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The determination of disulfide connectivity and conformation by the SAIL method

Research Project

Project/Area Number 21770110
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Structural biochemistry
Research InstitutionNagoya University

Principal Investigator

TAKEDA Mitsuhiro  Nagoya University, 理学研究科, 研究員 (90508558)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2010: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2009: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords蛋白質 / NMR / タンパク質 / SAIL法 / ジスルフィド結合
Research Abstract

The determination of disulfide connectivity and conformation in a protein is essential for understanding the structural stability of the protein. However, no method for investigating them has been established. Here, a method for observing cross-bridge NOEs involving two b-protons of different cysteine residues has been developed. In a conventional uniformly isotope-labeled protein, the observation of such a NOE is difficult due to signal overlap and spin diffusion effect. In our approach, a protein whose protons are exclusively deuterated except for the two Cys's β-protons is employed, such that the connectivity and proton-proton distance can readily be determined.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (17 results)

All 2011 2010 2009

All Journal Article (9 results) (of which Peer Reviewed: 9 results) Presentation (8 results)

  • [Journal Article] Construction and performance of an NMR tube with a sample cavity formed within magnetic susceptibility-matched glass.2011

    • Author(s)
      Takeda M, Hallenga K, Shigezane M, Waelchli M, Lohr F, Markley JL, Kainosho M.
    • Journal Title

      J.Magn.Reson. 209

      Pages: 167-173

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Construction and performance of an NMR tube with a sample cavity formed within magnetic susceptibility-matched glass.2011

    • Author(s)
      Takeda M, Hallenga K, Shigezane M, Waelchli M, Lohr F, Markley JL, Kainosho M.
    • Journal Title

      Journal of Magnetic Resonance

      Volume: 209 Pages: 167-173

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis of stereoarray isotope labeled (SAIL) lysine via the head-to-tail conversion of SAIL glutamic acid2011

    • Author(s)
      Terauchi T, Kamikawai T, Vinogradov MG, Starodubtseva EV, Takeda M, Kainosho M.
    • Journal Title

      Organic Letters

      Volume: 13 Pages: 161-163

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Application of SAIL phenylalanine and tyrosine with alternative isotope-labeling patterns for protein structure determination.2010

    • Author(s)
      Takeda M, Ono AM, Terauchi T, Kainosho M.
    • Journal Title

      J.Biomol.NMR 46

      Pages: 45-49

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Detection of the sulfhydryl groups in proteins with slow hydrogen exchange rates and determination of their proton/deuteron fractionation factors using the deuterium-induced effects on the 13C(beta) NMR signals.2010

    • Author(s)
      Takeda M, Jee J, Terauchi T, Kainosho M.
    • Journal Title

      J.Am.Chem.Soc. 132

      Pages: 6254-6260

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Detection of the sulfhydryl groups in proteins with slow hydrogen exchange rates and determination of their proton/deuteron fractionation factors using the deuterium-induced effects on the 13C(beta)NMR signals.2010

    • Author(s)
      Takeda M, Jee J, Terauchi T, Kainosho M
    • Journal Title

      Journal of the American Chemical Society

      Volume: 132 Pages: 6254-6260

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Application of SAIL phenylalanine and tyrosine with alternative isotope-labeling patterns for protein structure determination.2010

    • Author(s)
      武田光広、小野明、寺内勉、甲斐荘正恒
    • Journal Title

      Journal of Biomolecular NMR Vol.46

      Pages: 45-49

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hydrogen exchange rate of tyrosine hydroxyl groups in proteins as studied by the deuterium isotope effect on C(zeta) chemical shifts.2009

    • Author(s)
      Takeda M, Jee J, Ono AM, Terauchi T, Kainosho M.
    • Journal Title

      J.Am.Chem.Soc. 131

      Pages: 18556-18562

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Hydrogen exchange rate of tyrosine hydroxyl groups in proteins as studied by the deuterium isotope effect on C(zeta) chemical shifts.2009

    • Author(s)
      武田光広、JunGoo Jee,小野明、寺内勉、甲斐荘正恒
    • Journal Title

      Journal of the American chemical society Vol.131

      Pages: 18556-18562

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] 蛋白質側鎖OH/SHの水素交換速度の解析2010

    • Author(s)
      武田光広、Chun-Jiun Yang、JunGoo Jee、小野明、寺内勉、甲斐荘正恒
    • Organizer
      第49回NMR討論会
    • Place of Presentation
      東京
    • Year and Date
      2010-11-15
    • Related Report
      2010 Final Research Report
  • [Presentation] 蛋白質側鎖OH/SHの水素交換速度の解析2010

    • Author(s)
      武田光広、Chun-Jiun Yang、JunGoo Jee、小野明、寺内勉、甲斐荘正恒
    • Organizer
      第49回NMR討論会
    • Place of Presentation
      東京タワーホール船堀
    • Year and Date
      2010-11-15
    • Related Report
      2010 Annual Research Report
  • [Presentation] NMR Hydrogen Exchange Study of Tyrosine Hydroxyl and Cysteine Sulfhydryl Groups by Deuterium Isotope Shift Effects2010

    • Author(s)
      Mitsuhiro Takeda, Akira M Ono, Tsutomu Terauchi, JunGoo Jee, Masatsune Kainosho
    • Organizer
      Joint EUROMAR 2010 and 17th ISMAR Conference
    • Place of Presentation
      Florence Italy
    • Year and Date
      2010-07-04
    • Related Report
      2010 Final Research Report
  • [Presentation] NMR Hydrogen Exchange Study of Tyrosine Hydroxyl and Cysteine Sulfhydryl Groups by Deuterium Isotope Shift Effects2010

    • Author(s)
      Mitsuhiro Takeda, Akira Mono, Tsutomu Terauchi, JunGoo Jee, Masatsune Kainosho
    • Organizer
      Joint EUROMAR 2010 and 17th ISMAR Conference
    • Place of Presentation
      Palazzo dei Congressi and Palazzo degli Affari, Florence Italy
    • Year and Date
      2010-07-04
    • Related Report
      2010 Annual Research Report
  • [Presentation] SAIL芳香族アミノ酸による蛋白質の構造・動態解析2009

    • Author(s)
      武田光広、甲斐荘正恒
    • Organizer
      第48回NMR討論会
    • Place of Presentation
      福岡
    • Year and Date
      2009-11-10
    • Related Report
      2010 Final Research Report
  • [Presentation] SAIL芳香族アミノ酸による蛋白質の構造・動態解析2009

    • Author(s)
      武田光広、甲斐荘正恒
    • Organizer
      第48回NMR討論会
    • Place of Presentation
      九州大学百年構造(福岡県)
    • Year and Date
      2009-11-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] Application of SAIL phenylalanine and tyrosine residues with different isotope labeling patterns for structure2009

    • Author(s)
      Mitsuhiro Takeda, Akira Mei Ono, Tsutomu Terauchi, Masatsune Kainosho
    • Organizer
      Asia-Pacific NMR
    • Place of Presentation
      Jeju Korea
    • Year and Date
      2009-10-25
    • Related Report
      2010 Final Research Report
  • [Presentation] Application of SAIL phenylalanine and tyrosine residues with different isotope labeling patterns for structure determination2009

    • Author(s)
      武田光広、甲斐荘正恒
    • Organizer
      The 3rd Asia-Pacific NMR Symposium
    • Place of Presentation
      済州島(韓国)
    • Year and Date
      2009-10-25
    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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