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Analysis of 53BP1 foci using super-resolution microscopy in response to radiation-induced DNA double-strand breaks

Research Project

Project/Area Number 21K17888
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 63020:Radiation influence-related
Research InstitutionKeio University (2023)
Gunma University (2021-2022)

Principal Investigator

Uchihara Yuki  慶應義塾大学, 薬学部(芝共立), 助教 (10883712)

Project Period (FY) 2021-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2023: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2022: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2021: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
KeywordsDNA修復 / 53BP1 / 超高解像度解析 / DNA二本鎖切断 / クロマチン動態 / DNA損傷修復
Outline of Research at the Start

放射線照射により生じるDNA二本鎖切断(DSB)は、細胞運命決定に影響を与えうる重篤な損傷である。これまでにDSB近傍に集積する修復分子である53BP1は、ヌクレオソームが約100 nmの大きさで凝集するクロマチンドメインに密集していることを見出しているが、この密集 (53BP1ナノドメイン) がDSB修復に果たす役割は不明である。本研究では、53BP1ナノドメインを超高解像イメージにより3次元動態的に解析することで、その生理的意義の解明に挑戦する。本研究の達成は、放射線障害の重要な課題の一つであるゲノム安定化維持機構に関わる情報基盤の確立に大きく貢献すると考えている。

Outline of Final Research Achievements

It has been reported that 53BP1 foci are composed of 53BP1 nanodomains at radiation-induced DNA double-strand break (DSB) sites using super-resolution fluorescence microscopy. In this study, we developed an experimental system to measure the distance between 53BP1 nanodomains in three dimensions (DMS: Distance from the Median Spot) using a super-resolution fluorescence microscope 3D-SIM (OMX). Using this experimental system, we analyzed the changes in DMS over time after irradiation and found that the distance between 53BP1 nanodomains is maintained regardless of the time after DSB damage.

Academic Significance and Societal Importance of the Research Achievements

DNA二本鎖切断部位 (DSB) に集積する53BP1は、DSBを中心として左右に約1~2 Mb分布するが、その意義は明らかとなっていない。本研究において構築された実験系および成果は、未だ多くが未知である53BP1の機能解明やゲノム安定性維持機構に関わる知見に貢献すると考えている。

Report

(4 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • Research Products

    (20 results)

All 2024 2023 2022 2021

All Journal Article (9 results) (of which Int'l Joint Research: 7 results,  Peer Reviewed: 9 results,  Open Access: 7 results) Presentation (11 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] Inhibition of intracellular ATP synthesis impairs the recruitment of homologous recombination factors after ionizing radiation2024

    • Author(s)
      Hayashi Ryota、Okumura Hikaru、Isono Mayu、Yamauchi Motohiro、Unami Daiki、Lusi Rahmartani Tania、Yamamoto Masamichi、Kato Yu、Uchihara Yuki、Shibata Atsushi
    • Journal Title

      Journal of Radiation Research

      Volume: - Issue: 3 Pages: 263-271

    • DOI

      10.1093/jrr/rrae005

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Characterization of the signal transduction cascade for inflammatory gene expression in fibroblasts with ATM-ATR deficiencies after Ionizing radiation2024

    • Author(s)
      Haruna Shunji、Okuda Ken、Shibata Akiko、Isono Mayu、Tateno Kohei、Sato Hiro、Oike Takahiro、Uchihara Yuki、Kato Yu、Shibata Atsushi
    • Journal Title

      Radiotherapy and Oncology

      Volume: 194 Pages: 110198-110198

    • DOI

      10.1016/j.radonc.2024.110198

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Calreticulin Upregulation in Cervical Cancer Tissues From Patients After 10 Gy Radiation Therapy2023

    • Author(s)
      Okada Kohei、Sato Hiro、Kumazawa Takuya、Mori Yasumasa、Permata Tiara Bunga Mayang、Uchihara Yuki、Noda Shin-ei、Suzuki Keiji、Ikota Hayato、Yokoo Hideaki、Gondhowiardjo Soehartati、Nakano Takashi、Ohno Tatsuya、Shibata Atsushi
    • Journal Title

      Advances in Radiation Oncology

      Volume: 8 Issue: 3 Pages: 101159-101159

    • DOI

      10.1016/j.adro.2022.101159

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] DNA damage promotes HLA class I presentation by stimulating a pioneer round of translation-associated antigen production2022

    • Author(s)
      Uchihara Yuki、Permata Tiara Bunga Mayang、Sato Hiro、Kawabata-Iwakawa Reika、Katada Sayako、Gu Wenchao、Kakoti Sangeeta、Yamauchi Motohiro、Kato Reona、Gondhowiardjo Soehartati、Hosen Naoki、Yasuhara Takaaki、Shibata Atsushi
    • Journal Title

      Molecular Cell

      Volume: 82 Issue: 14 Pages: 2557-2570.e7

    • DOI

      10.1016/j.molcel.2022.04.030

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] 放射線照射により惹起されるHLAクラスⅠ提示の分子機構2022

    • Author(s)
      内原 脩貴、柴田 淳史
    • Journal Title

      放射線生物研究

      Volume: 57 Pages: 265-284

    • Related Report
      2022 Research-status Report
    • Peer Reviewed
  • [Journal Article] RAP80 suppresses the vulnerability of R-loops during DNA double-strand break repair2022

    • Author(s)
      Yasuhara Takaaki、Kato Reona、Yamauchi Motohiro、Uchihara Yuki、Zou Lee、Miyagawa Kiyoshi、Shibata Atsushi
    • Journal Title

      Cell Reports

      Volume: 38 Issue: 5 Pages: 110335-110335

    • DOI

      10.1016/j.celrep.2022.110335

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] High linear energy transfer carbon-ion irradiation upregulates PD-L1 expression more significantly than X-rays in human osteosarcoma U2OS cells2021

    • Author(s)
      Permata Tiara Bunga Mayang、Sato Hiro、Gu Wenchao、Kakoti Sangeeta、Uchihara Yuki、Yoshimatsu Yukihiko、Sato Itaru、Kato Reona、Yamauchi Motohiro、Suzuki Keiji、Oike Takahiro、Tsushima Yoshito、Gondhowiardjo Soehartati、Ohno Tatsuya、Yasuhara Takaaki、Shibata Atsushi
    • Journal Title

      Journal of Radiation Research

      Volume: 62 Issue: 5 Pages: 773-781

    • DOI

      10.1093/jrr/rrab050

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Modulation of immune responses by DNA damage signaling2021

    • Author(s)
      Uchihara Yuki、Permata Tiara Bunga Mayang、Sato Hiro、Shibata Atsushi
    • Journal Title

      DNA Repair

      Volume: 104 Pages: 103135-103135

    • DOI

      10.1016/j.dnarep.2021.103135

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Expression of non-homologous end joining factor, Ku80, is negatively correlated with PD-L1 expression in cancer cells after X-ray irradiation2021

    • Author(s)
      Kumazawa Takuya、Mori Yasumasa、Sato Hiro、Permata Tiara、Uchihara Yuki、Noda Shin-Ei、Okada Kohei、Kakoti Sangeeta、Suzuki Keiji、Ikota Hayato、Yokoo Hideaki、Gondhowiardjo Soehartati、Nakano Takashi、Ohno Tatsuya、Shibata Atsushi
    • Journal Title

      Oncology Letters

      Volume: 23 Issue: 1 Pages: 29-29

    • DOI

      10.3892/ol.2021.13147

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] 53BP1およびRAP80による放射線誘発DNA二本鎖切断部位の高次クロマチン構造制御2023

    • Author(s)
      内原 脩貴、宇波 大輝、林 僚汰、奥村 光遥、堅田 明子、磯野 真由、宮成 悠介、安原 崇哲、山内 基弘、加藤 優、柴田 淳史
    • Organizer
      日本放射線影響学会第66回大会
    • Related Report
      2023 Annual Research Report
  • [Presentation] 53BP1およびRAP80を介したDNA二本鎖切断部位の高次クロマチン構造制御2023

    • Author(s)
      内原 脩貴、柴田 淳史
    • Organizer
      第46回日本分子生物学会年会
    • Related Report
      2023 Annual Research Report
  • [Presentation] DNA損傷応答シグナル伝達を介したHLAクラスIの抗原提示2023

    • Author(s)
      内原 脩貴, Permata Tiara Bunga Mayang, 佐藤 浩央, 川端 麗香, 堅田 明子, Gu Wenchao, Kakoti Sangeeta, 山内 基弘, 加藤 玲於奈, Gondhowiardjo Soehartati, 保仙 直毅, 安原 崇哲, 柴田 淳史
    • Organizer
      第143回 日本薬学会年会
    • Related Report
      2022 Research-status Report
  • [Presentation] DNA damage promotes HLA class I presentation by stimulating a pioneer round of translation-associated antigen production2023

    • Author(s)
      Yuki Uchihara, Tiara Bunga Mayang Permata, Hiro Sato, Reika Kawabata-Iwakawa, Sayako Katada, Wenchao Gu, Sangeeta Kakoti, Motohiro Yamauchi, Reona Kato, Soehartati Gondhowiardjo, Naoki Hosen, Takaaki Yasuhara, Atsushi Shibata
    • Organizer
      The International Ataxia-Telangiectasia Workshop 2023
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research
  • [Presentation] DNA損傷シグナルによるHLAクラスIの抗原提示の分子メカニズム2022

    • Author(s)
      内原 脩貴, Permata Tiara Bunga Mayang, 佐藤 浩央, 川端 麗香, 堅田 明子, Gu Wenchao, Kakoti Sangeeta, 山内 基弘, 加藤 玲於奈, Gondhowiardjo Soehartati, 保仙 直毅, 安原 崇哲, 柴田 淳史
    • Organizer
      2022年度 日本生化学会関東支部例会
    • Related Report
      2022 Research-status Report
  • [Presentation] 放射線照射により促進されるパイオニアラウンド翻訳を介したHLAクラスIの提示2022

    • Author(s)
      内原 脩貴, Permata Tiara Bunga Mayang, 佐藤 浩央, 川端 麗香, 堅田 明子, Gu Wenchao, Kakoti Sangeeta, 山内 基弘, 加藤 玲於奈, Gondhowiardjo Soehartati, 保仙 直毅, 安原 崇哲, 柴田 淳史
    • Organizer
      日本放射線影響学会第65回大会
    • Related Report
      2022 Research-status Report
  • [Presentation] DNA損傷が惹起するATR-AKT-mTORC1-S6Kシグナル伝達経路を介したHLAクラスIの提示2022

    • Author(s)
      内原 脩貴, 柴田 淳史
    • Organizer
      第81回日本癌学会学術総会
    • Related Report
      2022 Research-status Report
  • [Presentation] DNA損傷シグナルに伴い活性化されるHLAクラスI提示の分子機構2022

    • Author(s)
      内原 脩貴, 柴田 淳史
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Research-status Report
  • [Presentation] DNA損傷が惹起するHLAクラスIの抗原提示の分子機構2022

    • Author(s)
      内原 脩貴, Permata Tiara, Bunga Mayang, 佐藤 浩央, 川端 麗香, 堅田 明子, Gu Wenchao, Kakoti Sangeeta, 山内 基弘, 加藤 玲於奈, Gondhowiardjo Soehartati, 保仙 直毅, 安原 崇哲, 柴田 淳史
    • Organizer
      日本薬学会第142年会
    • Related Report
      2021 Research-status Report
  • [Presentation] 放射線照射により促進されるHLAクラスIの抗原提示の分子機構2021

    • Author(s)
      内原 脩貴, Permata Tiara, Bunga Mayang, 佐藤 浩央, 川端 麗香, 堅田 明子, Gu Wenchao, Kakoti Sangeeta, 山内 基弘, 加藤 玲於奈, Gondhowiardjo Soehartati, 保仙 直毅, 安原 崇哲, 柴田 淳史
    • Organizer
      日本放射線影響学会第64回大会
    • Related Report
      2021 Research-status Report
  • [Presentation] DNA損傷が惹起するナンセンス変異依存mRNA分解機構を介した抗原産生およびHLAクラスIの提示2021

    • Author(s)
      内原 脩貴, Permata Tiara, Bunga Mayang, 佐藤 浩央, 川端 麗香, 堅田 明子, Gu Wenchao, Kakoti Sangeeta, 山内 基弘, 加藤 玲於奈, Gondhowiardjo Soehartati, 保仙 直毅, 安原 崇哲, 柴田 淳史
    • Organizer
      第44回日本分子生物学会年会
    • Related Report
      2021 Research-status Report

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Published: 2021-04-28   Modified: 2025-01-30  

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