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Comprehensive analysis of epigenome addiction in intrahepatic cholangiocarcinoma

Research Project

Project/Area Number 21K07935
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 53010:Gastroenterology-related
Research InstitutionNihon University (2022-2024)
The University of Tokyo (2021)

Principal Investigator

KOGURE Hirofumi  日本大学, 医学部, 教授 (60568921)

Co-Investigator(Kenkyū-buntansha) 立石 敬介  東京大学, 医学部附属病院, 届出研究員 (20396948)
工藤 洋太郎  東京大学, 医学部附属病院, 助教 (90608358)
Project Period (FY) 2021-04-01 – 2025-03-31
Project Status Completed (Fiscal Year 2024)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2023: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2022: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2021: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords肝内胆管癌
Outline of Research at the Start

クロマチン動態を含めたエピゲノム制御は、ヒトの細胞が慢性的な環境応答に対する合目的的な遺伝子発現を誘導・確立する可能性がある。ICCにおいても膵癌と同様に豊富な間質から成る特徴的な微小環境を有するため、間質から慢性的な刺激を受ける過程で、その外部刺激を生存・増殖にリンクさせ、ICC細胞がaddictするような、重要で特異的なエピゲノム変化が誘導されている可能性がありうる。よってICC特異的なクロマチン構造とその腫瘍生物学的意義、さらにはIDHを含めた遺伝子変異との相関などについての検討を行う。

Outline of Final Research Achievements

The molecular basis for the efficacy of molecularly targeted drugs against cancer is their ability to target oncogene addiction. Intrahepatic cholangiocarcinoma (ICC), one of the most intractable cancers, has a limited number of targetable genomic abnormalities such as IDH1 and FGFR. We reported that IDH1 mutations are responsible for upregulation of the glycolytic gene PFK1 and that IDH1 mutations increase sensitivity to the BET inhibitor JQ1 in ICCs. Epigenomic regulation, including chromatin dynamics, by IDH mutations may induce purposeful gene expression in response to chronic environmental responses.
Since ICCs have a characteristic microenvironment consisting of abundant stroma, it is possible that important and specific epigenomic alterations may be induced that link the external stimuli to survival and proliferation.
We analyzed ICC-specific chromatin structures, their biological significance and the genetic abnormalities that cooperate with IDH mutations.

Academic Significance and Societal Importance of the Research Achievements

本研究ではICC のDNA メチル化、ヒストン修飾とともに、クロマチン構造を解析するが、今のところ類似の報告はなされていない。現在の膵・胆道癌研究の殆どはヒト細胞株およびマウスモデルを用いるが、患者個々の癌細胞のエピゲノムプロファイルは必ずしも共通ではなく既存の細胞株では代用しえない。本研究では患者由来ICCオルガノイドを用いることで、臨床検体のクロマチン構造やその生物学的特性との相関を直接解析できる独自性を有する。またICCにおける遺伝子変異とクロマチン構造の相関は未解明であり、クロマチン構造の制御を念頭においた新たな抗腫瘍効果の分子機構を探索・提唱できる可能性を有している。

Report

(5 results)
  • 2024 Annual Research Report   Final Research Report ( PDF )
  • 2023 Research-status Report
  • 2022 Research-status Report
  • 2021 Research-status Report
  • Research Products

    (10 results)

All 2024 2023 2022 2021

All Journal Article (10 results) (of which Peer Reviewed: 10 results,  Open Access: 5 results)

  • [Journal Article] A comparison of diagnostic utility of new endoscopic scraper combined cell block method and conventional brush catheter for biliary tract cancer2024

    • Author(s)
      Kuniyoshi Noriyuki、Yamada Koji、Osawa Rota、Nomura Shuzo、Fujisawa Mariko、Saito Kei、Imazu Hiroo、Masuda Shinobu、Kogure Hirofumi
    • Journal Title

      DEN Open

      Volume: 4 Issue: 1 Pages: 1-7

    • DOI

      10.1002/deo2.331

    • Related Report
      2024 Annual Research Report 2023 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] WONDER-02: plastic stent vs. lumen-apposing metal stent for endoscopic ultrasound-guided drainage of pancreatic pseudocysts-study protocol for a multicentre randomised non-inferiority trial2024

    • Author(s)
      Saito T, Takenaka M, Hashimoto S, Shiratori T, Yamada R, Kogure H, Nakahara K, Ogura T, Kitano M, Yasuda I, Isayama H, Nakai Y;
    • Journal Title

      Trials

      Volume: 25 Issue: 1 Pages: 559

    • DOI

      10.1186/s13063-024-08373-6

    • URL

      https://marianna-u.repo.nii.ac.jp/records/2001107

    • Related Report
      2024 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A retrospective comparative study of biliary drainage using balloon endoscopy and endoscopic ultrasound for malignant obstruction in patients with surgically altered anatomy2024

    • Author(s)
      Hakuta R, Ishida K, Nakai Y, Kogure H, Sato T, Ishigaki K, Saito T, Hamada T, Takahara N, Fujishiro M
    • Journal Title

