊本
    • Year and Date
      2009-05-20
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] 構造変化を伴う金属イオン結合三本鎖コイルドコイル蛋白質変異体の構築と機能評価2009

    • Author(s)
      大草宏一、水野稔久、田邊陽一、織田昌幸、田中俊樹
    • Organizer
      日本化学会第89春期年会(2009)
    • Place of Presentation
      日本大学船橋キャンパス
    • Year and Date
      2009-03-29
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] 生理的pHにおいて機能する標的選択的膜融合系の構築2009

    • Author(s)
      坪井茉奈、柏田歩、水野稔久、長崎健、松田清美
    • Organizer
      日本化学会第89春期年会(2009)
    • Place of Presentation
      日本大学船橋キャンパス
    • Year and Date
      2009-03-29
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] Design and Application of Recombinant Proteins Respondent with External Stimuli2009

    • Author(s)
      Toshihisa Mizuno
    • Organizer
      7th International life Surveyor Symposium
    • Place of Presentation
      株式会社日立製作所中央研究所小平記念館
    • Year and Date
      2009-01-29
    • Related Report
      2009 Final Research Report
  • [Presentation] Design and Application of the De Novo Designed Metal-Bind a-helical Coiled- coil Proteins2008

    • Author(s)
      Toshihisa Mizuno, Toshiki Tanaka
    • Organizer
      IUMRS-ICA2008
    • Place of Presentation
      名古屋国際会議場
    • Year and Date
      2008-12-09
    • Related Report
      2009 Final Research Report
  • [Presentation] Design and Application of the De Novo Designed Metal-Bind α-helical Coiled- coil Proteins2008

    • Author(s)
      Toshihisa Mizuno, Toshiki Tanaka
    • Organizer
      IUMRS-ICA2008
    • Place of Presentation
      名古屋国際会議場
    • Year and Date
      2008-12-09
    • Related Report
      2008 Annual Research Report
  • [Presentation] 5本鎖コイルドコイル蛋白質のデザインとリガンド結合評価2008

    • Author(s)
      水野稔久
    • Organizer
      第11回生命化学研究会-生命化学をシステムで捉えたら
    • Place of Presentation
      水上館
    • Year and Date
      2008-11-28
    • Related Report
      2009 Final Research Report
  • [Presentation] The novel methodology to tune the protein-protein interaction by ligand2008

    • Author(s)
      Kumiko Suzuki, Toshihisa Mizuno, Toshiki Tanaka
    • Organizer
      第11回生命化学研究会-生命化学をシステムで捉えたら
    • Place of Presentation
      群馬県利根郡みなかみ町(水上館)
    • Year and Date
      2008-11-28
    • Related Report
      2008 Annual Research Report
  • [Presentation] FRETによる設計タンパク質への有機小分子結合の評価2008

    • Author(s)
      武藤隆史、水野稔久、田中俊樹
    • Organizer
      第3回バイオ関連化学合同シンポジウム
    • Place of Presentation
      東工大すずかけ台キャンパス
    • Year and Date
      2008-09-19
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] 3本鎖ヘテロコイルドコイルを用いたT7リゾチームの活性制御2008

    • Author(s)
      鈴木久美子、水野稔久、工藤基徳、津本浩平、織田昌幸、田中俊樹
    • Organizer
      第3回バイオ関連化学合同シンポジウム
    • Place of Presentation
      東工大すずかけ台キャンパス
    • Year and Date
      2008-09-19
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] 金属イオン応答コイルドコイル変異体の機能評価2008

    • Author(s)
      大草宏一、水野稔久、田邊陽一、織田昌幸、田中俊樹
    • Organizer
      第3回バイオ関連化学合同シンポジウム
    • Place of Presentation
      東工大すずかけ台キャンパス
    • Year and Date
      2008-09-19
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] リガンド結合能を持つ5本鎖コイルドコイル蛋白質の設計2008

    • Author(s)
      萩原宏貴、水野稔久、田中俊樹
    • Organizer
      第3回バイオ関連化学合同シンポジウム
    • Place of Presentation
      東工大すずかけ台キャンパス
    • Year and Date
      2008-09-19
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] de novo設計ポリペプチドを用いたpH応答型ベシクル融合系の構築2008

