• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

A Model Development Support Method using Semantic Information

Research Project

Project/Area Number 21700481
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Biomedical engineering/Biological material science
Research Institution財団法人京都高度技術研究所 (2010)
Advanced Software Technology & Mechatronics Research Institute of Kyoto (2009)

Principal Investigator

SHIMAYOSHI Takao  財団法人京都高度技術研究所, 研究部, 副主任研究員 (60373510)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2010: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2009: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords生体生命情報学 / 生理学モデル / 細胞モデル / オントロジ / アノテーション
Research Abstract

It is of importance to facilitate modeling of cell-physiological dynamical functions for pharmaceutical and clinical applications. In this research, Cell Physiology Ontology was firstly designed and constructed for defining a set of vocabularies of terms referred in cell-physiology models. Next, a method for annotation of semantic metadata to cell models in formal description was proposed. Finally, a model development support method using semantic information annotated on cell models was developed.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (25 results)

All 2010 2009 Other

All Journal Article (10 results) (of which Peer Reviewed: 7 results) Presentation (12 results) Remarks (3 results)

  • [Journal Article] 薬物作用推定を目的とした心筋細胞モデルのパラメタ空間解析2010

    • Author(s)
      藤井学, 嶋吉隆夫, 陸建銀, 朝倉圭一, 天野晃, 松田哲也
    • Journal Title

      電子情報通信学会技術研究報告 110

      Pages: 93-97

    • NAID

      110008153921

    • Related Report
      2010 Final Research Report
  • [Journal Article] 低酸素状態再現のために解糖系を導入した心筋細胞モデルの構築2010

    • Author(s)
      天野晃, 冨田幸子, 松岡達, 嶋吉隆夫, 陸健銀, 松田哲也
    • Journal Title

      電子情報通信学会論文誌D J93-D

      Pages: 398-408

    • NAID

      110007588774

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] 低酸素状態再現のために解糖系を導入した心筋細胞モデルの構築2010

    • Author(s)
      天野晃, 他
    • Journal Title

      電子情報通信学会論文誌D

      Volume: J93-D Pages: 398-408

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 心筋組織微小循環シミュレーションを用いた酸素消費分布の評価2010

    • Author(s)
      赤路慶朗, 他
    • Journal Title

      電子情報通信学会技術研究報告

      Volume: 110 Pages: 87-91

    • Related Report
      2010 Annual Research Report
  • [Journal Article] 薬物作用推定を目的とした心筋細胞モデルのパラメタ空間解析2010

    • Author(s)
      藤井学, 他
    • Journal Title

      電子情報通信学会技術研究報告

      Volume: 110 Pages: 93-97

    • Related Report
      2010 Annual Research Report
  • [Journal Article] 低酸素状態再現のために解糖系を導入した心筋細胞モデルの構築2010

    • Author(s)
      天野晃
    • Journal Title

      電子情報通信学会論文誌D J93-D

      Pages: 398-408

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel method to quantify contribution of channels and transporters to membrane potential dynamics.2009

    • Author(s)
      Chae Young Cha, Yukiko Himeno, Takao Shimayoshi, Akira Amano, Akihiro Noma.
    • Journal Title

      Biophysical Journal 97

      Pages: 3086-3094

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] A method for analysis of simultaneous equations in cell models.2009

    • Author(s)
      Takao Shimayoshi, Akira Amano, Tetsuya Matsuda
    • Journal Title

      In Proc of 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society

      Pages: 2343-2346

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] A Method for Analysis of Simultaneous Equations in Cell Models2009

    • Author(s)
      Shimayoshi, Takao
    • Journal Title

      Conf Proc IEEE Eng Med Biol Soc 2009

      Pages: 2343-2346

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel method to quantify contribution of channels and transporters to membranepotential dynamics.2009

    • Author(s)
      Cha, Chae Young
    • Journal Title

      Biophysical Journal 97

      Pages: 3086-3094

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] 薬物作用推定を目的とした心筋細胞モデルのパラメタ空間解析2010

    • Author(s)
      藤井学, 嶋吉隆夫, 陸建銀, 朝倉圭一, 天野晃, 松田哲也
    • Organizer
      電子情報通信学会MBE研究会
    • Place of Presentation
      宮城県仙台市
    • Year and Date
      2010-11-19
    • Related Report
      2010 Final Research Report
  • [Presentation] 心筋組織微小循環シミュレーションを用いた酸素消費分布の評価2010