      Surgical Endoscopy

      Volume: 38 Issue: 12 Pages: 7269-7277

    • DOI

      10.1007/s00464-024-11329-1

    • Related Report
      2024 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Probe-guided endoscopic system for 5-aminolevulinic acid-based photodynamic diagnosis in cholangiocarcinoma2024

    • Author(s)
      Fujiwara Hiroaki、Furudate Shiho、Takahara Naminatsu、Nakai Yousuke、Kodama Yuki、Arai Junya、Nakagawa Hayato、Ikenoue Tsuneo、Tateishi Keisuke、Kasuga Masato、Fujishiro Mitsuhiro
    • Journal Title

      Photodiagnosis and Photodynamic Therapy

      Volume: 48 Pages: 104268

    • DOI

      10.1016/j.pdpdt.2024.104268

    • URL

      https://marianna-u.repo.nii.ac.jp/records/2001080

    • Related Report
      2024 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Investigation of the usefulness of a bile duct biopsy and bile cytology using a hyperspectral camera and machine learning2024

    • Author(s)
      Norose Tomoko、Ohike Nobuyuki、Nakaya Daiki、Kamiya Kentaro、Sugiura Yoshiya、Takatsuki Misato、Koizumi Hirotaka、Okawa Chie、Ohya Aya、Sasaki Miyu、Aoki Ruka、Nakahara Kazunari、Kobayashi Shinjiro、Tateishi Keisuke、Koike Junki
    • Journal Title

      Pathology International

      Volume: 74 Issue: 6 Pages: 337-345

    • DOI

      10.1111/pin.13438

    • Related Report
      2024 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Diagnostic utility of quantitative analysis of microRNA in bile samples obtained during endoscopic retrograde cholangiopancreatography for malignant biliary strictures2023

    • Author(s)
      Noriyuki Kuniyoshi, Hiroo Imazu, Ryota Masuzaki, Motomi Yamazaki, Suguru Hamana, Shuzo Nomura, Jo Hayama, Rota Osawa, Koji Yamada, Mariko Fujisawa, Kei Saito, Hirofumi Kogure
    • Journal Title

      PLoS One

      Volume: 18 Issue: 8 Pages: e0289537-e0289537

    • DOI

      10.1371/journal.pone.0289537

    • Related Report
      2023 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Gut-Microbiota Dysbiosis in Stroke-Prone Spontaneously Hypertensive Rats with Diet-Induced Steatohepatitis2023

    • Author(s)
      Kanezawa Shini、Moriyama Mitsuhiko、Kanda Tatsuo、Fukushima Akiko、Masuzaki Ryota、Sasaki-Tanaka Reina、Tsunemi Akiko、Ueno Takahiro、Fukuda Noboru、Kogure Hirofumi
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 24 Issue: 5 Pages: 4603-4603

    • DOI

      10.3390/ijms24054603

    • Related Report
      2022 Research-status Report
    • Peer Reviewed
  • [Journal Article] Suppressors of Cytokine Signaling and Hepatocellular Carcinoma2022

    • Author(s)
      Masuzaki Ryota、Kanda Tatsuo、Sasaki Reina、Matsumoto Naoki、Nirei Kazushige、Ogawa Masahiro、Karp Seth J.、Moriyama Mitsuhiko、Kogure Hirofumi
    • Journal Title

      Cancers

      Volume: 14 Issue: 10 Pages: 2549-2549

    • DOI

      10.3390/cancers14102549

    • Related Report
      2022 Research-status Report
    • Peer Reviewed
  • [Journal Article] MNX1-HNF1B Axis Is Indispensable for Intraductal Papillary Mucinous Neoplasm Lineages2022

    • Author(s)
      Kato H, Tateishi K, Fujiwara H, Nakatsuka T, Yamamoto K, Kudo Y, Hayakawa Y, Nakagawa H, Tanaka Y, Ijichi H, Otsuka M, Iwadate D, Oyama H, Kanai S, Noguchi K, Suzuki T, Sato T, Hakuta R, Ishigaki K, Saito K, Saito T, Takahara N, Kishikawa T, Hamada T, Takahashi R, Miyabayashi K, et al.
    • Journal Title

      Gastroenterology

      Volume: 162 Issue: 4 Pages: 1272-1287

    • DOI

      10.1053/j.gastro.2021.12.254

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Prospective Multicenter Study of “Inside Stents” for Biliary Stricture: Multicenter Evolving Inside Stent Registry (MEISteR)2021

    • Author(s)
      Kogure Hirofumi、Kato Hironari、Nakai Yousuke、Isayama Hiroyuki, et al.
    • Journal Title

      Journal of Clinical Medicine

      Volume: 10 Issue: 13 Pages: 2936-2936

    • DOI

      10.3390/jcm10132936

    • Related Report
      2021 Research-status Report
    • Peer Reviewed

URL: 

Published: 2021-04-28   Modified: 2026-01-16  

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