    • Author(s)
      柏田歩、坪井茉奈、松田清美、水野稔久、田中俊樹
    • Organizer
      第3回バイオ関連化学合同シンポジウム
    • Place of Presentation
      東工大すずかけ台キャンパス
    • Year and Date
      2008-09-18
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] 3本鎖ヘテロコイルドコイルを利用したT7rnapの活性制御2008

    • Author(s)
      鈴木久美子、水野稔久、田中俊樹
    • Organizer
      第23回生体機能関連化学シンポジウム若手フォーラム
    • Place of Presentation
      東工大すずかけ台キャンパス
    • Year and Date
      2008-09-17
    • Related Report
      2009 Final Research Report
  • [Presentation] FRETによる設計タンパク質への有機小分子結合の評価2008

    • Author(s)
      武藤隆史、水野稔久、田中俊樹
    • Organizer
      第23回生体機能関連化学シンポジウム若手フォーラム
    • Place of Presentation
      東工大すずかけ台キャンパス
    • Year and Date
      2008-09-17
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] 3本鎖ヘテロコイルドコイルを利用したT7RNAPの活性制御2008

    • Author(s)
      鈴木久美子、水野稔久、田中俊樹
    • Organizer
      第23回生体機能関連化学シンポジウム若手フォーラム
    • Place of Presentation
      東工大すずかけ台キャンパス
    • Year and Date
      2008-09-17
    • Related Report
      2008 Annual Research Report
  • [Presentation] Regulation of Protein-protein Interaction via Assembly of Coiled-coil domain2008

    • Author(s)
      Kumiko Suzuki, Toshihisa Mizuno, Toshiki Tanaka
    • Organizer
      Joint symposium of 18th International Roundtable on Nucleosides, Nucleotides and Nucleic Acids and 35th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      京都大学百周年時計台記念館
    • Year and Date
      2008-09-11
    • Related Report
      2009 Final Research Report
  • [Presentation] Regulation of Protein-protein Interaction via Assembly of Coiled-coil domain2008

    • Author(s)
      Kumiko Suzuki, Toshihisa Mizuno, Toshiki Tanaka
    • Organizer
      Joint symposium of 18^<th> International Roundtable on Nucleosides, Nucleotides and Nucleic Acids and 35^<th> International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      京都大学 百周年時計台記念館
    • Year and Date
      2008-09-11
    • Related Report
      2008 Annual Research Report
  • [Presentation] The novel methodology to tune the protein-protein interaction by ligand2008

    • Author(s)
      Kumiko Suzuki, Toshihisa Mizuno, Toshiki Tanaka
    • Organizer
      The 17th Meeting of Methods in Protein Structure Analysis (MPSA2008)
    • Place of Presentation
      北海道大学学術交流会会館
    • Year and Date
      2008-08-27
    • Related Report
      2009 Final Research Report
  • [Presentation] Design and Application of the De Novo Designed Metal-Bind α-helical Coiled- coil Proteins2008

    • Author(s)
      Toshihisa Mizuno, Toshiki Tanaka
    • Organizer
      The 17^<th> Meeting of Methods in Protein Structure Analysis (MPSA2008)
    • Place of Presentation
      北海道大学学術交流会会館(札幌)
    • Year and Date
      2008-08-27
    • Related Report
      2008 Annual Research Report
  • [Presentation] 会合機能ペプチドデザインによるビルドアップ抗体アセンブリ2008

    • Author(s)
      梅津光央、中西猛、田中圭介、小池博之、水野稔久、田中俊樹、熊谷泉
    • Organizer
      第20回生体機能関連化学若手の会サマースクール
    • Place of Presentation
      小原温泉かつらや
    • Year and Date
      2008-08-07
    • Related Report
      2009 Final Research Report
  • [Presentation] 会合機能ペプチドデザインによるビルドアップ抗体アセンブリ2008

    • Author(s)
      梅津光央、中西猛、田中圭介、小池博之、水野稔久、田中俊樹、熊谷泉
    • Organizer
      第20回生体機能関連化学若手の会サマースクール
    • Place of Presentation
      小原温泉 かつらや
    • Year and Date
      2008-08-07
    • Related Report
      2008 Annual Research Report
  • [Presentation] 5本鎖コイルドコイル蛋白質の設計2008

    • Author(s)
      水野稔久、田中俊樹
    • Organizer
      第8回日本蛋白質科学会年会
    • Place of Presentation
      タワーホール船堀
    • Year and Date
      2008-06-12
    • Related Report
      2009 Final Research Report 2008 Annual Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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