    • Author(s)
      赤路慶朗,久保田悠太,嶋吉隆夫,天野晃,松田哲也
    • Organizer
      電子情報通信学会MBE研究会
    • Place of Presentation
      宮城県仙台市
    • Year and Date
      2010-11-19
    • Related Report
      2010 Final Research Report
  • [Presentation] A method for semantic denition of experimental protocols.2010

    • Author(s)
      Takao Shimayoshi, Akira Amano, Tetsuya Matsuda.
    • Organizer
      11th International Conference on Systems Biology
    • Place of Presentation
      Edinburgh, UK.
    • Year and Date
      2010-10-11
    • Related Report
      2010 Final Research Report
  • [Presentation] A method for Semantic Definition of Experimental Protocols2010

    • Author(s)
      Takao Shimayoshi, 他
    • Organizer
      11th International Conference on Systems Biology
    • Place of Presentation
      英国,エディンバラ
    • Year and Date
      2010-10-11
    • Related Report
      2010 Annual Research Report
  • [Presentation] Numerical approach to analyze cellular mechanisms in computational models.2010

    • Author(s)
      Takao Shimayoshi
    • Organizer
      BBSRC UK-Japan Collaboration Meeting
    • Place of Presentation
      Oxford, UK.
    • Year and Date
      2010-09-06
    • Related Report
      2010 Final Research Report
  • [Presentation] Numerical Approach to Analyze Cellular Mechanisms in Computational Models2010

    • Author(s)
      Takao Shimayoshi
    • Organizer
      BBSRC UK-Japan Collaboration Meeting
    • Place of Presentation
      英国,オックスフォード
    • Year and Date
      2010-09-06
    • Related Report
      2010 Annual Research Report
  • [Presentation] Cell Physiology Ontology : An Ontology on Cell Physiology2010

    • Author(s)
      Takao Shimayoshi
    • Organizer
      CellML workshop 2010
    • Place of Presentation
      Auckland, New Zealand.
    • Year and Date
      2010-02-25
    • Related Report
      2010 Final Research Report
  • [Presentation] Cell Physiology Ontology : An Ontology on Cell Physiology2010

    • Author(s)
      Shimayoshi, Takao
    • Organizer
      CellML workshop 2010
    • Place of Presentation
      オークランド・ニュージーランド
    • Year and Date
      2010-02-25
    • Related Report
      2009 Annual Research Report
  • [Presentation] Novel Software Tools for Cell Modelling2009

    • Author(s)
      Takao Shimayoshi
    • Organizer
      Cardiac Electro-Mechanical Function : Cell-organ cross-talk revealed via integration of experiments and models
    • Place of Presentation
      Okayama, Japan.
    • Year and Date
      2009-08-03
    • Related Report
      2010 Final Research Report
  • [Presentation] Novel Software Tools for Cell Modelling2009

    • Author(s)
      Shimayoshi, Takao
    • Organizer
      Cardiac Electro-Mechanical Function : Cell-organ cross-talk revealed via integration of experiments and models
    • Place of Presentation
      岡山
    • Year and Date
      2009-08-03
    • Related Report
      2009 Annual Research Report
  • [Presentation] Cybow modeller : User-intuitive tools for cell modelling.2009

    • Author(s)
      Takao Shimayoshi, Akira Amano, Satoshi Matsuoka, Tetsuya Matsuda
    • Organizer
      IUPS2009
    • Place of Presentation
      Kyoto, Japan.
    • Year and Date
      2009-07-29
    • Related Report
      2010 Final Research Report
  • [Presentation] Cybow Modeller : User-Intuitive Tools for Cell Modelling2009

    • Author(s)
      Shimayoshi, Takao
    • Organizer
      36th International Congress of Physiological Sciences
    • Place of Presentation
      京都
    • Year and Date
      2009-07-29
    • Related Report
      2009 Annual Research Report
  • [Remarks] ホームページ等Cell Physiology Ontology

    • URL

      http://cpo.dynabios.org/

    • Related Report
      2010 Final Research Report
  • [Remarks]

    • URL

      http://cpo.dynabios.org/

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://cybow.astem.or.jp/cpo/

    • Related Report
      2009 Annual Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi