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Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia

Research Project

Project Areaゲノム科学の総合的推進に向けた大規模ゲノム情報生産・高度情報解析支援
Project/Area Number 221S0002
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Research InstitutionNational Institute of Genetics

Principal Investigator

KOHARA Yuji  国立遺伝学研究所, 系統生物研究センター, 特任教授 (70135292)

Co-Investigator(Kenkyū-buntansha) KATO Kazuto  大阪大学, 医学(系)研究科(研究院), 教授 (10202011)
TOYODA Atsushi  国立遺伝学研究所, 生命情報研究センター, 特任准教授 (10267495)
KUROKI Yoko  東北大学, 東北メディカルメガバンク機構, 非常勤講師 (10344037)
SUGANO Sumio  東京大学, 新領域創成科学研究科, 教授 (60162848)
SUZUKI Yutaka  東京大学, 新領域創成科学研究科, 教授 (40323646)
HAYASHI Tetsuya  九州大学, 医学(系)研究科(研究院), 教授 (10173014)
YAMAMOTO Ken  久留米大学, 医学部, 教授 (60274528)
TSUJI Shoji  東京大学, 医学部附属病院, 教授 (70150612)
INOUE Ituro  国立遺伝学研究所, 総合遺伝研究系, 教授 (00192500)
KUROKAWA Ken  東京工業大学, 地球生命研究所, 教授 (20343246)
MORISHITA Shinichi  東京大学, 新領域創成科学研究科, 教授 (90292854)
NAKAMURA Yasukazu  国立遺伝学研究所, 生命情報研究センター, 教授 (60370920)
TABATA Satoshi  公益財団法人かずさDNA研究所, その他部局, 所長 (70197549)
KUHARA Satoshi  九州大学, (連合)農学研究科(研究院), 教授 (00153320)
IWASAKI Wataru  東京大学, 大学院理学系研究科, 准教授 (50545019)
SESE Jun  国立研究開発法人産業技術総合研究所, 創薬基盤研究部門, 主任研究員 (40361539)
TAKAHASHI Hiroki  千葉大学, 真菌医学研究センター, 准教授 (60548460)
ASAI Kiyoshi  東京大学, 新領域創成科学研究科, 教授 (30356357)
KASAHARA Masahiro  東京大学, 新領域創成科学研究科, 講師 (60376605)
SAKAKIBARA Yasubumi  慶應義塾大学, 理工学部, 教授 (10287427)
YADA Tetsushi  九州工業大学, 大学院情報工学研究院, 教授 (10322728)
桑野 良三  新潟大学, 脳研究所, フェロー (20111734)
徳永 勝士  東京大学, 医学(系)研究科(研究院), 教授 (40163977)
小笠原 直毅  奈良先端科学技術大学院大学, バイオサイエンス研究科, 教授 (10110553)
Co-Investigator(Renkei-kenkyūsha) YAMAGATA Zentaro  山梨大学, 大学院医学工学総合研究部, 教授 (10210337)
MUTO Kaori  東京大学, 医科学研究所, 教授 (50345766)
IDA Ryuichi  同志社大学, 大学院グローバルスタディーズ研究科, 特別客員教授 (40127543)
MASUI Tohru  慶應義塾大学, 医学部臨床遺伝学センター, 教授 (50150082)
KURIYAMA Mariko  独立行政法人国立成育医療研究センター, 共同研究員
TAKAGI Toshihisa  東京大学, 大学院理学系研究科, 教授 (30110836)
FUJIYAMA Asao  国立遺伝学研究所, 生命情報研究センター, 教授 (60142311)
HATTORI Masahira  早稲田大学, 理工学術院, 教授 (70175537)
OGURA Yoshitoshi  九州大学, 大学院医学研究院, 准教授 (40363585)
TOKUNAGA Katsushi  東京大学, 大学院医学系研究科, 教授 (40163977)
KUWANO Ryozo  新潟大学, 脳研究所, フェロー (20111734)
OHASHI Jun  東京大学, 大学院理学系研究科, 准教授 (80301141)
ITOH Takehiko  東京工業大学, 大学院生命理工学研究科, 教授 (90501106)
HIRAKAWA Hideki  かずさDNA研究所, 研究員 (80372746)
NOGUCHI Hideki  国立遺伝学研究所, 先端ゲノミクス推進センター, 特任准教授 (50333349)
MATSUOKA Satoshi  東京工業大学, 学術国際情報センター, 教授 (20221583)
OGASAWARA Naotake  奈良先端科学技術大学院大学, 学長 (10110553)
NAKAMURA Kensuke  前橋工科大学, 生命情報学科, 教授 (20212095)
HAMADA Michiaki  早稲田大学, 理工学術院, 准教授 (00596538)
KANAYA Shigehiko  奈良先端科学技術大学院大学, 教授 (90224584)
Research Collaborator ANZAI Yuichiro  慶應義塾大学, 理工学部, 教授
OKADA Kiyotaka  自然科学研究機構, 理事
SAKAKI Yoshiyuki  静岡雙葉学園, 理事長
TAKAKU Fumimaro  日本医学会, 会長
TOYOSHIMA Kumao  理化学研究所, 研究顧問
NAKAMURA Keiko  JT生命誌研究館, 館長
HOTTA Yoshiki  (財)井上科学振興財団, 理事長
YONEZAWA Akinori  千葉工業大学, 人工知能・ソフトウェア技術研究センター, 所長
YOSHIKAWA Hiroshi  大阪大学, 名誉教授
YOSHIDA Mitsuaki  (財)がん研究会, 理事
INOKO Hidetoshi  東海大学, 医学部, 教授
TODA Tatsushi  神戸大学, 大学院医学研究科, 教授
INAZAWA Johji  東京医科歯科大学, 難治疾患研究所, 教授
GOJOBORI Takashi  国立遺伝学研究所, 生命情報研究センター, 教授
URUSHIHARA Hideko  筑波大学, 教授・名誉教授
TAKEDA Hiroyuki  東京大学, 大学院理学研究科, 教授
SHIROISHI Toshihiko  国立遺伝学研究所, 系統生物研究センター, 教授
ITOH Takashi  九州大学, 大学院医学研究院, 教授
SATOH Noriyuki  沖縄科学技術大学院大学, 教授
MATSUDA Hideo  大阪大学, 大学院情報科学研究科, 教授
GOTO Susumu  京都大学, 化学研究所, 准教授
TSUDA Masataka  東北大学, 大学院生命科学研究科, 教授
Project Period (FY) 2010-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Keywords次世代DNAシーケンサー / RNA-seq / ChIP-seq / de novo配列決定 / 個人ゲノム / リシーケンシング / GWAS / インフォームドコンセント / 次世代DNAシーケンサ
Outline of Final Research Achievements

We have provided technologies of large scale and high quality genomics and bioinformatics to many KAKENHI projects, 60 to 90 subjects every year and altogether 464 subjects, based on application and selection. This kind of support became possible by concentrating to a limited number of DNA sequencing centers under the situation that there was unexpectedly fast advancement of these technologies in the world. Our activity has led to 363 papers including the Coelacanth genome paper. The KAKENHI subjects that we supported cover all the KAKENHI items and almost divisions of life science domain. Furthermore, we have developed new methodologies to solve the problems that emerged from the support activity : One of them is the genome assembly software PLATANUS that has become a key method to decipher difficult genomes. Such a virtuous circle and the outcome show that the platform is essential and effective in life sciences.

Report

(7 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • 2010 Annual Research Report

Research Products

(553 results)

All 2017 2016 2015 2014 2013 2012 2011 2010 Other

All Journal Article Presentation Book Remarks

  • [Journal Article] Insight into the flagella type III export revealed by the complex structure of the type III ATPase and its regulator.2017

    • Author(s)
      Imada, K., Minamino, T., Uchida, Y., Kinoshita, M., Namba, K.
    • Journal Title

      PNAS

      Volume: 110 Issue: 13 Pages: 12271-12276

    • DOI
      10.1073/pnas
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The Gonium pectorale genome demonstrates cooption of cell cycle regulation during the evolution of multicellularity.2016

    • Author(s)
      Erik R. Hanschen, Tara N. Marriage, Patrick J. Ferris, Takashi Hamaji, Atsushi Toyoda, Asao Fujiyama, Rafik Neme, Hideki Noguchi, Yohei Minakuchi, Masahiro Suzuki, Hiroko Kawai-Toyooka, David R. Smith, Halle Sparks, Jaden Anderson, Robert Bakaric, Victor Luria, Amir Karger, Marc Kirschner, et al.
    • Journal Title

      Nature Communications

      Volume: 7 Pages: 11370-11370

    • DOI
      10.1038/ncomms11370
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Oncofetal protein IGF2BP3 facilitates the activity of proto-oncogene protein eIF4E through the destabilization of EIF4E-BP2 mRNA2016

    • Author(s)
      Mizutani R., Imamachi N., Suzuki Y., Yoshida H., Tochigi N., Oonishi T., Suzuki Y., Akimitsu N.
    • Journal Title

      Oncogene

      Volume: 2015 Nov 2

    • DOI
      10.1038/onc.2015.410
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Ezh2 regulates the Lin28/let-7 pathway to restrict activation of fetal gene signature in adult hematopoietic stem cells2016

    • Author(s)
      Oshima M, Hasegawa N, Mochizuki-Kashio M, Muto T, Miyagi S, Koide S, Yabata S, Wendt G, Saraya A, Wang C, Shimoda K, Suzuki Y, Iwama A.
    • Journal Title

      Exp Hematol.

      Volume: 44(4) Pages: 282-296

    • DOI
      10.1016/j.exphem.2015.12.009
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] From the laboratory to the field: assaying histone methylation at <i>FLOWERING LOCUS C</i> in naturally growing <i>Arabidopsis halleri</i>2016

    • Author(s)
      Nishio H, Buzas DM, Nagano AJ, Suzuki Y, Sugano S, Ito M, Morinaga S, Kudoh H.
    • Journal Title

      Genes & Genetic Systems

      Volume: 2016 May 2 Issue: 1 Pages: 15-26

    • DOI
      10.1266/ggs.15-00071
    • NAID
      130005165463
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Histone H3K36 trimethylation is essential for multiple silencing mechanisms in fission yeast2016

    • Author(s)
      Shota Suzuki, Hiroaki Kato, Yutaka Suzuki, Yuji Chikashige, Yasushi Hiraoka, Hiroshi Kimura, Koji Nagao, Chikashi Obuse, Shinya Takahata and Yota Murakami
    • Journal Title

      Nucleic Acids Res.

      Volume: 44 (9) Pages: 4147-4162

    • DOI
      10.1093/nar/gkw008
    • NAID
      120005819302
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] COSMOS: accurate detection of somatic structural variations through asymmetric comparison between tumor and normal samples2016

    • Author(s)
      Yamagata, Koichi; Yamanishi, Ayako; Kokubu, Chikara; Takeda, Junji; Sese, Jun
    • Journal Title

      Nucleic Acids Res.

      Volume: 44 (8)

    • DOI
      10.1093/nar/gkw026
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Japanese Consortium for Amyotrophic Lateral Sclerosis Research (JaCALS). Next-generation sequencing of 28 ALS-related genes in a Japanese ALS cohort.2016

    • Author(s)
      Ryoichi Nakamura, Jun Sone, Naoki Atsuta, Genki Tohnai, Hazuki Watanabe, Daichi Yokoi, Masahiro Nakatochi, Hirohisa Watanabe, Mizuki Ito, Jo Senda, Masahisa Katsuno, Fumiaki Tanaka, Yuanzhe Li, Yuishin Izumi, Mitsuya Morita, Akira Taniguchi, Osamu Kano, Masaya Oda, Satoshi Kuwabara, Koji Abe.
    • Journal Title

      Neurobiol Aging.

      Volume: 39 Pages: 219-219

    • DOI
      10.1016/j.neurobiolaging.2015.11.030
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat.2016

    • Author(s)
      Mariko Naito, Yoshitoshi Ogura, Takehiko Itoh, Mikio Shoji, Masaaki Okamoto, Tetsuya Hayashi, and Koji Nakayama
    • Journal Title

      DNA Res

      Volume: 23 Pages: 11-16

    • DOI
      10.1093/dnares/dsv032
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] HTLV-1 bZIP factor impairs anti-viral immunity by inducing co-inhibitory molecule, T cell immunoglobulin and ITIM domain (TIGIT).2016

    • Author(s)
      Yasuma K, Yasunaga JI, Takemoto K, Sugata K, Takenouchi N, Nakagawa M, Suzuki Y, and Matsuoka M.
    • Journal Title

      PLoS Pathog

      Volume: 12

    • DOI
      10.1371/journal.ppat.1005372
    • NAID
      120005763385
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Genome-wide association study of clinically-defined gout identifies multiple risk loci and its association with clinical subtypes2016

    • Author(s)
      Matsuo H, et al.
    • Journal Title

      Annals of the Rheumatic Diseases

      Volume: 印刷中 Pages: 625-659

    • DOI
      10.1136/annrheumdis-2014-206191
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The Genomic Basis of Parasitism in the Strongyloides Clade of Nematodes.2016

    • Author(s)
      Hunt, V. L. Tsai, I. J. Coghlan, A. Reid, A. J. Holroyd, N. Foth, B. J. Tracey, A. Cotton, J. A. Stanley, E. J. Beasley, H. Bennett, H. M. Brooks, K. Harsha, B. Kajitani, R. Kulkarni, A. Harbecke, D. Nagayasu, E et.al
    • Journal Title

      Nature Genetics

      Volume: 48 Pages: 299-307

    • DOI
      10.1038/ng.3495
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Ethics of stem cell research - learning from human genome ELSI research2016

    • Author(s)
      Kazuto Kato.
    • Journal Title

      Proceedings of Uehara Carnegie Oxford Conference

      Volume: - Pages: 117-124

    • Related Report
      2015 Annual Research Report
  • [Journal Article] MOCCS: clarifying DNA-binding motif ambiguity using ChIP-Seq data2016

    • Author(s)
      Ozaki H, Iwasaki W
    • Journal Title

      Comput. Biol. Chem.

      Volume: in press

    • DOI
      10.1016/j.compbiolchem.2016.01.014
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genomic and metagenomic analysis of microbes in a soil environment affected by the 2011 Great East Japan Earthquake Tsunami2016

    • Author(s)
      Hiraoka S, Machiyama A, Ijichi M, Inoue K, Oshima K, Hattori M, Yoshizawa S, Kogure K, and Iwasaki W
    • Journal Title

      BMC Genomics

      Volume: 17 Pages: 53-53

    • DOI
      10.1186/s12864-016-2380-4
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Bioinformatics tools for lncRNA research2016

    • Author(s)
      Junichi Iwakiri, Michiaki Hamada, Kiyoshi Asai
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

      Volume: 1859(1) Pages: 23-30

    • DOI
      10.1016/j.bbagrm.2015.07.014
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Draft genome sequence of the pathogenic filamentous fungus Aspergillus lentulus IFM 54703T2016

    • Author(s)
      Kusuya Y, Sakai K, Takahashi H, Yaguchi T
    • Journal Title

      Genome Announc

      Volume: 4

    • DOI
      10.1128/genomea.01568-15
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] TNF receptor-associated factor-2 and -5 differentially regulate the instructive IL-6 receptor signaling that requires for Th17 development.2016

    • Author(s)
      Takaki H, Takeda M, Tahara M, Shingai M, Oshiumi H, Matsumoto M, Seya T.
    • Journal Title

      Journal of Immunology

      Volume: 191(9) Pages: 1246-1257

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] HAP2/GCS1 Is Involved in the Sexual Reproduction System of the Marine Macroalga<i> Ulva compressa</i> (Ulvales, Chlorophyta)2015

    • Author(s)
      Yamazaki, T., Endo, M., Ito, K., Suzuki, R., Ota, S., Kuwano, K., Miyamura, S., Toyoda, A. and Kawano, S.
    • Journal Title

      CYTOLOGIA

      Volume: 79 Issue: 4 Pages: 575-584

    • DOI
      10.1508/cytologia.79.575
    • NAID
      130004801645
    • Year and Date
      2015-01-16
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A Transformation System Using rbcS N-Terminal Region Fused with GFP Demonstrates Pyrenoid Targeting of the Small Subunit of RubisCO in <i>Ulva compressa</i>2015

    • Author(s)
      Suzuki, R., Yamazaki, T., Toyoda, A. and Kawano, S.:
    • Journal Title

      CYTOLOGIA

      Volume: 79 Issue: 4 Pages: 427-428

    • DOI
      10.1508/cytologia.79.427
    • NAID
      130004801646
    • Year and Date
      2015-01-16
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Analysis of RNA decay factor mediated RNA stability contributions on RNA abundance.2015

    • Author(s)
      Sho Maekawa, Naoto Imamachi, Takuma Irie, Hidenori Tani, Kyoko Matsumoto, Rena Mizutani, Katsutoshi Imamura, Miho Kakeda, Tetsushi Yada, Sumio Sugano, Yutaka Suzuki and Nobuyoshi Akimitsu.
    • Journal Title

      BMC genomics

      Volume: 16 Pages: 1-1

    • DOI
      10.1186/s12864-015-1358-y
    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A Novel Mutation in ELOVL4 Leading to Spinocerebellar Ataxia (SCA) With the Hot Cross Bun Sign but Lacking Erythrokeratodermia: A Broadened Spectrum of SCA342015

    • Author(s)
      Ozaki K, Doi H, Mitsui J, Sato N, Iikuni Y, Majima T, Yamane K, Irioka T, Ishiura H, Doi K, Morishita S, Higashi M, Sekiguchi T, Koyama K, Ueda N, Miura Y, Miyatake S, Matsumoto N, Yokota T, Tanaka F, Tsuji S, Mizusawa H, Ishikawa K.
    • Journal Title

      JAMA Neurol.

      Volume: 72 Pages: 797-805

    • DOI
      10.1001/jamaneurol.2015.0610
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Roles of mRNA-fate modulators Dhh1 and Pat1 in TNRC6-dependent gene silencing recapitulated in yeast.2015

    • Author(s)
      Tsuboi, T., Yamazaki, R., Nobuta, R., Ikecuhi, K., Makino, S., Ohtaki, Y., Suzuki, Y., Yoshihisa, T., Trotta, C., and Inada, T.
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 290 Pages: 16021-16030

    • DOI
      10.1074/jbc.m114.634592
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] New Susceptibility Gene, IKZF1, for Cold Medicine&#8211;Related Stevens-Johnson Syndrome/Toxic Epidermal Necrolysis with Severe Mucosal Involvements.2015

    • Author(s)
      Ueta M, Sawai H, Sotozono C, Hitomi Y, Kaniwa N, Kim MK, Seo KY, Yoon KC, Joo CK, Kannabiran C, Wakamatsu TH, Sangwan V, Rathi V, Basu S, Ozeki T, Mushiroda T, Sugiyama E, Maekawa K, Nakamura R, Aihara M, Matsunaga K, Sekine A, Gomes JÁP, Hamuro J, Saito Y, Kubo M, Kinoshita S, Tokunaga K.
    • Journal Title

      J Allergy Clin Immunol

      Volume: 未定 Pages: 03744-0

    • DOI
      10.1016/j.jaci.2014.12.1916
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Domestication and cereal feeding developed domestic pig-type intestinal microbiota in animals of suidae.2015

    • Author(s)
      Ushida K, Tsuchida S, Ogura Y, Toyoda A, Maruyama F.
    • Journal Title

      Anim Sci J.

      Volume: Aug 27 Pages: 12492-12492

    • DOI
      10.1111/asj.12492
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Draft Genome Sequence of Lactobacillus gorillae strain KZ01T, isolated from a western lowland gorilla.2015

    • Author(s)
      Tsuchida S, Nezuo M, Tsukahara M, Ogura Y, Hayashi T, Ushida K.
    • Journal Title

      Genome Announc.

      Volume: 3 Pages: 1-1

    • DOI
      10.1128/genomea.01196-15
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Comparative genome and transcriptome analyses of the social amoeba Acytostelium subglobosum that accomplishes multicellular development without germ-soma differentiation.2015

    • Author(s)
      Urushihara H, Kuwayama H, Fukuhara K, Itoh T, Kagoshima H, Shin-I T, Toyoda A, Ohishi K, Taniguchi T, Noguchi H, Kuroki Y, Hata T, Uchi K, Mohri K, King JS, Insall RH, Kohara Y, Fujiyama A.
    • Journal Title

      BMC Genomics

      Volume: 16 Pages: 80-80

    • DOI
      10.1186/s12864-015-1278-x
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Dynamic transition of transcription and chromatin landscape during fission yeast adaptation to glucose starvation.2015

    • Author(s)
      Oda A, Takemata N, Hirata Y, Miyoshi T, Suzuki Y, Sugano S, and Ohta K
    • Journal Title

      Genes Cells

      Volume: 5 Pages: 392-407

    • DOI
      10.1111/gtc.12229
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Genome Analysis of a Novel Bradyrhizobium sp. DOA9 Carrying a Symbiotic Plasmid2015

    • Author(s)
      Okazaki S, Noisangiam R, Okubo T, Kaneko T, Oshima K, Hattori M, Teamtisong K, Songwattana P, Tittabutr P, Boonkerd N, Saeki K, Sato S, Uchiumi T, Minamisawa K, *Teaumroong N.
    • Journal Title

      PLOS ONE

      Volume: 10(2) Pages: 1-18

    • DOI
      10.1371/journal.pone.0117392
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Spatial Interplay between Polycomb and Trithorax Complexes Controls Transcriptional Activity in T Lymphocytes.2015

    • Author(s)
      Onodera, A., Tumes, D. J., Watanabe, Y., Hirahara, K., Kaneda, A., Sugiyama, F., Suzuki, Y., and Nakayama, T.
    • Journal Title

      Mol Cell Biol

      Volume: 35 Pages: 3841-3853

    • DOI
      10.1128/mcb.00677-15
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Tepidicaulis marinum gen. nov., sp. nov., a novel marine bacterium denitrifying nitrate to nitrous oxide strictly under microaerobic conditions.2015

    • Author(s)
      Mio Takeuchi, Takao Yamagishi, Yoichi Kamagata, Kenshiro Oshima, Masahira Hattori, Taiki Katayama, Satoshi Hanada, Hideyuki Tamaki, Katsumi Marumo, Hiroto Maeda, Munetomo Nedachi, Wataru Iwasaki, Yuichi Suwa, and Susumu Sakata.
    • Journal Title

      Int. J. Syst. Evol. Microbiol.

      Volume: in press Pages: 1749-1754

    • DOI
      10.1099/ijs.0.000167
    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] RNA-seq transcriptional profiling of an arbuscular mycorrhiza provides insights into regulated and coordinated gene expression in Lotus japonicus and Rhizophagus irregularis.2015

    • Author(s)
      Handa, Y., Nishide, H., Takeda, N., Suzuki, Y., Kawaguchi, M., Saito, K.
    • Journal Title

      Plant and Cell Physiology

      Volume: 56 Pages: 1490-1511

    • NAID
      120006650838
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mapping the genetic diversity of HLA haplotypes in the Japanese populations2015

    • Author(s)
      W. Y. Saw, X. Liu, C. C. Khor, F. Takeuchi, T. Katsuya, R. Kimura, T. Nabika, T. Ohkubo, Y. Tabara, K. Yamamoto, M. Yokota, Japanese Genome Variation Consortium, Y. Y. Teo, and N. Kato
    • Journal Title

      Sci Rep.

      Volume: 5 Pages: 17855-17855

    • DOI
      10.1038/srep17855
    • NAID
      120005820884
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Suggested Involvement of PP1/PP2A Activity and De Novo Gene Expression in Anhydrobiotic Survival in a Tardigrade, Hypsibius dujardini, by Chemical Genetic Approach.2015

    • Author(s)
      Tanaka, S., Tanaka, J., Miwa Y., Horikawa, D.D., Katayama, T., Arakawa, K., Toyoda, A., Kubo, T., Kunieda, T.
    • Journal Title

      PLoS ONE

      Volume: 10

    • DOI
      10.1371/journal.pone.0118272
    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis2015

    • Author(s)
      Sato, K., Kuroki, Y., Kumita, W., Fujiyama, A., Toyoda, A., Kawai, J., Iriki, A., Sasaki, E., Okano, H., Sakakibara, Y.
    • Journal Title

      Scientific Reports

      Volume: 5 Pages: 16894-16894

    • DOI
      10.1038/srep16894
    • Related Report
      2015 Annual Research Report
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  • [Journal Article] Identification of a gene cluster responsible for hydrogen evolution in Vibrio tritonius strain AM2 with transcriptional analyses.2015

    • Author(s)
      Yuta Matsumura, Hidayu Al-saari, Sayaka Mino, Satoshi Nakagawa, Fumito Maruyama, Yoshitoshi Ogura, Tetsuya Hayashi, Ken Kurokawa, Toko Sawabe, Tomoo Sawabe.
    • Journal Title

      Int. J. Hydrogen Energy

      Volume: 40 Pages: 9137-9146

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Regnase-1 and Roquin Regulate a Common Element in Inflammatory mRNAs by Spatiotemporally Distinct Mechanisms.2015

    • Author(s)
      Takashi Mino, Yasuhiro Murakawa, Akira Fukao, Alexis Vandenbon, Hans-Hermann Wessels, Daisuke Ori, Takuya Uehata, Sarang Tartey, Shizuo Akira, Yutaka Suzuki, Carola G. Vinuesa, Uwe Ohler,&#8232;Daron M. Standley, Markus Landthaler, Toshinobu Fujiwara, Osamu Takeuchi.
    • Journal Title

      Cell

      Volume: 161 Pages: 1058-1073

    • DOI
      10.1016/j.cell.2015.04.029
    • NAID
      120005608042
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Complete genome sequence of Methylobacterium aquaticum strain 22A isolated from a moss, Racomitrium japonicum.2015

    • Author(s)
      Tani A., Ogura Y., Hayashi T., Kimbara K.
    • Journal Title

      Genome Announcements

      Volume: 3

    • DOI
      10.1128/genomea.00266-15
    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
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  • [Journal Article] Variants associated with Gaucher disease in multiple system atrophy2015

    • Author(s)
      Mitsui J, Matsukawa T, Sasaki H, Yabe I, Nakahara Y, Momose Y, Takahashi Y, Hara K, Kakita A, Yamada M, Takahashi H, Onodera O, Nishizawa M, Watanabe H, Nakashima K, Ito H, Izumi Y, Kaji R, Kato T, Tsuji S, et al.
    • Journal Title

      Annals of Clinical and Translational Neurology

      Volume: 2 Pages: 417-26

    • DOI
      10.1002/acn3.185
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Complete genome sequence of a phenanthrene degrader, Mycobacterium sp. strain EPa45 (NBRC 110737), isolated from a phenanthrene-degrading consortium2015

    • Author(s)
      Kato H, Ogawa N, Ohtsubo Y, Oshima K, Toyoda A, Mori H, Nagata Y, Kurokawa K, Hattori M, Fujiyama A, Tsuda M
    • Journal Title

      Genome Announc

      Volume: 3

    • DOI
      10.1128/genomea.00782-15
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance2015

    • Author(s)
      Kato H, Mori H, Maruyama F, Toyoda A, Oshima K, Endo R, Fuchu G, Miyakoshi M, Dozono A, Ohtsubo Y, Nagata Y, Hattori M, Fujiyama A, Kurokawa K, Tsuda M
    • Journal Title

      DNA Res

      Volume: 22 Pages: 413-424

    • DOI
      10.1093/dnares/dsv023
    • NAID
      120005850199
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Draft genome sequence of the archiascomycetous yeast Saitoella complicata2015

    • Author(s)
      Yamauchi K, Kondo S, Hamamoto M, Takahashi Y, Ogura Y, Hayashi T, Nishida H
    • Journal Title

      Genome Announcements

      Volume: 3

    • DOI
      10.1128/genomea.00220-15
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Defining the genome features of Escherichia albertii, an emerging enteropathogen closely related to Escherichia coli.2015

    • Author(s)
      Ooka T, Ogura Y, Katsura K, Seto K, Kobayashi H, Kawano K, Tokuoka E, Furukawa M, Harada S, Yoshino S, Seto J, Ikeda T, Yamaguchi K, Murase K, Gotoh Y, Imuta N, Nishi J, Gomes TA, Beutin L, Hayashi T.
    • Journal Title

      Genome Biology and Evolution

      Volume: 7(12) Pages: 3170-3179

    • DOI
      10.1093/gbe/evv211
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence.2015

    • Author(s)
      Kojima H, Ogura Y, Yamamoto N, Togashi T, Mori H, Watanabe T, Nemoto F, Kurokawa K, Hayashi T, Fukui M.
    • Journal Title

      The ISME Journal

      Volume: in press Pages: 1166-1176

    • DOI
      10.1038/ismej.2014.209
    • NAID
      120005667717
    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A genetic mechanism for female-limited Batsian mimicry in Pupilio butterfly.2015

    • Author(s)
      H. Nishikawa, T Iijima, R Kajitani, et. al.
    • Journal Title

      Nature Getetics

      Volume: 47 Pages: 405-409

    • DOI
      10.1038/ng.3241
    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Aggregation of rare/low-frequency variants of the mitochondria respiratory chain-related proteins in rheumatoid arthritis patients.2015

    • Author(s)
      Mitsunaga S, Hosomichi K, Okudaira Y, Nakaoka H, Suzuki Y, Kuwana M, Sato S, Kaneko Y, Homma Y, Oka A, Shiina T, Inoko H, Inoue I.
    • Journal Title

      Journal of human genetics

      Volume: 60 Pages: 449-454

    • DOI
      10.1038/jhg.2015.50
    • NAID
      40020561735
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Germline mutation rates and the long-term phenotypic effects of mutation accumulation in wild-type laboratory mice and mutator mice2015

    • Author(s)
      Arikuni Uchimura, Mayumi Higuchi, Yohei Minakuchi, Mizuki Ohno, Atsushi Toyoda, Asao Fujiyama, Ikuo Miura, Shigeharu Wakana, Jo Nishino, Takeshi Yagi
    • Journal Title

      Genome Research

      Volume: 25 Pages: 1-10

    • DOI
      10.1101/gr.186148.114
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] How should the legal framework for the protection of human genomic data be formulated?-Implications from the revision processes of the Act on the Protection of Personal Information (PPI Act)2015

    • Author(s)
      Natsuko Yamamoto, Minae Kawashima, Takanori Fujita, Masatomo Suzuki and Kazuto Kato
    • Journal Title

      Journal of human genetics

      Volume: オンライン Pages: 225-226

    • DOI
      10.1038/jhg.2014.121
    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Epigenome-wide association study suggests that SNPs in the promoter region of RETN influence plasma resistin level via effects on DNA methylation at neighboring sites.2015

    • Author(s)
      M. Nakatochi, S. Ichihara, K. Yamamoto, K. Ohnaka, Y. Kato, S. Yokota, A. Hirashiki, K. Naruse, H, Asano, H. Izawa, T. Matsubara, and M. Yokota
    • Journal Title

      Diabetologia

      Volume: 58 Pages: 2781-2190

    • DOI
      10.1007/s00125-015-3763-9
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.2015

    • Author(s)
      N. Kato (他104名, 山本63番目)
    • Journal Title

      Nature Genetics

      Volume: 47 Pages: 1282-1293

    • DOI
      10.1038/ng.3405
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Submicroscopic deletions at 13q32.1 cause congenital microcoria.2015

    • Author(s)
      Fares-Taie, L. Gerber, S. Tawara, A. Ramirez-Miranda, A. Douet, J. Y. Verdin, H. Guilloux, A. Zenteno, J. C. Kondo, H. Moisset, H. Passet, B. Yamamoto, K. Iwai, M. Tanaka, T. Nakamura, Y. Kimura, W. Bole-Feysot, C. Vilotte, M. Odent, S. Vilotte, J. L. Munnich, A. Regnier, A. Chassaing, N. et al.
    • Journal Title

      Am J Hum Genet.

      Volume: 96 Pages: 631-639

    • DOI
      10.1016/j.ajhg.2015.01.014
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci2015

    • Author(s)
      M.Yokota(他49 名、47番目)et al
    • Journal Title

      Hum Mol Genet.

      Volume: 23(4) Pages: 1108-1119

    • DOI
      10.1093/hmg/ddu583
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] DomSign:a top-down annotation pipeline to enlarge enzyme space in the protein universe.2015

    • Author(s)
      Wang T, Mori H, Zhang C, Kurokawa K, Xing X, Yamada T
    • Journal Title

      BMC Bioinfo.

      Volume: 16 Pages: 96-96

    • DOI
      10.1186/s12859-015-0499-y
    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] FuncTree: Functional Analysis and Visualization for Large-Scale Omics Data2015

    • Author(s)
      Uchiyama T, Irie M, Mori H, Kurokawa K, Yamada T.
    • Journal Title

      PLoS ONE

      Volume: 10

    • DOI
      10.1371/journal.pone.0126967
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] The naming of names: guidelines for gene nomenclature in Marchantia.2015

    • Author(s)
      Bowman JL, Araki T, Arteaga-Vazquez MA, Berger F, Dolan L, Haseloff J, Ishizaki K, Kyozuka J, Lin SS, Nagasaki H, Nakagami H, Nakajima K, Nakamura Y, Ohashi-Ito K, Sawa S, Shimamura M, Solano R, Tsukaya H, Ueda T, Watanabe Y, Yamato KT, Zachgo S, Kohchi T.
    • Journal Title

      Plant Cell Physiol.

      Volume: pcv193

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] DNA data bank of Japan (DDBJ) progress report.2015

    • Author(s)
      Mashima J, Kodama Y, Kosuge T, Fujisawa T, Katayama T, Nagasaki H, Okuda Y, Kaminuma E, Ogasawara O, Okubo K, Nakamura Y, Takagi T.
    • Journal Title

      Nucleic Acids Res.

      Volume: gkv1105

    • DOI
      10.1093/nar/gkv1105
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments.2015

    • Author(s)
      Shunichi Kosugi, Hideki Hirakawa, and Satoshi Tabata
    • Journal Title

      Bioinformatics

      Volume: 31 Pages: 3133-3141

    • DOI
      10.1093/bioinformatics/btv465
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Somatic Primary piRNA Biogenesis Driven by cis-Acting RNA Elements and trans-Acting Yb.2015

    • Author(s)
      Ishizu H, Iwasaki YW, Hirakata S, Ozaki H, Iwasaki W, Siomi H, Siomi MC
    • Journal Title

      Cell Reports.

      Volume: 12 Pages: 429-40

    • DOI
      10.1016/j.celrep.2015.06.035
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: Detection of more than 230 subtropical marine species.2015

    • Author(s)
      Masaki Miya et al.
    • Journal Title

      Roy. Soc. Open Sci.

      Volume: 2 Pages: 150088-150088

    • DOI
      10.1098/rsos.150088
    • NAID
      120006220784
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Selection of Orthologous Genes for Construction of a Highly Resolved Phylogenetic Tree and Clarification of the Phylogeny of Trichosporonales Species2015

    • Author(s)
      Takashima, M., Manabe, R., Iwasaki, W., Ohyama, A., Ohkuma, M., and Sugita, T.
    • Journal Title

      PLoS One

      Volume: 10

    • DOI
      10.1371/journal.pone.0131217
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species.2015

    • Author(s)
      Nakatani Y, Mello CC, Hashimoto S, Shimada A, Nakamura R, Tsukahara T, Qu W, Yoshimura J, Suzuki Y, Sugano S, Takeda H, Fire A, Morishita S.
    • Journal Title

      BMC Genomics

      Volume: 16(1) Pages: 978-978

    • DOI
      10.1186/s12864-015-2198-5
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A linear time algorithm for detecting long genomic regions enriched with a specific combination of epigenetic states.2015

    • Author(s)
      Ichikawa, K., Morishita, S.
    • Journal Title

      BMC Genomics

      Volume: 16

    • DOI
      10.1186/1471-2164-16-s2-s8
    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Clinicopathological features of the first Asian family having vocal cord and pharyngeal weakness with distal myopathy due to a MATR3 mutation2015

    • Author(s)
      Yamashita S, Mori A, Nishida Y, Kurisaki R, Tawara N, Nishikami T, Misumi Y, Ueyama H, Imamura S, Higuchi Y, Hashiguchi A, Higuchi I, Morishita S, Yoshimura J, Uchino M, Takashima H, Tsuji S, Ando Y.
    • Journal Title

      Neuropathology and Applied Neurobiology

      Volume: 41 Pages: 276-277

    • DOI
      10.1111/nan.12179
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Hybrid De Novo Genome Assembly Using MiSeq and SOLiD Short Read Data.2015

    • Author(s)
      Tsutomu Ikegami, Toyohiro Inatsugi, Isao Kojima, Myco Umemura, Hiroko Hagiwara, Masayuki Machida, Kiyoshi Asai
    • Journal Title

      PLoS ONE

      Volume: 10(4)

    • DOI
      10.1371/journal.pone.0126289
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Learning chromatin states with factorized information criteria.2015

    • Author(s)
      Michiaki Hamada, Yukiteru Ono, Ryohei Fujimaki, Kiyoshi Asai
    • Journal Title

      Bioinformatics

      Volume: 未定 Pages: 2426-2433

    • DOI
      10.1093/bioinformatics/btv163
    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A semi-supervised learning approach for RNA secondary structure prediction.2015

    • Author(s)
      Haruka Yonemoto, Kiyoshi Asai, Michiaki Hamada
    • Journal Title

      Computational biology and chemistry

      Volume: 未定 Pages: 72-79

    • DOI
      10.1016/j.compbiolchem.2015.02.002
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Visualizing translocation dynamics and nascent transcript errors in paused RNA polymerases in vivo.2015

    • Author(s)
      Imashimizu M., Takahashi H., Oshima T., McIntosh C., Bubunenko M., Court DL., and Kashlev M.
    • Journal Title

      Genome Biol.

      Volume: 16 Pages: 98-98

    • DOI
      10.1186/s13059-015-0666-5
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Draft genome sequence of the pathogenic filamentous fungus Aspergillus udagawae strain IFM 46973T2015

    • Author(s)
      Kusuya Y, Takahashi-Nakaguchi A, Takahashi H, Yaguchi T
    • Journal Title

      Genome Announc

      Volume: 3(4)

    • DOI
      10.1128/genomea.00834-15
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] High-speed westfall-young permutation procedure for genome-wide association studies2015

    • Author(s)
      Terada A, Kim H, Sese J.
    • Journal Title

      Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics

      Volume: 1 Pages: 17-26

    • DOI
      10.1145/2808719.2808721
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A colony multiplex quantitative PCR-based 3S3DBC method and variations of It for screening DNA libraries2015

    • Author(s)
      Yang An, Atsushi Toyoda, Chen Zhao, Asao Fujiyama, and Kiyokazu Agata
    • Journal Title

      PLoS One

      Volume: 10

    • DOI
      10.1371/journal.pone.0116997
    • NAID
      120005555486
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Gene activation-associated long noncoding RNAs function in mouse preimplantation development.2015

    • Author(s)
      Hamazaki N, Uesaka M, Nakashima K, Agata K, Imamura T
    • Journal Title

      Development

      Volume: 142 Pages: 910-920

    • DOI
      10.1242/dev.116996
    • NAID
      120005707874
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A fluorescence-based screening assay for identification of hepatitis C virus NS3 helicase inhibitors and characterization of their inhibitory mechanism2015

    • Author(s)
      Hidenori Tani, Naoto Imamachi, Rena Mizutani, Katsutoshi Imamura, Yoendae Kwon, Satoru Miyazaki, Sho Maekawa, Yutaka Suzuki, Nobuyoshi Akimitsu
    • Journal Title

      Nuclear Bodies and Noncoding RNAs: Methods and Protocols

      Volume: 1262 Pages: 305-20

    • DOI
      10.1007/978-1-4939-2253-6_19
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Draft genome sequence of the archiascomycetous yeast Saitoella complicata.2015

    • Author(s)
      Kenta Yamauchi, Shinji Kondo, Makiko Hamamoto, Yurika Takahashi, Yoshitoshi Ogura, Tetsuya Hayashi, Hiromi Nishida
    • Journal Title

      Genome Announc.

      Volume: in press

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-wide association study identifies a PSMD3 variant associated with neutropenia in interferon-based therapy for chronic hepatitis C.2015

    • Author(s)
      Iio E, Matsuura K, Nishida N, Maekawa S, Yatsuhashi H, Kurosaki M, Izumi N, Hiasa Y, Masaki N, Ide T, Hino K, Tamori A, Honda M, Kaneko S, Mochida S, Nomura H, Nishiguchi S, Okuse C, Itoh Y, Yoshiji H, Sakaida I, Yamamoto K, Watanabe H, Hige S, Matsumoto A, Tanaka E, Tokunaga K, and Tanaka Y.
    • Journal Title

      Hum. Genet.

      Volume: 134

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Polymorphism in CCR1/CCR3 Is Associated with Narcolepsy2015

    • Author(s)
      Toyoda H, Miyagawa T, Koike A, Kanbayashi T, Kawamura Y, Otowa T, Miyashita A, Kashiwase K, Khor SS, Yamasaki M, Kuwano R, Sasaki T, Ishigooka J, Kuroda K, Kume K, Chiba S, Yamada N, Okawa M, Hirata K, Mizuki N, Uchimura N, Shimizu T, Inoue Y, Honda Y, Mishima K, Honda M, Tokunaga K
    • Journal Title

      Brain Behav. Immun.

      Volume: in press

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing2015

    • Author(s)
      Doi K, Monjo T, Hoang PH, Yoshimura J, Yurino H, Mitsui J, Ishiura H, Takahashi Y, Ichikawa Y, Goto J, Tsuji S, Morishita S.
    • Journal Title

      Bioinformatics.

      Volume: 30 Pages: 815-22

    • DOI
      10.1093/bioinformatics/btt647
    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A machine learning based approach to de novo sequencing of glycans from tandem mass spectrometry spectrum.2015

    • Author(s)
      Kumozaki, S., Sato, K., and Sakakibara, Y.
    • Journal Title

      IEEE/ACM Trans Comput Biol Bioinform,

      Volume: in press

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MetaVelvet-SL: An extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning.2015

    • Author(s)
      Afiahayati, Sato, K., and Sakakibara, Y.
    • Journal Title

      DNA Research

      Volume: 22 Pages: 69-77

    • DOI
      10.1093/dnares/dsu041
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 医療情報の共有・利用における現状と課題―医療情報共有における一般市民の意識調査2015

    • Author(s)
      橋本泰成
    • Journal Title

      医療・生命と倫理・社会

      Volume: 12

    • Related Report
      2014 Annual Research Report
  • [Journal Article] 「全ゲノム解析研究に関する一般市民を対象とした意識調査」の結果報告2015

    • Author(s)
      大橋範子・大北全俊
    • Journal Title

      医療・生命と倫理・社会

      Volume: 12

    • Related Report
      2014 Annual Research Report
  • [Journal Article] パーソナルゲノム時代の解析データの共有―データ公開・共有方針と倫理的対応2015

    • Author(s)
      三成寿作
    • Journal Title

      医療・生命と倫理・社会

      Volume: 12

    • Related Report
      2014 Annual Research Report
  • [Journal Article] 個人の遺伝情報の保護における国レベルでのルール形成に向けた試論―個人情報保護法とその改正法を中心に2015

    • Author(s)
      山本奈津子・鈴木正朝・川嶋実苗・藤田卓仙
    • Journal Title

      医療・生命と倫理・社会

      Volume: 12

    • Related Report
      2014 Annual Research Report
  • [Journal Article] 社会とともに進めるゲノム医学研究―国際ワークショップ開催報告2015

    • Author(s)
      吉澤剛
    • Journal Title

      医療・生命と倫理・社会

      Volume: 12

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Single-cell analysis of lung adenocarcinoma cell lines reveals diverse expression patterns of individual cells invoked by a molecular target drug treatment.2015

    • Author(s)
      Suzuki A, Matsushima K, Makinoshima H, Sugano S, Kohno T, Tsuchihara K, Suzuki Y.
    • Journal Title

      Genome Biology

      Volume: 16 Pages: 66-66

    • DOI
      10.1186/s13059-015-0636-y
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data. DNA methylation patterns.2015

    • Author(s)
      Suzuki A, Wakaguri H, Yamashita R, Kawano S, Tsuchihara K, Sugano S, Suzuki Y, Nakai K.
    • Journal Title

      Nucleic Acids Res

      Volume: 43 Pages: 1-5

    • DOI
      10.1093/nar/gku1080
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Regnase-1 and Roquin regulate common inflammation-related mRNAs in translation-dependent and independent manners.2015

    • Author(s)
      Takashi Mino, Yasuhiro Murakawa, Akira Fukao, Alexis Vandenbon, Hans-Hermann Wessels, Daisuke Ori, Takuya Uehata, Sarang Tartey, Shizuo Akira, Yutaka Suzuki, Carola G. Vinuesa, Uwe Ohler, Daron M. Standley, Markus Landthaler, Toshinobu Fujiwara, Osamu Takeuchi
    • Journal Title

      Cell

      Volume: in press

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Discovery of osmotic sensitive transcription factors in fish intestine via a transcriptomic approach.2014

    • Author(s)
      Marty Kwok-Shing Wong, Haruka Ozaki, Yutaka Suzuki, Wataru Iwasaki, and Yoshio Takei.
    • Journal Title

      BMC Genomics

      Volume: 15 Pages: 1134-1134

    • DOI
      10.1186/1471-2164-15-1134
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Light and pheromone-sensing neurons regulates cold habituation through insulin signalling in Caenorhabditis elegans2014

    • Author(s)
      Ohta, A., Ujisawa T., Sonoda S., Kuhara, A.
    • Journal Title

      Nature Communications

      Volume: 5:4412 Pages: 1-12

    • DOI
      10.1038/ncomms5412
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The newt reprograms mature RPE cells into a unique multipotent state for retinal regeneration.2014

    • Author(s)
      Islam, M.R., Nakamura, K., Casco-Robles, M.M., Kunahong, A., Inami, W., Toyama, F., Maruo, F. and Chiba, C.
    • Journal Title

      Sci Rep

      Volume: 4, 6043 Pages: 6043-6043

    • DOI
      10.1038/srep06043
    • NAID
      120005477902
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Sperm proteases that may be involved in the initiation of sperm motility in the newt, Cynops pyrrhogaster.2014

    • Author(s)
      Yokoe M., Sano M., Shibata H., Shibata D., Takayama-Watanabe E., Inaba, K. and Watanabe, A.
    • Journal Title

      Int. J. Mol. Sci.

      Volume: 15 Pages: 15210-15224

    • DOI
      10.3390/ijms150915210
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A transcriptome for the study of early processes of retinal regeneration in the adult newt, Cynops pyrrhogaster.2014

    • Author(s)
      K. Nakamura, M. R. Islam, M. Takayanagi, H. Yasumuro, W. Inami, A. Kunahong, R. M. Casco-Robles, F. Toyama and C. Chiba
    • Journal Title

      PLoS ONE

      Volume: 9

    • DOI
      10.1371/journal.pone.0109831
    • NAID
      120005496692
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli2014

    • Author(s)
      Imamura K, Imamachi N, Akizuki G, Kumakura M, Kawaguchi A, Nagata K, Kato A, Kawaguchi Y, Sato H, Yoneda M, Kai C, Yada T, Suzuki Y, Yamada T, Ozawa T, Kaneki K, Inoue T, Kobayashi M, Kodama T, Wada Y, Sekimizu K and Akimitsu N.
    • Journal Title

      Mol. Cell

      Volume: 53 Pages: 393-406

    • DOI
      10.1016/j.molcel.2014.01.009
    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Identification of the Carotenoid Modifying Gene PALE YELLOW PETAL 1 as an Essential Factor in Xanhtophyll Esterification and Yellow Flower Pigmentation in Tomato (Solanum lycopersicum).2014

    • Author(s)
      Ariizumi T, Kishimoto S, Kakami R, Maoka T, Hirakawa H, Suzuki Y, Ozeki Y, Shirasawa K, Bernillon S, Okabe Y, Moing A, Asamizu E, Rothan C, Ohmiya A & Ezura H
    • Journal Title

      The Plant Journal

      Volume: 79 Pages: 453-465

    • DOI
      10.1111/tpj.12570
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Inermediate Form Between Alternating Hemiplegia of Childhood and Rapid-Onset Dystonia-Parkinsonism.2014

    • Author(s)
      Sasaki M, Ishii A, Saito Y, Hirose S.
    • Journal Title

      Movement Disorders

      Volume: 29 Pages: 153-154

    • DOI
      10.1002/mds.25659
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Distinct neurologocal disorders with ATP1A3 mutations.2014

    • Author(s)
      Heinzen, E.L.*, Arzimanoglou, A., Brashear, A., Clapcote, S.J., Gurrieri, F., Goldstein, D.B., Johannesson, S.H., Mikati, M.A., Neville, B., Nicole, S., Ozelius, L.J., Poulsen, H., Schyns, T., Sweadner, K.J., van den Maagdenberg, A., Vilsen, B., the ATP1A3 Working Group (included Ikeda, K.).
    • Journal Title

      Lancent Neurol.

      Volume: 13 Pages: 503-14

    • DOI
      10.1016/s1474-4422(14)70011-0
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Genotype-Phenotype Correlations in Alternating Hemiplegia of Childhood.2014

    • Author(s)
      Sasaki M, Ishii A, Saito Y, (中略), Tsuji S and Hirose S.
    • Journal Title

      NEUROLOGY

      Volume: 82 Pages: 482-490

    • DOI
      10.1212/wnl.0000000000000102
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Gene Content Evolution in Discobid Mitochondria Deduced from Phylogenic Position and Complete Mitochondrial Genome of Tsukubamonas globosa.2014

    • Author(s)
      Kamikawa R, Kolisko M, Nishimura Y, Yabuki A, rown MW, Sohta A. Ishikawa, Ishida K, Roger AJ, Hashimoto T, Inagaki Y
    • Journal Title

      Genome Biol. Evol.

      Volume: 第6巻2号 Pages: 305-315

    • DOI
      10.1093/gbe/evu015
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] A Bead-based Normalization for Uniform Sequencing depth (BeNUS) protocol for multi-samples sequencing exemplified by HLA-B.2014

    • Author(s)
      Hosomichi K, Mitsunaga S, Nagasaki H, Inoue Ituro.
    • Journal Title

      BMC Genomics

      Volume: 15 Pages: 645-645

    • DOI
      10.1186/1471-2164-15-645
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals2014

    • Author(s)
      Uesaka M, Nishimura O, Go Y, Nakashima K, Agata K, Imamura T.
    • Journal Title

      BMC Genomics

      Volume: 15 Pages: 35-35

    • DOI
      10.1186/1471-2164-15-35
    • NAID
      120005367807
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The Tif1β-Hp1 system maintains transcriptional integrity of hematopoietic stem cells.2014

    • Author(s)
      Miyagi S, Koide S, Saraya A, Wendt GR, Oshima M, Konuma T, Yamazaki S, Mochizuki-Kashio M, Nakajima-Takagi Y, Wang C, Chiba T, Kitabayashi I, Nakauchi H, Iwama A.
    • Journal Title

      Stem cell reports

      Volume: 2 Pages: 145-52

    • DOI
      10.1016/j.stemcr.2013.12.008
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] An evolutionarily conserved protein CHORD regulates scaling of dendritic arbors with body size2014

    • Author(s)
      Kohei Shimono, Kazuto Fujishima, Takafumi Nomura, Masayoshi Ohashi, Tadao Usui, Mineko Kengaku, Atsushi Toyoda, and Tadashi Uemura.
    • Journal Title

      Scientific Report

      Volume: 4 Pages: 16-21

    • DOI
      10.1038/srep04415
    • NAID
      120005399036
    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Defects in the synthetic pathway prevent DIF-1 mediated stalk lineage specification cascade in the non-differentiating social amoeba, Acytostelium subglobosum.2014

    • Author(s)
      Kurato Mohri, Takashi Hata, Haruhisa Kikuchi, Yoshiteru Oshima and Hideko Urushihara
    • Journal Title

      Biol Open

      Volume: 3

    • DOI
      10.1242/bio.20148359
    • NAID
      120005555602
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular evidence that the genes for dioecism and monoecism in Spinacia oleracea L. are located at different loci in a chromosomal region.2014

    • Author(s)
      K Yamamoto, Y Oda, A Haseda, S Fujito, T Mikami and Y Onodera
    • Journal Title

      Heredity

      Volume: 112(3)

    • DOI
      10.1038/hdy.2013.112
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Methyloceanibacter caenitepidi gen. nov., sp. nov., a novel facultatively methylotrophic bacterium isolated from marine sediments near the hydrothermal vent area.2014

    • Author(s)
      Takeuchi, M., Katayama, T., Yamagishi, T., Hanada, S., Tamaki, H., Kamagata, Y., Oshima, K., Hattori, M., Marumo, K., Nedachi, M., Maeda, H., Suwa, Y., and Sakata, S.
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology.

      Volume: 64 Pages: 462-468

    • DOI
      10.1099/ijs.0.053397-0
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Direct binding of Ataxin-2 to distinct elements in 3’UTRs promotes mRNA stability and protein expression.2014

    • Author(s)
      Yokoshi, M., Li, Q., Yamamoto, M., Okada, H., Suzuki, Y., and Kawahara, Y.
    • Journal Title

      Molecular Cell

      Volume: 55 Pages: 186-198

    • DOI
      10.1016/j.molcel.2014.05.022
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Evolutionary renovation of L/M opsin polymorphism confers a fruit discrimination advantage to ateline New World monkeys.2014

    • Author(s)
      Matsumoto, Y., Hiramatsu, C., Matsushita, Y., Ozawa, N., Ashino, R., Nakata, M., Kasagi, S., Di Fiore, A. Schaffner, C. M., Aureli, F., Melin, A. D. and Kawamura, S.
    • Journal Title

      Molecular Ecology

      Volume: 23 Pages: 1799-1812

    • DOI
      10.1111/mec.12703
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The heterozygote superiority hypothesis for polymorphic color vision is not supported by long-term fitness data from wild Neotropical monkeys.2014

    • Author(s)
      Fedigan, L.M., Melin, A.D., Addicott, J.F. and Kawamura, S.
    • Journal Title

      PLoS One

      Volume: 9

    • DOI
      10.1371/journal.pone.0084872
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The behavioral ecology of color vision: considering fruit conspicuity, detection distance and dietary importance.2014

    • Author(s)
      Melin, A. D., Hiramatsu, C., Parr, N. A., Matsushita, Y., Kawamura, S. and Fedigan, L. M.
    • Journal Title

      International Journal of Primatology

      Volume: 35 Pages: 258-287

    • DOI
      10.1007/s10764-013-9730-8
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Color Vision Variation as Evidenced by Hybrid L/M Opsin Genes in Wild Populations of Trichromatic Alouatta New World Monkeys2014

    • Author(s)
      Matsushita, Y., Oota, H., Welker, B. J., Pavelka, M. S. and Kawamura, S.
    • Journal Title

      International Journal of Primatology,

      Volume: 35 Pages: 71-87

    • DOI
      10.1007/s10764-013-9705-9
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] "Genome-Wide SNP Analysis Reveals Population Structure and Demographic History of the Ryukyu Islanders in the Southern Part fo the Japanese Archipelago."2014

    • Author(s)
      Sato T., Nakagome S., Watanabe C., Yamaguchi K., Kawaguchi A., Koganebuchi K., Haneji K., Yamaguchi T., Hanihara T., Yamamoto K., Ishida H., Mano S., Kimura R., Oota H.
    • Journal Title

      Mol Biol Evol.

      Volume: 31(11) Pages: 2929-2940

    • DOI
      10.1093/molbev/msu230
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Epigenetics as a basis for diagnosis of neurodevelopmental disorders: challenges and opportunities2014

    • Author(s)
      Kubota T, Miyake K, Hariya M, Mochizuki K.
    • Journal Title

      Expert Rev Mol Diagn

      Volume: 14 Pages: 685-697

    • DOI
      10.1586/14737159.2014.925805
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Breakpoint analysis of the recurrent constitutional t(8;22)(q24.13;q11.21) translocation.2014

    • Author(s)
      Mishra D, Kato T, Inagaki H, Kosho T, Wakui K, Kido Y, Sakazume S, Taniguchi-Ikeda M, Morisada N, Iijima K, Fukushima Y, Emanuel BS, Kurahashi H
    • Journal Title

      Mol Cytogenet,

      Volume: 7 Pages: 55-55

    • DOI
      10.1186/s13039-014-0055-x
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Co-option of a photoperiodic growth phase transition system during land plant evolution.2014

    • Author(s)
      Akane Kubota, Shogo Kita, Kimitsune Ishizaki, Ryuichi Nishihama, Katsuyuki T. Yamato, Takayuki Kohchi
    • Journal Title

      Nature Communication

      Volume: 5 : 3668 Pages: 3668-3668

    • DOI
      10.1038/ncomms4668
    • NAID
      120005466589
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Phototropin encoded by a single-copy gene mediates chloroplast photorelocation movement in the liverwort Marchantia polymorpha L.2014

    • Author(s)
      Komatsu, A., Terai, M., Ishizaki, K., Suetsugu, N., Tsuboi, H., Nishihama, R., Yamato, K.T., Wada, M., and Kohchi, T.
    • Journal Title

      Plant Physiology

      Volume: 166 Pages: 411-427

    • DOI
      10.1104/pp.114.245100
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The polycomb component Ring 1B regulates the timed termination of subcerebral projection neuron production during neocortical development.2014

    • Author(s)
      Morimoto-Suzuki,N., Hirabayashi,Y.,Tyssowski, K., Shinga,J., Vidal, M., Koseki, H., and Gotoh, Y
    • Journal Title

      Development.

      Volume: 141

    • DOI
      10.1242/dev.112276
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Study of MHC class II region polymorphism in the Filipino cynomolgus macaque population.2014

    • Author(s)
      Blancher A, Aarnink A, Yamada Y, Tanaka K, Yamanaka H, Shiina T
    • Journal Title

      Immunogenetics

      Volume: 66 Pages: 219-230

    • DOI
      10.1007/s00251-014-0764-7
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Massive Gene Transfer and Extensive RNA Editing of a Symbiotic Dinoflagellate Plastid Genome2014

    • Author(s)
      Mungpakdee, S., Shinzato, C., Takeuchi, T., Kawashima, T., Koyanagi, R., Hisata, K., Tanaka, M., Goto, H., Fujie, M., Lin, S., Satoh, N., and Shoguchi, E.
    • Journal Title

      Genome Biol. Evol.

      Volume: 6 Pages: 1408-1422

    • DOI
      10.1093/gbe/evu109
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Occupancy of Tissue-Specific cis-Regulatory Modules by Otx2 and TLE/Groucho for Embryonic Head Specification2014

    • Author(s)
      Yasuoka Y, Suzuki Y, Takahashi S, Someya H, Sudou N, Haramoto Y, Cho KW, Asashima M, Sugano S, Taira M.
    • Journal Title

      Nat. Commun

      Volume: 5 Pages: 4322-4322

    • DOI
      10.1038/ncomms5322
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates.2014

    • Author(s)
      Nakamura, R., Tsukahara, T., Qu, W., Ichikawa, K., Otsuka, T., Ogoshi, K., Saito, T.L., Matsushima, K., Sugano, S., Hashimoto, S., Suzuki, Y., Morishita, S. & Takeda, H.
    • Journal Title

      Development

      Volume: 141 Pages: 2568-2580

    • DOI
      10.1242/dev.108548
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Occurence of the endangered species Nitellopsis obtusa (Charales, Charophyceae) in western Japan and the genetic differences within and among Japanese populations.2014

    • Author(s)
      Kato, S., Kawai, H., Takimoto, M., Suga, H., Yohda, K., Horiya, K., Higuchi, S., & Sakayama, H.
    • Journal Title

      Phycological Research

      Volume: 62 Pages: 222-227

    • DOI
      10.1111/pre.12057
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Characterization of sexual reproductive processes in Chara braunii (Charales, Charophyceae).2014

    • Author(s)
      Sato, M., Sakayama, H., Sato, M., Ito, M., Sekimoto, H.
    • Journal Title

      Phycological Research

      Volume: 62 Pages: 214-221

    • DOI
      10.1111/pre.12056
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Heterotrimeric G proteins control stem cellproliferation through CLAVATA signaling in Arabidopsis.2014

    • Author(s)
      Ishida, T., Tabata, R., Yamada, M., Aida, M., Mitsumasu, K., Fujiwara, M., Yamaguchi, K., Shigenobu, S., Higuchi, M., Tsuji, H., Shimamoto, K., Hasebe, M., Fukuda, H., Sawa, S.
    • Journal Title

      EMBO reports

      Volume: 15 Pages: 1202-1209

    • DOI
      10.15252/embr.201438660
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Maturation processes and structures of secreted peptides in plants2014

    • Author(s)
      Tabata, R. Sawa, S.
    • Journal Title

      Frontiers in Plant Science

      Volume: 5 Pages: 1-1

    • DOI
      10.3389/fpls.2014.00311
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] CLE6 expression recovers gibberellin deficiency to promote shoot growth in Arabidopsis2014

    • Author(s)
      Bidadi, H.,et al.
    • Journal Title

      Plant Journal

      Volume: In press Pages: 241-252

    • DOI
      10.1111/tpj.12475
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] CLE-CLAVATA1 peptide-receptor signaling module regulates the expansion of plant root systems in a nitrogen-dependent manner.2014

    • Author(s)
      Araya, T.,et al.
    • Journal Title

      Proc. Natl. Acad. Sci.

      Volume: In press

    • DOI
      10.1073/pnas.1319953111
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Light-dependent green gall formation induced by Meloidogyne incognita2014

    • Author(s)
      Nishiyama, H., Nakagami, S., Todaka, A., Arita, T., Ishida, T., Sawa, S.
    • Journal Title

      Nematology

      Volume: 16 Pages: 889-893

    • DOI
      10.1163/15685411-00002814
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Genomic aspects of sporadic neurodegenerative diseases2014

    • Author(s)
      Mitsui J and Tsuji S.
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 452 Pages: 221-225

    • DOI
      10.1016/j.bbrc.2014.07.098
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Design and Experimental Application of a Novel Non-Degenerate Universal Primer Set that Amplifies Prokaryotic 16S rRNA Genes with a Low Possibility to Amplify Eukaryotic rRNA Genes.2014

    • Author(s)
      Mori H, Maruyama F, Kato H, Toyoda A, Dozono A, Ohtsubo Y, Nagata Y, Fujiyama A, Tsuda M Kurokawa K
    • Journal Title

      DNA Res.

      Volume: 21 Pages: 217-227

    • DOI
      10.1093/dnares/dst052
    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Nuclear dynamics of topoisomerase Ⅱβ reflects its catalytic activity that is regulated by binding of RNA to the C-terminal domain.2014

    • Author(s)
      Onoda A, Hosoya O, Sano K, Kiyama K, Kimura H, Kawano S, Furuta R, Miyaji M, Tsutsui K, Tsutsui KM.
    • Journal Title

      Nucleic Acids Res.

      Volume: 42 Pages: 9005-20

    • DOI
      10.1093/nar/gku640
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete genome sequence of Pseudomonas sp.strain TKP isolated from a γ-hexachlorocyclohexane-degrading mixed culture.2014

    • Author(s)
      Ohtsubo Y, Kishida K, Sato T, Tabata M, Kawasumi T, Ogura Y, Hayashi T, Tsuda M, Nagata Y
    • Journal Title

      Genome Announc.

      Volume: 2

    • DOI
      10.1128/genomea.01241-13
    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Complete genome sequence of Pseudomonas aeruginosa MTB-1, isolated from a microbial community enriched by the technical formulation of hexachlorocyclohexane.2014

    • Author(s)
      Ohtsubo, Y., T. Sato, K. Kishida, M. Tabata, Y. Ogura, T. Hayashi, M. Tsuda, and Y. Nagata
    • Journal Title

      Genome Announc.

      Volume: 2

    • DOI
      10.1128/genomea.01130-13
    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Sall1 maintains nephron progenitors and nascent nephrons by acting as both an activator and a repressor.2014

    • Author(s)
      S. Kanda, T. Ohmori, A. Taguchi, K. Kudo, T. Horiuchi, Y. Sato, S. Hino, Y. Suzuki, M. Sander, S. Sugano, M. Nakao, and R. Nishinakamura.
    • Journal Title

      J Am Soc Nephrol

      Volume: 25 Pages: 2584-2595

    • DOI
      10.1681/asn.2013080896
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Sex-specific post-translational regulation of the gamete fusogen GCS1 in the isogamous volvocine alga Gonium pectoral.2014

    • Author(s)
      Kawai-Toyooka H, Mori T, Hamaji T, Suzuki M, Olson BJ, Uemura T, Ueda T, Nakano A, Toyoda A, Fujiyama A, Nozaki H
    • Journal Title

      Eukaryot Cell

      Volume: (in press) Pages: 548-556

    • DOI
      10.1128/ec.00330-13
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Induction of Virulence Gene Expression in Staphylococcus aureus by Pulmonary Surfactant2014

    • Author(s)
      Ishii K, Adachi T, Yasukawa J, Suzuki Y, Hamamoto H, Sekimizu K.
    • Journal Title

      Infect. Immun.

      Volume: 82(4) Pages: 1500-10

    • DOI
      10.1128/iai.01635-13
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] CLOCK-controlled polyphonic regulations of circadian rhythms through canonical and non-canonical E-boxes.2014

    • Author(s)
      Hikari Yoshitane, Haruka Ozaki, Hideki Terajima, Ngoc-Hien Du, Yutaka Suzuki, Taihei Fujimori, Naoki Kosaka, Shigeki Shimba, Sumio Sugano, Toshihisa Takagi, Wataru Iwasaki, and Yoshitaka Fukada.
    • Journal Title

      Mol. Cell. Biol.

      Volume: 34 Pages: 1776-1787

    • DOI
      10.1128/mcb.01465-13
    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Methylome diversification through changes in DNA methyltransferase sequence specificity2014

    • Author(s)
      Yoshikazu Furuta, Hiroe Namba-Fukuyo, Tomoko F. Shibata, Tomoaki Nishiyama, Shuji Shigenobu, Yutaka Suzuki, Sumio Sugano, Mitsuyasu Hasebe, Ichizo Kobayashi
    • Journal Title

      PLoS genetics

      Volume: 10(4)

    • DOI
      10.1371/journal.pgen.1004272
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Novel calmodulin (CALM2) mutations associated with congenital arrhythmia susceptibility.2014

    • Author(s)
      Makita N, Tsuji Y(39人中21番目)et al
    • Journal Title

      Circ Cardiovasc Genet

      Volume: 7 Pages: 466-474

    • DOI
      10.1161/circgenetics.113.000459
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Phytochrome controls alternative splicing to mediate light responses in Arabidopsis.2014

    • Author(s)
      Shikata, H., Hanada, K., Ushijima, T., Nakashima, M., Suzuki, Y. and Matsushita, T.
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 111 Pages: 18781-18786

    • DOI
      10.1073/pnas.1407147112
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] ABCG2 dysfunction causes hyperuricemia due to both renal urate underexcretion and renal urate overload.2014

    • Author(s)
      Matsuo, H. Nakayama, A. Sakiyama, M. et al.
    • Journal Title

      Sci Rep.

      Volume: 4:3755 Pages: 3755-3755

    • DOI
      10.1038/srep03755
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Common dysfunctional variants of ABCG2 have strong impact on hyperuricemia progression than typical environmental risk factors.2014

    • Author(s)
      Nakayama A, et al.
    • Journal Title

      Sci Rep

      Volume: 4 Pages: 5227-5227

    • DOI
      10.1038/srep05227
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Ethnic Differences in ATP-binding Cassette Transporter, Sub-family G, Member 2 (ABCG2/BCRP): Genotype Combinations and Estimated Functions2014

    • Author(s)
      Sakiyama M, et al.
    • Journal Title

      DMPK

      Volume: 29(6) Issue: 6 Pages: 490-2

    • DOI
      10.2133/dmpk.DMPK-14-SC-041
    • NAID
      130004463408
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads2014

    • Author(s)
      R. Kajitani, K. Toshimoto, H. Noguchi, A. Toyoda, Y. Ogura, M. Okuno, M. Yabana, M. Harada, E. Nagayasu, H. Maruyama, Y. Kohara, A. Fujiyama, T. Hayashi and T.Itoh
    • Journal Title

      Genome Res.

      Volume: 24 Pages: 1384-1384

    • DOI
      10.1101/gr.170720.113
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Assessment of helminth biodiversity in wild rats using 18S rDNA based metagenomics.2014

    • Author(s)
      Ryusei Tanaka, Akina Hino, Isheng J. Tsai, Juan Emilio Palomares-Rius1, Ayako Yoshida,Yoshitoshi Ogura, Tetsuya Hayashi, Haruhiko Maruyama, Taisei Kikuchi
    • Journal Title

      PLoS One.

      Volume: 9

    • DOI
      10.1371/journal.pone.0110769
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Karyotype and reproduction mode of the rodent parasite Strongyloides venezuelensis2014

    • Author(s)
      Hino A, Tanaka T, Takaishi M, Fujii Y, Palomares-Rius JE, Hasegawa K, Maruyama H, Kikuchi T
    • Journal Title

      Parasitology

      Volume: 141 Pages: 1736-1745

    • DOI
      10.1017/s0031182014001036
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Genome-wide association study of degenerative bony changes of temporomandibular joint in East Asian populations.2014

    • Author(s)
      Yamaguchi T, (10名省略), Kimura R, Inoue I
    • Journal Title

      Oral Dis.

      Volume: 20 Pages: 409-15

    • DOI
      10.1111/odi.12141
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Functional characterization of flavobacteria thodopsins reveals a unique class of light-driven chloride pump in bacteria.2014

    • Author(s)
      Susumu Yoshizawa, Yohei Kumagai, Hana Kim, Yoshitoshi Ogura, Tetsuya Hayashi, Wataru Iwasaki, Edward F. DeLong, and Kazuhiro Kogure.
    • Journal Title

      Proc. Natl. Acad. Sci. USA.

      Volume: 111 Pages: 6732-6737

    • DOI
      10.1073/pnas.1403051111
    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 遺伝子から見た根寄生植物の生存戦略2014

    • Author(s)
      吉田聡子、若竹崇雅、白須賢
    • Journal Title

      植物の生長調節

      Volume: 49(1)

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Genome-wide analysis of CNV (copy number variation) and their associations with narcolepsy in a Japanese population2014

    • Author(s)
      Yamasaki M, Miyagawa T, Toyoda H, Khor SS, Koike A, Nitta A, Akiyama K, Sasaki T, Honda M, Tokunaga K.
    • Journal Title

      Journal of Human Genetics

      Volume: 59 Pages: 235-240

    • DOI
      10.1038/jhg.2014.13
    • NAID
      40020066447
    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A genome-wide association study for diabetic retinopathy in a Japanese population: potential association with a long intergenic non-coding RNA.2014

    • Author(s)
      Awata T, Yamashita H, Kurihara S, Morita-Ohkubo T, Miyashita Y, Katayama S, Mori K, Yoneya S, Kohda M, Okazaki Y, Maruyama T, Shimada A, Yasuda K, Nishida N, Tokunaga K, and Koike A.
    • Journal Title

      PLoS One

      Volume: 9

    • DOI
      10.1371/journal.pone.0111715
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] CLAST: CUDA implemented large-scale alignment search tool2014

    • Author(s)
      Yano M, Mori H, Akiyama Y, Yamada T, Kurokawa K
    • Journal Title

      BMC Bioinformatics

      Volume: 15 Pages: 406-406

    • DOI
      10.1186/s12859-014-0406-y
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Mutations in ERBB4 That Disrupt The NRG-ErbB4 Pathway Cause Autosomal Dominant Familial ALS Type 192014

    • Author(s)
      Yuji Takahashi, Yoko Fukuda, Jun Yoshimura, Atsushi Toyoda, Kari Kurppa, Hiroyoko Moritoyo, Veronique Belzil, Klaus Elenius, Guy Rouleau, Asao Fujiyama, Shinichi Morishita, Jun Goto, Shoji Tsuji
    • Journal Title

      Neurology

      Volume: 82

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A simple but powerful heuristic method for accelerating k-means clustering of large-scale data in life science2014

    • Author(s)
      Kazuki Ichikawa and Shinichi Morishita
    • Journal Title

      IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

      Volume: (印刷中)

    • DOI
      10.1109/tcbb.2014.2306200
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Whole genome complete resequencing of Bacillus subtilis natto by combining long reads with high-quality short reads.2014

    • Author(s)
      Kamada, M., Hase, S., Sato, K., Toyoda, A., Fujiyama, A., Sakakibara, Y.
    • Journal Title

      PLOS ONE,

      Volume: 9

    • DOI
      10.1371/journal.pone.0109999
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Efficient calculation of exact probability distributions of integer features on RNA secondary structures2014

    • Author(s)
      Mori R, Hamada M, Asai K
    • Journal Title

      BMC Genomics

      Volume: 15

    • DOI
      10.1186/1471-2164-15-s10-s6
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Reference-free prediction of rearrangement breakpoint reads2014

    • Author(s)
      Edward Wijaya, Kana Shimizu, Kiyoshi Asai, Michiaki Hamada
    • Journal Title

      Bioinformatics

      Volume: 30(18) Pages: 2559-2567

    • DOI
      10.1093/bioinformatics/btu360
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes2014

    • Author(s)
      Miyamoto M, Motooka D, Gotoh K, Imai T, Yoshitake K, Goto N, Iida T, Yasunaga T, Horii T, Arakawa K, Kasahara M, Nakamura S.
    • Journal Title

      BMC Genomics

      Volume: 15 Pages: 699-699

    • DOI
      10.1186/1471-2164-15-699
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] ELSI practices in genomic research in East Asia: implications for research collaboration and public participation2014

    • Author(s)
      Yoshizawa G., Ho C. W., Zhu W., Hu C., Syukriani Y., Lee I., Kim H., Tsai D. F., Minari J. and Kato K.
    • Journal Title

      Genome Medicine.

      Volume: 6 Pages: 39-39

    • DOI
      10.1186/gm556
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Ethical considerations of research policy for personal genome analysis: the approach of the Genome Science Project in Japan2014

    • Author(s)
      Minari J, Shirai T and Kato K
    • Journal Title

      Life Sciences, Society and Policy

      Volume: 10 Pages: 4-4

    • DOI
      10.1186/s40504-014-0004-9
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Return of genetic research results: the Japanese experience and its implications for the international debate.2014

    • Author(s)
      Minari J, Chalmers D. and Kato K.
    • Journal Title

      SCRIPTed

      Volume: 11 Pages: 180-192

    • DOI
      10.2966/scrip.110214.180
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The emerging need for family-centric initiatives for obtaining consent in personal genome research.2014

    • Author(s)
      Minari J., Teare H., Mitchell C., Kaye J. and Kato K.
    • Journal Title

      Genome Medicine

      Volume: 6 Pages: 118-118

    • DOI
      10.1186/s13073-014-0118-y
    • NAID
      120005537856
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] パーソナルゲノム時代の研究ガバナンス2014

    • Author(s)
      三成寿作, 加藤和人
    • Journal Title

      医薬ジャーナル

      Volume: 50

    • Related Report
      2014 Annual Research Report
  • [Journal Article] 医療情報の利用に関する政策の20年2014

    • Author(s)
      吉澤剛
    • Journal Title

      医学のあゆみ

      Volume: 251(3)

    • Related Report
      2014 Annual Research Report
  • [Journal Article] ヒトゲノム情報は21世紀の新しい石油となるか?―パーソナルゲノム時代の倫理的・法的・社会的課題2014

    • Author(s)
      山本奈津子
    • Journal Title

      医学のあゆみ

      Volume: 251(3)

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Aberrant transcriptional regulations in cancers: genome, transcriptome and epigenome analysis of lung adenocarcinoma cell lines.2014

    • Author(s)
      Ayako Suzuki , Hideki Makinoshima, Hiroyuki Wakaguri, Hiroyasu Esumi, Sumio Sugano, Takashi Kohno, Katsuya Tsuchihara, Yutaka Suzuki
    • Journal Title

      Nucleic Acids Res

      Volume: 42(22) Pages: 13557-13572

    • DOI
      10.1093/nar/gku885
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] パーソナルゲノム時代の研究ガバナンス2014

    • Author(s)
      三成寿作,加藤和人
    • Journal Title

      医薬ジャーナル

      Volume: 50 Pages: 55-58

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Sex-specific Post-translational Regulation of the Gamete Fusogen GCS1 in the Isogamous Volvocine Alga Gonium pectorale.2014

    • Author(s)
      Kawai-Toyooka H, Mori T, Hamaji T, Suzuki M, Olson BJ, Uemura T, Ueda T, Nakano A, Toyoda A, Fujiyama A, Nozaki H.
    • Journal Title

      Eukaryot Cell.

      Volume: In Press, Mar 14.

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A biochemical landscape of A-to-I RNA editing in the human brain transcriptome.2014

    • Author(s)
      Sakurai, M., Ueda, H., Yano, T., Okada, S., Terajima, H., Mitsuyama, T., Toyoda, A., Fujiyama, A., Kawabata, H. and Suzuki, T.
    • Journal Title

      Genome Res.

      Volume: 24 Pages: 522-534

    • DOI
      10.1101/gr.162537.113
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Molecular epidemiology and clinical   spectrum of hereditary spastic paraplegia in the Japanese population based on comprehensive mutational analyses2014

    • Author(s)
      Ishiura H, Takahashi Y, Hayashi T, Saito K, Furuya H, Watanabe M, Murata M, Suzuki M, Sugiura A, Sawai S, Shibuya K, Ueda N, Ichikawa Y, Kanazawa I, Goto J and Tsuji S
    • Journal Title

      J. Hum. Genet.

      Volume: 59 Pages: 163-172

    • DOI
      10.1038/jhg.2013.139
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Lessons from Genome-Wide Search for Disease-Related Genes with2014

    • Author(s)
      Tokunaga K
    • Journal Title

      Genes (Basel)

      Volume: 5 Pages: 84-96

    • DOI
      10.3390/genes5010084
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome-wide association study of HPV-associated cervical cancer in Japanese women2014

    • Author(s)
      Miura K, Mishima H, Kinoshita A, Hayashida C, Abe S, Tokunaga K, Masuzaki H, Yoshiura KI.
    • Journal Title

      J. Med. Virol.

      Volume: 86 (7) Pages: 1153-1158

    • DOI
      10.1002/jmv.23943
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Lack of genetic association between TREM2 and late-onset Alzheimer’s disease in a Japanese population.2014

    • Author(s)
      Miyashita A, et al.
    • Journal Title

      J Alzheimers Dis

      Volume: 印刷中

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Origin of methane is serpentinite-hosted hydrothermal systems: the CH4-H2-H2O hydrogen isotope systematics of the Hakuba Happo hot spring.2014

    • Author(s)
      Suda, K., Ueno, Y., Yoshizaki, M., Nakamura, H., Kurokawa, K., Nishiyama, E., Yoshino, K., Hongoh, Y., Kawachi, K., Omori, S., Yamada, K., Yoshida, N., Maruyama, S.
    • Journal Title

      Earth Planetary Sci. Lett.

      Volume: 386 Pages: 112-125

    • DOI
      10.1016/j.epsl.2013.11.001
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] A novel small regulatory RNA enhances cell motility in enterohemorrhagic <i>Escherichia coli</i>2014

    • Author(s)
      Sudo N, Soma A, Muto A, Iyoda S, Suh M, Kurihara N, Abe H, Tobe T, Ogura Y, Hayashi T, Kurokawa K,Ohinishi M, Sekine Y
    • Journal Title

      J. Gen. Appl. Microbiol.

      Volume: 60(1) Issue: 1 Pages: 44-50

    • DOI
      10.2323/jgam.60.44
    • NAID
      130004802264
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum.2014

    • Author(s)
      Tajima N, Sato S,Maruyama F,Kurokawa K,Ohta H, Tabata S, Sekine K, Moriyama T, Sato N
    • Journal Title

      J Plant Res.

      Volume: 127 Pages: 389-397

    • DOI
      10.1007/s10265-014-0627-1
    • NAID
      40020051727
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A recurrent de novo FAM111A mutation causes kenny-caffey syndrome type 2.2014

    • Author(s)
      Isojima T, Doi K, Mitsui J, Oda Y, Tokuhiro E, Yasoda A, Yorifuji T, Horikawa R, Yoshimura J, Ishiura H, Morishita S, Tsuji S, and Kitanaka S.
    • Journal Title

      J Bone Miner Res.

      Volume: 29 Pages: 992-8

    • DOI
      10.1002/jbmr.2091
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species2014

    • Author(s)
      Hideki Hirakawa, et al.
    • Journal Title

      DNA Research

      Volume: 21 Pages: 169-181

    • DOI
      10.1093/dnares/dst049
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tetrahedral gray code for visualization of genome information2014

    • Author(s)
      Ichinose N, Yada T, Gotoh O
    • Journal Title

      PLoS One

      Volume: 9(1)

    • DOI
      10.1371/journal.pone.0086133
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ヒトメタゲノムの大規模コホート研究2014

    • Author(s)
      森宙史,山田拓司,黒川顕
    • Journal Title

      生物の科学「遺伝」

      Volume: 67(3) Pages: 279-282

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Reflections on the Cost of "Low-Cost" Whole Genome Sequencing: Framing the Health Policy Debate.2013

    • Author(s)
      Timothy Caulfield, et al.
    • Journal Title

      PLoS Biology

      Volume: 11(11)

    • DOI
      10.1371/journal.pbio.1001699
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ERBB4 mutations that disrupt the neuregulin-ErbB4 pathway cause amyotrophic lateral sclerosis type 19.2013

    • Author(s)
      Takahashi Y, Fukuda Y, Yoshimura J, Toyoda A, (33名省略), Morishita S, Goto J and Tsuji S.
    • Journal Title

      Am J Hum Genet.

      Volume: 93 Pages: 900-5

    • DOI
      10.1016/j.ajhg.2013.09.008
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Coelacanth genomes reveal signatures for evolutionary transition from water to land.2013

    • Author(s)
      Nikaido M, Noguchi, H, Nishihara H, Toyoda A, Suzuki Y, Kajitani R, Suzuki H, Okuno M, Aibara M, Ngatunga BP, Mzighani SI, Kalombo HW, Masengi KW, Tuda J, Nogami S, Maeda R, Iwata M, Abe Y, Fujimura K, Okabe M, Amano T, Maeno A, Shiroishi T, Itoh T, Sugano S, Kohara Y, Fujiyama A, Okada N.
    • Journal Title

      Genome research

      Volume: 23巻10号 Pages: 1740-1748

    • DOI
      10.1101/gr.158105.113
    • NAID
      40020020658
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure.2013

    • Author(s)
      Shoguchi1, E., Shinzato, C., Kawashima, T., Gyoja, F., et al.
    • Journal Title

      Curr Biol.

      Volume: 23 Pages: 1399-1408

    • DOI
      10.1016/j.cub.2013.05.062
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparison of Genomic and Epigenomic Expression in Monozygotic Twins Discordant for Rett Syndrome.2013

    • Author(s)
      Miyake K, Yang C, Minakuchi Y, Ohori K, Soutome M, Hirasawa T, Kazuki Y, Adachi N, Suzuki S, Itoh M, Goto YI, Andoh T, Kurosawa H, Oshimura M, Sasaki M, Toyoda A, Kubota T.
    • Journal Title

      PLoS One.

      Volume: 8(6)

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Lineage-specific expansion of vomeronasal type 2 receptor-like (OlfC) genes in cichlids may contribute to diversification of amino acid detection systems.2013

    • Author(s)
      Nikaido M, Suzuki H, Toyoda A, FujiyamaA, Hagino-Yamagishi K, Kocher TD, Carleton KL, Okada N
    • Journal Title

      Genome Biol Evol.

      Volume: Evol.5 Pages: 711-722

    • DOI
      10.1093/gbe/evt041
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Functionally distinct Gata3/Chd4 complexes coordinately establish Th2 cell identity.2013

    • Author(s)
      Hosokawa H
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: - Pages: 4691-4696

    • DOI
      10.1073/pnas.1220865110
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The comprehensive epigenome map of piRNA clusters2013

    • Author(s)
      .Kawaoka S, Hara K, Shoji K, Kobavashi M、Shimada T, Sugano S, Tomari Y, Suzuki Y, *Katsuma S
    • Journal Title

      Nucleic Acids Res

      Volume: 41(3) Pages: 1581-1590

    • DOI
      10.1093/nar/gks1275
    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota.? ??2013

    • Author(s)
      Koji Atarashi, Takeshi Tanoue, et al.
    • Journal Title

      Nature

      Volume: 500 Pages: 232-236

    • DOI
      10.1038/nature12331
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of ATP1A3 mutations by exome sequencing as the cause of alternating hemiplegia of childhood in Japanese patients.2013

    • Author(s)
      Ishii A, Saito Y, Mitsui J, Ishiura H, Yoshimura J, Arai H, Yamashita S, Kimura S, Oguni H, Morishita S, Tsuji S, Sasaki M, Hirose S.
    • Journal Title

      PLoS ONE

      Volume: 8

    • DOI
      10.1371/journal.pone.0056120
    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mutations of COQ2 in Familial and Sporadic Multiple System Atrophy2013

    • Author(s)
      Mitsui J, et. al.
    • Journal Title

      New Engl J Med

      Volume: 369 Pages: 233-244

    • DOI
      10.1056/nejmoa1212115
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hereditary spastic paraplegia type 43 (SPG43) is caused by mutation in C19ORF12.2013

    • Author(s)
      Landouré G, et al
    • Journal Title

      Human Mutation

      Volume: 34 Pages: 1357-1360

    • DOI
      10.1002/humu.22378
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 東大病院ゲノム医学センターにおける取り組み.2013

    • Author(s)
      三井 純,石浦 浩之,辻 省次.
    • Journal Title

      Brain and Nerve

      Volume: 65 Pages: 247-255

    • Related Report
      2013 Annual Research Report
  • [Journal Article] SORL1 Is Genetically Associated with Late-Onset Alzheimer's Disease in Japanese, Koreans and Caucasians.2013

    • Author(s)
      Miyashita A, Shoji M, Ikeda M, Alzheimer Disease Genetics Consortium
    • Journal Title

      PLoS One.

      Volume: 8

    • DOI
      10.1371/journal.pone.0058618
    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-Wide Association Study of Atypical Psychosis.2013

    • Author(s)
      金沢 徹文 他
    • Journal Title

      Am. J. Med. Genet.

      Volume: 162 Pages: 679-686

    • DOI
      10.1002/ajmg.b.32164
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evidence for shared genetic risk between methamphetamine-induced psychosis and schizophrenia.2013

    • Author(s)
      池田 匡志 他
    • Journal Title

      Neuropsychopharmacology,

      Volume: 38 Pages: 1864-1870

    • DOI
      10.1038/npp.2013.94
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] SORL1 is genetically associated with neuropathologically characterized late-onset Alzheimer’s disease2013

    • Author(s)
      Wen Y, Miyashita A, Kitamura N, Tsukie T, Saito Y, Hatsuta H, Murayama S, et al.
    • Journal Title

      Journal of Alzheimer's Disease

      Volume: 35(2) Pages: 387-387

    • DOI
      10.3233/jad-122395
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Whole-genome sequence of the purple photosynthetic bacterium Rhodovulum sulfidophilum strain W4.2013

    • Author(s)
      Masuda M, Hori K, Maruyama F, Ren S, Sugimoto S, Yamamoto N, Mori H, Yamada T, Sato S, Tabata S, Ohta H, Kurokawa K
    • Journal Title

      Genome Announc.

      Volume: 1(4)

    • DOI
      10.1128/genomea.00577-13
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Updating the Vibrio clades defined by multilocus sequence phylogeny: Proposal of eight new clades, and the description of Vibrio tritonius sp. nov.2013

    • Author(s)
      Sawabe T, Ogura Y, Matsumura Y, Gao F, Amin A, Mino S, Nakagawa S, Sawabe T, Kumar R, Fukui Y, Satomi M, Matsushima R, Thompson F, Gomez-Gil B, Christen R, Maruyama F, Kurokawa K, Hayashi T
    • Journal Title

      Frontiers in Aquatic Microbiol.

      Volume: 4 Pages: 1-14

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Segmental duplications in the silkworm genome.2013

    • Author(s)
      Zhao Q, Zhu Z, Kasahara M, Morishita S, Zhang Z.
    • Journal Title

      BMC Genomics

      Volume: 14(1) Pages: 521-521

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Exome analysis reveals a Japanese family with spinocerebellar ataxia, autosomal recessive 1 without increase in serum alpha-fetoprotein level2013

    • Author(s)
      Ichikawa Y, Ishiura H, Mitsui J, Takahashi Y, Kobayashi S, Takuma H, Kanazawa I, Doi K, Yoshimura J, Morishita S, Goto J, Tsuji S
    • Journal Title

      J Neurological Sciences

      Volume: 331 Pages: 158-160

    • DOI
      10.1016/j.jns.2013.05.018
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Analysis of base-pairing probabilities of RNA molecules involved in protein RNA interactions2013

    • Author(s)
      Junichi Iwakiri, Tomoshi Kameda, Kiyoshi Asai, Michiaki Hamada
    • Journal Title

      Bioinformatics

      Volume: 29 Pages: 2524-2528

    • DOI
      10.1093/bioinformatics/btt453
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Haruka Yonemoto, Kiyoshi Asai, Michiaki Hamada2013

    • Author(s)
      Haruka Yonemoto, Kiyoshi Asai, Michiaki Hamada
    • Journal Title

      Int. J. Mol. Sci.

      Volume: 14 Pages: 6144-6156

    • DOI
      10.3390/ijms14036144
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] PBSIM: PacBio reads simulator--toward accurate genome assembly2013

    • Author(s)
      Yukiteru Ono, Kiyoshi Asai, Michiaki Hamada
    • Journal Title

      Bioinformatics

      Volume: 29 Pages: 119-121

    • DOI
      10.1093/bioinformatics/bts649
    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sequence analysis of the genome of carnation (Dianthus caryophyllus L.)2013

    • Author(s)
      Masafumi Yagi, Shunichi Kosugi, Hideki Hirakawa et al.(他24名)
    • Journal Title

      DNA Res

      Volume: (Epub ahead of print)

    • DOI
      10.1093/dnares/dst053
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data.2013

    • Author(s)
      Nagasaki, H., Mochizuki, T., Kodama, Y., Saruhashi, S., Morizaki, S., Sugawara, H., Ohyanagi, H., Kurata, N., Okubo, K., Takagi, T., Kaminuma, E., Nakamura, Y.
    • Journal Title

      DNA Res.

      Volume: 20 Pages: 383-390

    • DOI
      10.1093/dnares/dst017
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] An extended genovo metagenomic assembler by incorporating paired-end information2013

    • Author(s)
      Afiahayati, Sato K., Sakakibara Y.
    • Journal Title

      PeerJ

      Volume: 1

    • DOI
      10.7717/peerj.196
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of a rifampicin-resistant Bacillus subtilis strain for natto-fermentation showing enhanced exoenzyme production2013

    • Author(s)
      Yuji Kubo
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 115 Issue: 6 Pages: 654-657

    • DOI
      10.1016/j.jbiosc.2012.12.012
    • NAID
      110009614950
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Screening for candidate genes involved in the production of mouse subventricular zone proliferative cells and an estimation of their changes in evolutionary pressure during primate evolution.2013

    • Author(s)
      Tabata H, Hachiya T, Nagata K, Sakakibara Y, Nakajima K
    • Journal Title

      Front. Neuroanat

      Volume: 7 Pages: 24-24

    • DOI
      10.3389/fnana.2013.00024
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Identification of an intact ParaHox cluster with temporal colinearity but residual spatial colinearity in the hemichordate Ptychodera flava.2013

    • Author(s)
      Freeman R, Ikuta T, Wu M, Koyanagi R, Kawashima T, Tagawa K, Humphreys T, Fang GC, Fujiyama A, Saiga H, Lowe C, Worley K, Jenkins J, Schmutz J, Kirschner M, Rokhsar D, Satoh N, Gerhart J.
    • Journal Title

      Curr. Biol.

      Volume: 22 Pages: 129-129

    • DOI
      10.1016/j.cub.2012.08.052
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Exome sequencing identifies novel rheumatoid arthritis-susceptible variants in the BTNL22013

    • Author(s)
      Mitsunaga S, Hosomichi K, Okudaira Y, Nakaoka H, Kunii N, Suzuki Y, Kuwana M, Sato S, Kaneko Y, Homma Y, Kashiwase K, Azuma F, Kulski JK, Inoue I, Inoko H.
    • Journal Title

      Journal of Human Genetics

      Volume: 58 Pages: 210-215

    • DOI
      10.1038/jhg.2013.2
    • NAID
      40019642228
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ATF6α/β-mediated Adjustment of ER Chaperone Levels Is Essential for Development of the Notochord in Medaka Fish.2013

    • Author(s)
      Ishikawa T
    • Journal Title

      Mol Biol Cell.

      Volume: 8.2

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial and plastid genomes of the colonial green alga Gonium pectorale give insights into the origins of organelle DNA architecture within the volvocales.2013

    • Author(s)
      Takashi Hamaji
    • Journal Title

      PLoS ON

      Volume: 8

    • DOI
      10.1371/journal.pone.0057177
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Complete Genome Sequence of a Propionibacterium acnes Isolate from a Sarcoidosis Patient2013

    • Author(s)
      Minegishi K, Aikawa C, Furukawa A, Watanabe T, Nakano T, Ogura Y, Ohtsubo Y, Kurokawa K, Hayashi T, Maruyama F, Nakagawa I, Eishi Y
    • Journal Title

      Genome Announcment

      Volume: 1 Pages: 1-1

    • DOI
      10.1128/genomea.00016-12
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High-Resolution Mapping of In vivo Genomic Transcription Factor Binding Sites Using In situ DNase I Footprinting and ChIP-seq2013

    • Author(s)
      Onuma Chumsakul
    • Journal Title

      DNA Research

      Volume: 20

    • DOI
      10.1093/dnares/dst013
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transcriptomic analysis of four developmental stages of Strongyloides venezuelensis.2013

    • Author(s)
      Nagayasu E, Ogura Y, Itoh T, Yoshida A, Chakraborty G, Hayashi T, Maruyama H
    • Journal Title

      Parasitol Int.

      Volume: 62(1) Pages: 57-65

    • DOI
      10.1016/j.parint.2012.09.006
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] miRNA-target prediction based on transcriptional regulation2013

    • Author(s)
      Fujiwara,T., Yada,T.
    • Journal Title

      BMC Genomics

      Volume: 14(Suppl.2)

    • DOI
      10.1186/1471-2164-14-s2-s3
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Finding Protein-Coding Genes through Human Polymorphisms.2013

    • Author(s)
      Wijaya E
    • Journal Title

      PLoS ONE

      Volume: 8(1)

    • DOI
      10.1371/journal.pone.0054210
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] パーソナルゲノム研究の倫理的課題2013

    • Author(s)
      加藤和人
    • Journal Title

      BRAIN and NERVE

      Volume: 65 Pages: 267-272

    • Related Report
      2012 Annual Research Report
  • [Journal Article] 「ヒトゲノム・遺伝子解析研究に関する倫理指針」の改定をめぐる批判的談話分析2013

    • Author(s)
      野村安以
    • Journal Title

      年報科学・技術・社会

      Volume: 22

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] CSF1R mutations identified in three families with autosomal dominantly inherited leukoencephalopathy.2012

    • Author(s)
      Mitsui J, Matsukawa T, Ishiura H, Higasa K, Yoshimura J, Saito TL, Ahsan B, Takahashi Y, Goto J, Iwata A, Niimi Y, Riku Y, Goto Y, Mano K, Yoshida M, Morishita S, Tsuji S.
    • Journal Title

      Amer. J. Med. Genet. Neuropsych. Genet.

      Volume: 159B(8) Pages: 951-7

    • DOI
      10.1002/ajmg.b.32100
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Association between six classical HLA loci and rheumatoid arthritis: a comprehensive analysis.2012

    • Author(s)
      S. Mitsunaga, Y. Suzuki, M. Kuwana, S. Sato, Y. Kaneko, Y. Homma, A. Narita, K. Kashiwase, Y. Okudaira, I. Inoue, J. K. Kulski and H. Inoko
    • Journal Title

      Tissue Antigen

      Volume: Vol.80 Pages: 16-25

    • DOI
      10.1111/j.1399-0039.2012.01872.x
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Next-generation sequencing: impact of exome sequencing in characterizing Mendelian disorders.2012

    • Author(s)
      Rabbani B, et al.
    • Journal Title

      J Hum Genet

      Volume: 57 Pages: 621-632

    • DOI
      10.1038/jhg.2012.91
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Meta-analysis identifies common variants associated with body mass index in east Asians.2012

    • Author(s)
      Wen W, et al
    • Journal Title

      Nat. Genet.

      Volume: 44 Pages: 1007-1015

    • DOI
      10.1038/ng.1087
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ezh2 augments leukemogenecity by reinforcing differentiation blockage in acute myeloid leukemia.2012

    • Author(s)
      Tanaka S
    • Journal Title

      Blood.

      Volume: 120 Pages: 1107-1117

    • DOI
      10.1182/blood-2011-11-394932
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genomic-wide association studies of tuberculosis in Asians identify distinct at-risk locus for young tuberculosis.2012

    • Author(s)
      Mahasirimongkol S, Yanai H, Mushiroda T, Promphittayarat W, Wattanapokayakit S, Promjai J, Yuliwulandari R, Wichukchinda N, Yowang A, Yamada N, Kantipong P, Takahashi A, Kubo M, Sawanpanyalert P, Kamatani N, Nakamura Y, Tokunaga K
    • Journal Title

      J. Hum. Genet.

      Volume: 57巻(6) Pages: 363-367

    • DOI
      10.1038/jhg.2012.35
    • NAID
      10030808016
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-Wide Association Study Confirxming Association of HLA-DP with Protection against Chronic Hepatitis B and Viral Clearance in Japanese and Korean.2012

    • Author(s)
      Nishida N, Asahina Y, Mizokami M et al
    • Journal Title

      PLoS ONE

      Volume: 7

    • DOI
      10.1371/journal.pone.0039175
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Common variants on chromosome 9p21 are associated with normal tension glaucoma.2012

    • Author(s)
      Takamoto M
    • Journal Title

      PLoS ONE

      Volume: 7

    • DOI
      10.1371/journal.pone.0040107
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in Japanese.2012

    • Author(s)
      Nakamura M
    • Journal Title

      Am. J. Hum. Genet.

      Volume: 91 Pages: 721-728

    • DOI
      10.1016/j.ajhg.2012.08.010
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Meta-analysis of genome-wide association studies for Panic disorder in the Japanese population. Transl.2012

    • Author(s)
      Otowa T 1/32, Umekage T 17/32, Sasaki T 32/32
    • Journal Title

      Psychiatry

      Volume: 13;2 Pages: 1-8

    • DOI
      10.1038/tp.2012.89
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A homozygous mutation of C12orf65 causes spastic paraplegia with optic atrophy and neuropathy (SPG55).2012

    • Author(s)
      Shimazaki H, Takiyama Y, Ishiura H, Sakai C, Matsushima Y, Hatakeyama H, Honda J, Sakoe K, Naoi T, Namekawa M, Fukuda Y, Takahashi Y, Goto J, Tsuji S, Goto Y, Nakano I
    • Journal Title

      Journal of medical genetics

      Volume: 49(12) Pages: 777-784

    • DOI
      10.1136/jmedgenet-2012-101212
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns.2012

    • Author(s)
      Qu W, Hashimoto S, Shimada A, Nakatani Y, Ichikawa K, Saito TL, Ogoshi K, Matsushima K, Suzuki Y, Sugano S, Takeda H, Morishita S.
    • Journal Title

      Genome Research

      Volume: 22 Pages: 1419-1425

    • DOI
      10.1101/gr.140236.112
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Altered expression of testis-specific genes, piRNAs, and transposons in the silkworm ovary masculinized by a W chromosome mutation.2012

    • Author(s)
      Hara Kahori
    • Journal Title

      BMC Genomics.

      Volume: (in press) Pages: 119-119

    • DOI
      10.1186/1471-2164-13-119
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A role for transcription from a piRNA cluster in de novo piRNA production. RNA.2012

    • Author(s)
      Kawaoka S
    • Journal Title

      RNA.

      Volume: 18(2) Pages: 265-273

    • DOI
      10.1261/rna.029777.111
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-wide determination of RNA stability reveals hundreds of short-lived non-coding transcripts in mammals.2012

    • Author(s)
      Tani, H.
    • Journal Title

      Genome Res.

      Volume: (in press) Pages: 947-956

    • DOI
      10.1101/gr.130559.111
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Central Coupler for Recombination Initiation Linking Chromosome Architecture to S Phase Checkpoint.2012

    • Author(s)
      三好知一郎
    • Journal Title

      Mol. Cell

      Volume: 14 Pages: 722-733

    • DOI
      10.1016/j.molcel.2012.06.023
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of hundreds of novel UPF1 target transcripts by direct determining whole transcriptome stability in mammalian cells2012

    • Author(s)
      H.Tani
    • Journal Title

      RNA Biol.

      Volume: 9 Pages: 1370-1379

    • DOI
      10.4161/rna.22360
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 同じ病原菌種内での菌株の違いをゲノムからみる:病原性大腸菌を例として2012

    • Author(s)
      林哲也
    • Journal Title

      Neuroinfection

      Volume: 17(1) Pages: 26-34

    • Related Report
      2012 Annual Research Report
  • [Journal Article] 腸管出血性大腸菌における病原性のゲノム進化.2012

    • Author(s)
      小椋義俊
    • Journal Title

      感染・炎症・免疫

      Volume: 42 Pages: 182-195

    • Related Report
      2012 Annual Research Report
  • [Journal Article] MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads2012

    • Author(s)
      Namiki, T., Hachiya, T., Tanaka, H., and Sakakibara, Y.
    • Journal Title

      Nucleic Acids Research

      Volume: 40

    • DOI
      10.1093/nar/gks678
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds2012

    • Author(s)
      Nakamura, M., Hachiya, T., Saito, Y., Sato, K., and Sakakibara, Y.
    • Journal Title

      BMC Bioinformatics

      Volume: 13

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DAFS : simultaneous aligning and folding of RNA sequences via dual decomposition2012

    • Author(s)
      Kengo Sato, Yuki Kato, Tatsuya Akutsu, Kiyoshi Asai, Yasubumi Sakakibara
    • Journal Title

      Bioinformatics

      Volume: 28 Pages: 3218-3224

    • DOI
      10.1093/bioinformatics/bts612
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] GHOSTM: A GPU-accelerated homology search tool for metagenomics2012

    • Author(s)
      Suzuki S, Ishida T, Kurokawa K, Akiyama Y
    • Journal Title

      PLoS one

      Volume: 7 Pages: 1-8

    • DOI
      10.1371/journal.pone.0036060
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A classification of bioinformatics algorithms from the viewpoint of maximizing expected accuracy (MEA).2012

    • Author(s)
      Michiaki Hamada, Kiyoshi Asai
    • Journal Title

      J. Comput Biol

      Volume: 19 Pages: 532-549

    • DOI
      10.1089/cmb.2011.0197
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A mostly traditional approach improves alignment of bisulfite-converted DNA.2012

    • Author(s)
      Martin C Frith
    • Journal Title

      Nucleic Acids Res

      Volume: 40(13)

    • DOI
      10.1093/nar/gks275
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Shape-based alignment of genomic landscapes in multi-scale resolution.2012

    • Author(s)
      Hiroki Ashida
    • Journal Title

      Nucleic Acids Res

      Volume: 40(14) Pages: 6435-6448

    • DOI
      10.1093/nar/gks354
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ELSI 2.0 for Genomics and Society2012

    • Author(s)
      Jane Kaye
    • Journal Title

      SCIENCE

      Volume: 336 Pages: 673-674

    • DOI
      10.1126/science.1218015
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Epigenetic regulation of monoallelic gene expression2012

    • Author(s)
      Shiba,H.
    • Journal Title

      Development Growth and Differentiation

      Volume: 54 Pages: 120-128

    • DOI
      10.1111/j.1440-169x.2011.01317.x
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Imprinted DNA methylation reprogramming during early mouse embryogenesis at the Gpr1-Zdbf2 locus is linked to long cis-intergenic transcription2012

    • Author(s)
      Kobayashi H, Sakurai T, Sato S, Nakabayashi K, Hata K, Kono T
    • Journal Title

      FEBS Lett.

      Volume: 23;586(6) Pages: 827-833

    • DOI
      10.1016/j.febslet.2012.01.059
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks.2012

    • Author(s)
      Kobayashi H, Sakurai T, Imai M, Takahashi N, Fukuda A, Yayoi O, Sato S, Nakabayashi K, Hata K, Sotomaru Y, Suzuki Y, Kono T
    • Journal Title

      PLoS Genet.

      Volume: 8(1)

    • DOI
      10.1371/journal.pgen.1002440
    • NAID
      120005300482
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Association between six classical HLA loci and rheumatoid arthritis : a comprehensive analysis2012

    • Author(s)
      Mitsunaga S, et al.
    • Journal Title

      Tissue Antigens

      Volume: (In press)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Meta-analysis of genome-wide association studies identifies multiple novel loci associated with rheumatoid arthritis in the Japanese population.2012

    • Author(s)
      Okada Y, Terao C, Ikari K, Kochi Y, Ohmura K, Suzuki A, Kawaguchi T, Stahl EA, Kurreeman FA, Nishida N, Ohmiya H, Myouzen K, Takahashi M, Sawada T, Nishioka Y, Yukioka M, Matsubara T, Wakitani S, Teshima R, Tohma S, Takasugi K, Shimada K, Murasawa A, Honjo S, Matsuo K, Tanaka H, Tajima K, Suzuki T, Iwamoto T, Kawamura Y, Tanii H, Okazaki Y, Sasaki T, Gregersen PK, Padyukov L, Worthington J, Siminovitch KA, Lathrop M, Taniguchi A, Takahashi A, Tokunaga K, Kubo M, Nakamura Y, Kamatani N, Mimori T, Plenge RM, Yamanaka H, Momohara S, Yamada R, Matsuda F, Yamamoto K.
    • Journal Title

      Nat. Genet.

      Volume: (in press) Pages: 511-516

    • DOI
      10.1038/ng.2231
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transformations for the compression of FASTQ quality scores of next-generation sequencing data2012

    • Author(s)
      Raymond Wan, Vo Ngoc Anh, Kiyoshi Asai
    • Journal Title

      Bioinformatics

      Volume: 28 Pages: 628-635

    • DOI
      10.1093/bioinformatics/btr689
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RecountDB : a database of mapped and count corrected transcribed sequences2012

    • Author(s)
      Edward Wijaya, Martin C Frith, Kiyoshi Asai, Paul Horton
    • Journal Title

      Nucleic Acids Research

      Volume: 40

    • DOI
      10.1093/nar/gkr1172
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] SAMSCOPE : An OpenGL based real-time interactive scale-free SAM viewer2012

    • Author(s)
      Popendorf, K. and Sakakibara, Y.
    • Journal Title

      Bioinformatics

      Volume: 28 Pages: 1276-1277

    • DOI
      10.1093/bioinformatics/bts122
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] COPICAT : A software system for predicting interactions between proteins and chemical compounds2012

    • Author(s)
      Sakakibara, Y., Hachiya, T., Uchida, M., Nagamine, N., Sugawara, Y., Yokota, M., Nakamura, M., Popendorf, K., Komori, T., Sato, K.
    • Journal Title

      Bioinformatics

      Volume: 28 Pages: 745-746

    • DOI
      10.1093/bioinformatics/bts031
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Large-scale motif discovery using DNA Gray code and equiprobabile oligomers2012

    • Author(s)
      Ichinose,N., Yada,T.,Gotoh,O.
    • Journal Title

      Bioinformatics

      Volume: 28 Pages: 25-31

    • DOI
      10.1093/bioinformatics/btr606
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of SIRH12, a retrotransposon-derived gene specific to marsupial mammals2011

    • Author(s)
      Ono R., et.al.
    • Journal Title

      DNA Res.

      Volume: 18(4) Pages: 211-219

    • DOI
      10.1093/dnares/dsr012
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Linear regression models predicting strength of transcriptional activity of promoters2011

    • Author(s)
      Yada T, Yoshida K, Morita M, Taniguchi T, Irie T, Suzuki Y
    • Journal Title

      Genome Inform.

      Volume: 25 Pages: 53-60

    • NAID
      130004567843
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-wide analysis reveals unique regulation of transcription of Th2-specific genes by GATA3.2011

    • Author(s)
      Horiuchi, S., Onodera, A., Hosokawa, H., Watanabe, Y., Tanaka, T., Sugano, S., SuzukiY. Nakayama, T
    • Journal Title

      J.Immunol

      Volume: 186 Pages: 6378-6389

    • DOI
      10.4049/jimmunol.1100179
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A systems genetics approach provides a bridge from discovered genetic variants to biological pathways in rheumatoid arthritis.2011

    • Author(s)
      Nakaoka Hirofumi; Cui Tailin; Tajima Atsushi, et al
    • Journal Title

      PLoS ONE

      Volume: 6:9

    • DOI
      10.1371/journal.pone.0025389
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Exact break point of a 50kb deletion 8kb centromeric of the HLA-A locus with HLA-A^*24:02: the same deletion observed in other A^*24 alleles and A^*23:01 allele2011

    • Author(s)
      Mitsunaga Shigeki; Okudaira Yuko; Kunii Nanae, et al
    • Journal Title

      Immunogenetics.

      Volume: 63:8 Pages: 467-474

    • DOI
      10.1007/s00251-011-0521-0
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-wide association study identified ITPA/DDRGK1 variants reflecting thrombocytopenia in pegylated interferon and ribavirin therapy for chronic hepatitis C2011

    • Author(s)
      Tanaka Y, et al.
    • Journal Title

      Hum.Mol.Genet.

      Volume: 20 Pages: 3507-3516

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A genome-wide CNV association study on panic disorder in a Japanese population.2011

    • Author(s)
      Kawamura Y., et al
    • Journal Title

      J.Hum.Genet.

      Volume: 56 Pages: 852-6

    • DOI
      10.1038/jhg.2011.117
    • NAID
      10030661967
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-wide profiling of DNA methylation in human cancer cells2011

    • Author(s)
      Ogoshi K, et al.
    • Journal Title

      Genomics

      Volume: 98 Pages: 280-287

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sequence-specific error profile of Illumina Sequencers2011

    • Author(s)
      Kensuke Nakamura, 他
    • Journal Title

      Nucleic Acids Research

      Volume: 39

    • DOI
      10.1093/nar/gkr344
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enterotypes of the human gut microbiome2011

    • Author(s)
      Arumugam, M., et al.
    • Journal Title

      Nature

      Volume: 473 Pages: 174-180

    • DOI
      10.1038/nature09944
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The lifestyle of the segmented filamentous bacterium: a nonculturable gut-associated immunostimulating microbe inferred by whole-genome sequencing2011

    • Author(s)
      Kuwahara T, et al
    • Journal Title

      DNA Res.

      Volume: 18 Pages: 291-303

    • DOI
      10.1093/dnares/dsr022
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transcription factor GreA contributes to resolve promoter proximal pausing of RNA polymerase in B.subtilis cells2011

    • Author(s)
      Kusuya, Y., et al.
    • Journal Title

      Journal of Bacteriology

      Volume: 193 Pages: 3090-3099

    • DOI
      10.1128/jb.00086-11
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Probabilistic alignments with quality scores : an application to short-read mapping toward accurate SNP/indel detection2011

    • Author(s)
      Michiaki Hamada, Edward Wijaya, Martin C Frith, Kiyoshi Asai
    • Journal Title

      Bioinformatics

      Volume: 27 Pages: 3085-3092

    • DOI
      10.1093/bioinformatics/btr537
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A detailed investigation of accessibilities around target sites of siRNAs and miRNAs2011

    • Author(s)
      Hisanori Kiryu, Goro Terai, Osamu Imamura, Hiroyuki Yoneyama, Kenji Suzuki, Kiyoshi Asai
    • Journal Title

      Bioinformatics

      Volume: 27 Pages: 1788-1797

    • DOI
      10.1093/bioinformatics/btr276
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Improved measurements of RNA structure conservation with generalized centroid estimators2011

    • Author(s)
      Okada, Y., Saito, Y., Sato, K., Sakakibara, Y.
    • Journal Title

      Frontiers in Genetics

      Volume: 2 Pages: 54-54

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Predicting promoter activities of primary human DNA sequences2011

    • Author(s)
      Irie,T., Park,S.-J., Yamashita,R., Seki,M., Yada,T., Sugano,S., Nakai,K., Suzuki,Y.
    • Journal Title

      Nucl.Acids Res.

      Volume: 39

    • DOI
      10.1093/nar/gkr173
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Predicting promoter activities of primary human DNA sequences2011

    • Author(s)
      Irie T, Park SJ, Yamashita R, Seki M, Yada T, Sugano S, Nakai K, Suzuki Y
    • Journal Title

      Nucleic Acids Res.

      Volume: 39(11)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Particular human leukocyte antigen alleles are associated with biochemical traits in the Japanese population2011

    • Author(s)
      Mitsunaga S, et al
    • Journal Title

      Human Immunology

      Volume: 72 Pages: 566-570

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Exome resequencing combined with linkage analysis identifies novel PTH1R variants in a primary failure of tooth eruption in Japanese2011

    • Author(s)
      Yamaguchi T, et al
    • Journal Title

      Journal of Bone and Mineral Research

      Volume: 26 Pages: 1655-1661

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Generalized centroid estimators in bioinformatics2011

    • Author(s)
      Michiaki Hamada, Hisanori Kiryu, Wataru Iwasaki, Kiyoshi Asai
    • Journal Title

      PLoS One

      Volume: 6

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Improving the accuracy of predicting secondary structure for aligned RNA sequences2011

    • Author(s)
      Michiaki Hamada, Kengo Sato, Kiyoshi Asai
    • Journal Title

      Nucleic Acids Research

      Volume: 39 Pages: 393-402

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures2011

    • Author(s)
      Saito, Y., Sato, K., Sakakibara, Y.
    • Journal Title

      BMC Bioinformatics

      Volume: 12

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Science Communication : Significance for Genome-Based Personalized Medicine-A View from the Asia-Pacific2010

    • Author(s)
      Kazuto Kato, Kei Kano, Tetsuya Shirai
    • Journal Title

      Current Pharmacogenomics and Personalized Medicine

      Volume: 8 Pages: 92-96

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] STAT6-mediated displacement of polycomb by trithorax complex establishes long-term maintenance of GATA3 expression in T helper type 2 cells2010

    • Author(s)
      Onodera A, Yamashita M, Endo Y, Kuwahara M, Tofukuji S, Hosokawa H, Kanai A, Suzuki Y, Nakayama T
    • Journal Title

      J.Exp.Med.

      Volume: 207 Pages: 2493-2506

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Common variants in the ATP2B1 gene are associated with susceptibility to hypertension : The Japanese Millennium Genome Project2010

    • Author(s)
      Tabara Y, et al
    • Journal Title

      Hypertension

      Volume: 56 Pages: 973-980

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ITPA gene variant protects against anemia induced by pegylated interferon-α andribavirin therapy for Japanese patients with chronic hepatitis C2010

    • Author(s)
      Sakamoto N, et al
    • Journal Title

      Hepatol.Res.

      Volume: 40 Pages: 1063-1071

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Meta-analysis of genome-wide association scans for genetic susceptibility to endometriosis in Japanese population2010

    • Author(s)
      Adachi S, et al
    • Journal Title

      J.Hum.Genet.

      Volume: 55 Pages: 816-821

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] TRPM7 is not associated with amyotrophic lateral sclerosis-parkinsonism dementiacomplex in the Kii peninsula of Japan2010

    • Author(s)
      Hara K., et al
    • Journal Title

      Am J Med Genet B Neuropsychiatr Genet

      Volume: 153B Pages: 310-313

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Accelerating Path-free XML Queries in RDBMS2010

    • Author(s)
      Wu H, Saito TL, Morishita S
    • Journal Title

      IPSJ Online Transaction

      Volume: 3 Pages: 206-217

    • NAID
      130000649560
    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cost-effective sequencing of full-length cDNA clones powered by a de novo-reference hybrid assembly2010

    • Author(s)
      Kuroshu RM, et al
    • Journal Title

      PLoS One

      Volume: 7

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] VITCOMIC : visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences2010

    • Author(s)
      Mori, H., Maruyama, F., Kurokawa, K.
    • Journal Title

      BMC Bioinformatics

      Volume: 11 Pages: 332-332

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome comparison and phylogenetic analysis of Orientia tsutsugamushi strains2010

    • Author(s)
      Nakayama, K., et al
    • Journal Title

      DNA Research

      Volume: 17 Pages: 281-291

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RNA polymerase trafficking in Bacillus subtilis cells2010

    • Author(s)
      Ishikawa, S., et al
    • Journal Title

      Journal of Bacteriology

      Volume: 192 Pages: 5778-5787

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Prediction of RNA secondary structure by maximizing pseudo-expected accuracy2010

    • Author(s)
      Michiaki Hamada, Kengo Sato, Kiyoshi Asai
    • Journal Title

      BMC Bioinformatics

      Volume: 11 Pages: 586-586

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Enhancer landscape dynamics and the role of IRF8 in mononuclear phagocyte development.2015

    • Author(s)
      Kurotaki D, Nakabayashi J, Nishiyama A, Sasaki H, Kaneko N, Koizumi S, Ozato K, Suzuki Y, Tamura T
    • Organizer
      55th American Society of Hematology Annual Meeting and Exposition
    • Place of Presentation
      Orlando, USA
    • Year and Date
      2015-12-06
    • Related Report
      2015 Annual Research Report
  • [Presentation] R-Spondin1 promotes Paneth cell growth, maintains intestinal microbial ecology, and ameliorates graft-versus-host disease2015

    • Author(s)
      Hayase E, Hashimoto D, Nakamura K, Ogura Y, Hayashi T, Kurokawa K, Ayabe T, and Teshima T.
    • Organizer
      57th ASH Annual Meeting
    • Place of Presentation
      Orlando, FL, USA
    • Year and Date
      2015-12-06
    • Related Report
      2015 Annual Research Report
  • [Presentation] The identification of pistil-specific genes by global transcriptome analyses in tomato (Solanum lycopersicum).2015

    • Author(s)
      Ezura K, Ji-Seong K, Mori K, Kuhara S, Suzuki Y, Ariizumi T and Ezura H.
    • Organizer
      The 12th Solanaceae Conference
    • Place of Presentation
      Bordeaux, France
    • Year and Date
      2015-10-25
    • Related Report
      2015 Annual Research Report
  • [Presentation] LAMPLINK: An additional function for PLINK to detect statistically significant genetic interactions2015

    • Author(s)
      Terada A, Tsuda K, Sese J
    • Organizer
      American Society of Human Genetics
    • Place of Presentation
      米国ボルチモア
    • Year and Date
      2015-10-06
    • Related Report
      2015 Annual Research Report
  • [Presentation] A novel causative gene for permanent tooth agenesis.2015

    • Author(s)
      Yamaguchi T, Hosomichim K, Kim YI, Yano K, Haga S, Katayama K, Park SB, Inoue I, Maki K.
    • Organizer
      8th International Orthodontic Congress
    • Place of Presentation
      London, UK
    • Year and Date
      2015-09-27
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A highly resolved phylogenetic tree of Trichosporonales species based on multiple gene sequence analysis.2015

    • Author(s)
      Masako Takashima, Ri-ichiroh Manabe, Wataru Iwasaki, Akira Ohyama, Moriya Ohkuma, and Takashi Sugita.
    • Organizer
      32nd International Specialized Symposium on Yeasts
    • Place of Presentation
      Hotel Gio Centro Congressi, Perugia, Italy
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The CpMinus1 gene, specifically localized on the mating-type minus genome, is responsible for the sex determination of heterothallic Closterium peracerosum-strigosum-littorale complex2015

    • Author(s)
      Komiya, A., Abe, J., Kawai, J., Suzuki, Y., Ootsuki, R., Tsuchikane, Y., Nishiyama, T., Sekimoto, H.
    • Organizer
      6th European Phycological Congress
    • Place of Presentation
      London, England
    • Year and Date
      2015-08-25
    • Related Report
      2015 Annual Research Report
  • [Presentation] Adaptive evolution and ever metamorphosing DNA methylation systems2015

    • Author(s)
      Hirokazu Yano, Yoshikazu Furuta, Zobaidul M. Alam, Emiko Rimbara, Hiroe Namba-Fukuyo, Tomoko Shibata, Tomoaki Nishiyama, Shuji Shigenobu, Mitsuyasu Hasebe, Yutaka Suzuki, Sumio Sugano, Keigo Shibayama, Ichizo Kobayashi
    • Organizer
      7th NEB Meeting on DNA Restriction and Modification
    • Place of Presentation
      グダンスク、ポーランド
    • Year and Date
      2015-08-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] MiFish, a set of universal primers for metabarcoding environmental DNA from fishes: Detection of >230 species from aquarium tanks and coral reefs in the subtropical western North Pacific.2015

    • Author(s)
      Masaki Miya, Yukuto Sato, Tsukasa Fukunaga, Tetsuya Sado, Jan Yde Poulsen, Keiichi Sato, Toshifumi Minamoto, Satoshi Yamamoto, Hiroki Yamanaka, Hitoshi Araki, Michio Kondoh, and Wataru Iwasaki.
    • Organizer
      6th International Barcode of Life Conference
    • Place of Presentation
      University of Guelph, Canada
    • Year and Date
      2015-08-19
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Network of DNA methyltransferase behind the adaptive phenotype in Helicobacteri pylori.2015

    • Author(s)
      Hirokazu Yano, Zobaidul M. Alam, Emiko Rimbara, Yoshikazu Furuta, Yutaka Suzuki, Sumio Sugano, Keigo Shibayama, Ichizo Kobayashi
    • Organizer
      Gordon Research Conference, Microbial Population Biology
    • Place of Presentation
      Andover, NH, USA
    • Year and Date
      2015-07-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] Genetic analysis of natural variations for cold habituation in C. elegans2015

    • Author(s)
      Misaki Okahata, Akane Ohta, Yohei Minakuchi, Atsushi Toyoda, Atsushi Kuhara
    • Organizer
      20th C. elegans International meeting
    • Place of Presentation
      Los Angels, USA
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The mechanisms of Copper acquisition and detoxification in Aspergillus fumigatus.2015

    • Author(s)
      Kusuya Y, Kurokawa K, Takahashi H.
    • Organizer
      ISHAM 2015
    • Place of Presentation
      Melbourne, Australia
    • Year and Date
      2015-05-04
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Methylome analysis of the 14q32.2 imprinted region in patients with imprinting defects on human chromosome 14.2015

    • Author(s)
      Masayo Kagami, Takahide Hayano, Kazuyoshi Hosomichi, Kazuhiko Nakabayashi, Maki Fukami, Tsutomu Ogata, Ituro Inoue.
    • Organizer
      2nd EUROPEAN IMPRINTING DISORDER SCHOOL COST Action BM1208
    • Place of Presentation
      Paris, France
    • Year and Date
      2015-05-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] HLA解析ツール2015

    • Author(s)
      長崎英樹
    • Organizer
      Galaxy Workshop Tokyo 2015
    • Place of Presentation
      東京大学 先端科学技術研究センター
    • Year and Date
      2015-04-28
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Visualizing translocation dynamics and nascent 1 transcript errors in paused RNA polymerases in vivo.2015

    • Author(s)
      Imashimizu M, Takahashi H, Oshima T, McIntosh C, Bubunenko M, Court DL, Kashlev M.
    • Organizer
      NCI Symposium on Chromosome Biology
    • Place of Presentation
      Bethesda, USA
    • Year and Date
      2015-04-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] アオサ藻綱ヒラアオノリのゲノム解読と雌雄ゲノムの比較による性決定領域の探索2015

    • Author(s)
      山﨑誠和, 鈴木亮吾, 市原健介, 豊田敦, 桑野和可, 鈴木穣, 河野重行
    • Organizer
      日本藻類学会第39回大会
    • Place of Presentation
      九州大学
    • Year and Date
      2015-03-20 – 2015-03-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] 全ゲノム変異解析のためのパイプラインの構築2015

    • Author(s)
      石井 公太郎,平野 智也,風間 裕介,浜田 道昭,小野 幸輝,阿部 知子
    • Organizer
      日本育種学会 第127回講演会
    • Place of Presentation
      玉川大学
    • Year and Date
      2015-03-20
    • Related Report
      2014 Annual Research Report
  • [Presentation] The Construction of Genome Annotation Database for Liverwort Marchantia polymorpha2015

    • Author(s)
      長崎英樹、石崎公庸、大和勝幸、河内孝之、中村保一
    • Organizer
      第56回日本植物生理学会年会
    • Place of Presentation
      東京農業大学
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] 納豆菌ゲノムのPacBioシークエンシングと高精度配列の再決定.2015

    • Author(s)
      鎌田真由美,長谷純崇,木村啓太郎,佐藤健吾,豊田敦,藤山秋佐夫,榊原康文
    • Organizer
      第8回日本ゲノム微生物学会年会
    • Place of Presentation
      東京農業大学
    • Year and Date
      2015-03-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] 「Gef-seqに対応したマッピングプログラムおよびGUIの開発」2015

    • Author(s)
      松本秀太・中村建介
    • Organizer
      第9回 日本ゲノム微生物学会年会
    • Place of Presentation
      神戸大学
    • Year and Date
      2015-03-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] The Construction of Genome Annotation Database for Liverwort Marchantia polymorpha2015

    • Author(s)
      Yasukazu Nakamura, Hideki Nagasaki, Naoko Iida
    • Organizer
      Expanding Frontiers of Genome Science II
    • Place of Presentation
      一橋講堂
    • Year and Date
      2015-01-20 – 2015-01-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] Pipeline for whole-genome analysis of heavy-ion-induced mutants2015

    • Author(s)
      Kotaro Ishii, Tomonari Hirano, Yusuke Kazama, Michiaki Hamada, Yukiteru Ono, Tomoko Abe
    • Organizer
      International Symposium on Genome Science
    • Place of Presentation
      東京 一橋講堂
    • Year and Date
      2015-01-20 – 2015-01-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] Next generation sequencing data and its bioinformatics analysis dissect genomic regulatory elements2015

    • Author(s)
      Tetsushi Yada, Takuma Irie, Takeaki Taniguchi, Yutaka Suzuki
    • Organizer
      International Symposium on Genome Science
    • Place of Presentation
      東京 一橋講堂
    • Year and Date
      2015-01-20 – 2015-01-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] 定量生物学と情報生物学2015

    • Author(s)
      岩崎渉
    • Organizer
      定量生物学の会第七回年会
    • Place of Presentation
      九州大学筑紫キャンパス(春日)
    • Year and Date
      2015-01-11
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] The Chara braunii Genome2015

    • Author(s)
      Tomoaki Nishiyama, Atsushi Toyoda, Yutaka Suzuki, Asao Fujiyama, Stefan A. Rensing, Hidetoshi Sakayama
    • Organizer
      Plant and Animal Genome XXIII Conference, 2015
    • Place of Presentation
      San Diego, CA
    • Year and Date
      2015-01-10 – 2015-01-14
    • Related Report
      2014 Annual Research Report
  • [Presentation] The Chara braunii Genome Sheds Light on the Origin of Land Plants2015

    • Author(s)
      Hidetoshi Sakayama, Atsushi Toyoda, Yutaka Suzuki, Asao Fujiyama, Stefan A. Rensing, Tomoaki Nishiyama
    • Organizer
      Plant and Animal Genome XXIII Conference, 2015
    • Place of Presentation
      San Diego, CA
    • Year and Date
      2015-01-10 – 2015-01-14
    • Related Report
      2014 Annual Research Report
  • [Presentation] The Construction of Genome Annotation Database for Liverwort Marchantia polymorpha2015

    • Author(s)
      Hideki Nagasaki Kimitsune Ishizaki Katsuyuki T. Yamato Takayuki Kohchi Yasukazu Nakamura
    • Organizer
      International Plant & Animal Genome XXIII
    • Place of Presentation
      San Diego, CA, USA
    • Year and Date
      2015-01-10 – 2015-01-14
    • Related Report
      2014 Annual Research Report
  • [Presentation] DDBJ Read Annotation Pipeline の紹介と実習2014

    • Author(s)
      長崎英樹
    • Organizer
      第30回 DDBJing 講習会 in 東京
    • Place of Presentation
      独立行政法人 科学技術振興機構 東京本部
    • Year and Date
      2014-12-18
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] The Construction of Genome Annotation Database for the Liverwort Marchantia polymorpha2014

    • Author(s)
      Hideki Nagasaki, Naoko Iida, Yasukazu Nakamura
    • Organizer
      Marchantia Workshop 2014
    • Place of Presentation
      神戸大学
    • Year and Date
      2014-12-08 – 2014-12-10
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Asian Microbiome Project: 次世代シーケンサーを用いたアジア人腸内細菌叢のプロファイル化2014

    • Author(s)
      東佳那子、百田理恵、山本麻寿紗、林 哲也、小椋義俊、黒川 顕、豊田敦、加藤和人、AMP study group、園元謙二、渡辺幸一、Lee Yuan Kun、中山二郎
    • Organizer
      日本生物工学会 第21回九州支部熊本大会
    • Place of Presentation
      熊本大学
    • Year and Date
      2014-12-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] マウス長期継代系統を用いた生殖系列突然変異率の閾値とその影響2014

    • Author(s)
      内村有邦, 樋口真弓, 水口洋平, 西野穣, 豊田敦, 藤山秋佐夫, 八木健
    • Organizer
      日本環境変異原学会第43回大会
    • Place of Presentation
      一橋大学一橋講堂
    • Year and Date
      2014-12-04 – 2014-12-05
    • Related Report
      2014 Annual Research Report
  • [Presentation] 放射線耐性を示すクマムシの新規タンパク質S261によるDNA損傷の抑制2014

    • Author(s)
      橋本 拓磨, 斎藤 裕樹, 尾山 大明, 秦 裕子, 榎本 敦, 宮川 清, 桑原 宏和, 堀川 大樹, 豊田 敦, 片山 俊明, 荒川 和晴, 藤山 秋佐夫, 久保 健雄, 國枝 武和
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 有殻アメーバ Paulinella chromatophora のゲノム解析2014

    • Author(s)
      松尾 充啓, 潟端 篤, 水口 洋平, 野口 英樹, 豊田 敦, 藤山 秋佐夫, 鈴木 穣, 佐藤 壮一郎, 松崎 素道, 中山 卓郎, 神川 龍馬, 野村 真未, 壁谷 如洋, 宮城島 進也, 稲垣 祐司, 石田 健一郎, 小保方 潤一
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] The Construction of Genome Annotation Database for Liverwort ゼニゴケゲノムアノテーションデータベースの構築2014

    • Author(s)
      長崎英樹、石崎公庸、大和勝幸、河内孝之、中村保一
    • Organizer
      第37回 日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 次世代シークエンサーによる変異プロモーターの網羅的解析2014

    • Author(s)
      入江拓磨, 門城拓, 劉エイ, 関真秀, 菅野純夫, 矢田哲士, 鈴木穰
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      横浜, 日本
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] ゲノムおよび健康関連データの責任ある共有のためのフレームワークの作成2014

    • Author(s)
      加藤和人
    • Organizer
      日本人類遺伝学会第59回大会
    • Place of Presentation
      東京
    • Year and Date
      2014-11-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] 個人ゲノム情報の取り扱いに関する倫理的、法的課題2014

    • Author(s)
      山本奈津子、川嶋実苗、藤田卓仙、鈴木正朝
    • Organizer
      第59回日本人類遺伝学会 第21回日本遺伝子診療学会 合同大会
    • Place of Presentation
      東京
    • Year and Date
      2014-11-19 – 2014-11-22
    • Related Report
      2014 Annual Research Report
  • [Presentation] Roles of bacteriophages in the emergence and evolution of enterohemorrhagic Escherichia coli.2014

    • Author(s)
      Hayashi T.
    • Organizer
      第62回日本ウイルス学会学術集会
    • Place of Presentation
      横浜市
    • Year and Date
      2014-11-10
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] ビッグデータ時代における医療等情報の取り扱い方針に関する検討2014

    • Author(s)
      藤田卓仙、山本奈津子、川嶋実苗、鈴木正朝
    • Organizer
      第34回医療情報学連合大会
    • Place of Presentation
      千葉
    • Year and Date
      2014-11-06 – 2014-11-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] クリニカルシーケンス応用を目指したHLA領域のゲノム解析2014

    • Author(s)
      細道一善
    • Organizer
      Roche Scientific Symposium 2014 先端医療研究におけるターゲットゲノム解析
    • Place of Presentation
      JPタワー ホール&カンファレンス(東京)
    • Year and Date
      2014-11-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 生殖補助医療規制の構築における「子どもを持ちたいという欲望」2014

    • Author(s)
      小門穂
    • Organizer
      日本生命倫理学会
    • Place of Presentation
      浜松
    • Year and Date
      2014-10-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] PCR-based method for complete HLA gene sequencing and capture-based method for entire HLA region sequencing2014

    • Author(s)
      Hosomichi K, Inoue I.
    • Organizer
      64th Annual Meeting of The American Society of Human Genetics (ASHG 2014)
    • Place of Presentation
      an Diego Convention Center (San Diego, California)
    • Year and Date
      2014-10-18 – 2014-10-22
    • Related Report
      2014 Annual Research Report
  • [Presentation] Analysis of ethical and social issues of large scale genome cohort/biobanking projects in Japan.2014

    • Author(s)
      Jusaku Minari, Yoshikazu Hanabusa, Soichiro Toda, Fuji Nagami and Kazuto Kato.
    • Organizer
      The 64th American Society of Human Genetics (ASHG) Annual Meeting.
    • Place of Presentation
      サンディエゴ(アメリカ)
    • Year and Date
      2014-10-18 – 2014-10-22
    • Related Report
      2014 Annual Research Report
  • [Presentation] 病原細菌のゲノム解析.2014

    • Author(s)
      林哲也
    • Organizer
      Infection and Immunity Research Symposium V
    • Place of Presentation
      福岡市
    • Year and Date
      2014-10-17
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] CLOCKによる古典的・非古典的E-boxを介した概日時計の"多声的"制御2014

    • Author(s)
      Hikari Yoshitane, Haruka Ozaki, Hideki Terajima, Ngoc-Hien Du, Yutaka Suzuki, Taihei Fujimori, Naoki Kosaka, Shigeki Shimba, Sumio Sugano, Toshihisa Takagi, Wataru Iwasaki, and Yoshitaka Fukada.
    • Organizer
      日本バイオインフォマティクス学会2014年年会・第3回生命医薬情報学連合大会
    • Place of Presentation
      仙台国際センター(仙台)
    • Year and Date
      2014-10-03
    • Related Report
      2014 Annual Research Report
  • [Presentation] 微生物ゲノム研究、この13年間を振り返る(未来開拓、ゲノム特定、ゲノム支援を経験して)2014

    • Author(s)
      小椋義俊
    • Organizer
      第8回日本ゲノム微生物学会若手の会研究会
    • Place of Presentation
      静岡市
    • Year and Date
      2014-09-28
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Fundamental bottlenecks in big-data biology2014

    • Author(s)
      岩崎渉
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター(札幌)
    • Year and Date
      2014-09-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Local Package Manager―Database of genome analysis tools with installation procedures2014

    • Author(s)
      Masahiro Kasahara
    • Organizer
      Genome Informatics
    • Place of Presentation
      Churchill College, Cambridge, UK
    • Year and Date
      2014-09-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] 長期継代マウス系統を用いた突然変異率の推定と新しい遺伝学2014

    • Author(s)
      内村有邦, 樋口真弓, 水口洋平, 西野穣, 豊田敦, 藤山秋佐夫, 三浦郁生, 若菜茂晴, 八木健
    • Organizer
      日本遺伝学会第86回大会
    • Place of Presentation
      長浜バイオ大学
    • Year and Date
      2014-09-17 – 2014-09-19
    • Related Report
      2014 Annual Research Report
  • [Presentation] ゲノム大規模データを解析する-転写制御領域の解読と設計-2014

    • Author(s)
      矢田哲士
    • Organizer
      新生命科学分野開拓とスーパーコンピューター「京」
    • Place of Presentation
      福岡, 日本
    • Year and Date
      2014-09-16
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] シャジクモゲノムにみる陸上植物の制御因子ホモログ2014

    • Author(s)
      西山智明, 豊田敦, 鈴木穣, 藤山秋佐夫, 坂山英俊
    • Organizer
      日本植物学会第78回大会
    • Place of Presentation
      明治大学
    • Year and Date
      2014-09-12 – 2014-09-14
    • Related Report
      2014 Annual Research Report
  • [Presentation] DDBJ Read Annotation Pipeline の紹介と実習(RNA-Seq配列のde novoアセンブリを中心に)2014

    • Author(s)
      長崎英樹
    • Organizer
      AJACS十勝
    • Place of Presentation
      帯広畜産大学
    • Year and Date
      2014-09-12
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] People's opinion toward informed consent/assent of children participating birth cohort study in Japan.2014

    • Author(s)
      Izumi Ishiyama, Zentaro Yamagata, Jusaku Minari, Go Yoshizawa, Kaori Muto and Kazuto Kato
    • Organizer
      British Sociological Association Medical Sociology Group 46th Annual Conference 2014
    • Place of Presentation
      バーミンガム (イギリス)
    • Year and Date
      2014-09-10 – 2014-09-12
    • Related Report
      2014 Annual Research Report
  • [Presentation] バイオインフォマティクスから時空間解析へ2014

    • Author(s)
      岩崎渉
    • Organizer
      日本学術会議学術フォーラム「生命情報ビッグデータ時代における新しい生命科学」
    • Place of Presentation
      日本学術会議講堂(東京)
    • Year and Date
      2014-08-29
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Ethical, legal and social issues of genetic and genomic medicine: a focus on East Asian situations2014

    • Author(s)
      Go Yoshizawa
    • Organizer
      Seminar on Biobanking and Ethical, Legal & Social Issues in Genetic and Genomic Medicine,
    • Place of Presentation
      University Sains Malaysia
    • Year and Date
      2014-08-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Initiating a biobank infrastructures and regulations: Japan experiences2014

    • Author(s)
      Go Yoshizawa
    • Organizer
      Seminar on Biobanking and Ethical, Legal & Social Issues in Genetic and Genomic Medicine
    • Place of Presentation
      University Sains Malaysia
    • Year and Date
      2014-08-26
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] (円卓会議で議論に参加)2014

    • Author(s)
      Kazuto Kato
    • Organizer
      Workshop on Data Sharing Between International Consortia
    • Place of Presentation
      ジュネーブ(スイス)
    • Year and Date
      2014-06-03 – 2014-06-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] The research policy regarding disclosure of genetic research results: a historical perspective in Japan.2014

    • Author(s)
      Jusaku Minari and Kazuto Kato.
    • Organizer
      Europian Society of Human Genetics (ESHG) 2014 Annual Meeting
    • Place of Presentation
      ミラノ(イタリア)
    • Year and Date
      2014-05-31 – 2014-06-04
    • Related Report
      2014 Annual Research Report
  • [Presentation] Recent situation about rules of sharing, reuse and circulation of personal genome data in Japan2014

    • Author(s)
      Natsuko Yamamoto
    • Organizer
      Europian Society of Human Genetics (ESHG) 2014 Annual Meeting
    • Place of Presentation
      ミラノ(イタリア)
    • Year and Date
      2014-05-31 – 2014-06-04
    • Related Report
      2014 Annual Research Report
  • [Presentation] Incorporation of Long-Read Technologies into Hybrid-de novo Genome Sequencing Strategy: An Assessment on PacBio and Moleculo Read2014

    • Author(s)
      Asao Fujiyama, Masahiro Kasahara, Atsushi Toyoda
    • Organizer
      PLANT & ANIMAL GENOME ASIA 2014
    • Place of Presentation
      SINGAPORE
    • Year and Date
      2014-05-19 – 2014-05-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] Comments for Panel#3: Big Data, Small Data, Shared Data2014

    • Author(s)
      Kazuto Kato
    • Organizer
      Ethics at the Crossroads: Where Public Health, Genomics, Data and Translational Science Meet
    • Place of Presentation
      インディアナポリス(アメリカ)
    • Year and Date
      2014-05-07
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] (円卓会議で議論に参加)2014

    • Author(s)
      Kazuto Kato
    • Organizer
      The Indianapolis ELSI 2.0 Meeting
    • Place of Presentation
      インディアナポリス(アメリカ)
    • Year and Date
      2014-05-06
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] (円卓会議で議論に参加)2014

    • Author(s)
      Kazuto Kato
    • Organizer
      International Code of Conduct for Genomic and Clinical Date Sharing
    • Place of Presentation
      リ(フランス)
    • Year and Date
      2014-04-02
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] “New Developments of Bioethics Governance System in Japan – An Overview”2014

    • Author(s)
      位田隆一
    • Organizer
      Kyoto International Workshop on Bioethics Governance 2014
    • Place of Presentation
      京都市(同志社大学)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Genome Sequencing of the Charophycean Green Alga, Chara braunii2014

    • Author(s)
      Tomoaki Nishiyama, Atsushi Toyoda, Yutaka Suzuki, Asao Fujiyama, Hidetoshi Sakayama
    • Organizer
      Plant and Animal Genome XXII Conference, 2014
    • Place of Presentation
      San Diego, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNA replication errors that fuel genetic and phenotypic diversities in mammals2014

    • Author(s)
      Arikuni Uchimura, Mayumi Higuchi, Yohei Minakuchi, Atsushi Toyoda, Asao Fujiyama, Ikuo Miura, Shigeharu Wakana, Takeshi Yagi
    • Organizer
      国際シンポジウム "Germline Mutagenesis and Biodiversification”
    • Place of Presentation
      九州大学(病院キャンパス) 総合研究棟1階 セミナー室105
    • Related Report
      2013 Annual Research Report
  • [Presentation] シャジクモのゲノム解読2014

    • Author(s)
      西山智明, 豊田敦, 鈴木穣, 藤山秋佐夫, 坂山英俊
    • Organizer
      植物分類学会
    • Place of Presentation
      熊本
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヒラアオノリ配偶子の一過的形質転換系による葉緑体とミトコンドリアの可視化とその動態2014

    • Author(s)
      鈴木亮吾,伊藤寛,尾関海,余哲,山崎誠和,豊田敦,桑野和可,河野重行
    • Organizer
      日本藻類学会第38回大会
    • Place of Presentation
      東邦大学理学部
    • Related Report
      2013 Annual Research Report
  • [Presentation] 陸上植物に近縁な緑色藻類シャジクモのゲノム解読2014

    • Author(s)
      西山智明, 豊田敦, 鈴木穣, 藤山秋佐夫, 坂山英俊
    • Organizer
      第55回日本植物生理学会年会
    • Place of Presentation
      富山大学 五福キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヒメミカヅキモの-型細胞特異的遺伝子CpMinus1の解析2014

    • Author(s)
      小宮あゆみ、阿部淳、川井絢子、鈴木穣、豊田敦、藤山秋佐夫、大槻涼、土金勇樹、西山智明、関本弘之
    • Organizer
      第55回日本植物生理学会年会
    • Place of Presentation
      富山大学 五福キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] 土壌微生物の移植メタゲノム2014

    • Author(s)
      加藤広海, 森宙史, 丸山史人, 豊田敦, 大坪嘉行, 永田裕二, 藤山秋佐夫, 黒川顕, 津田雅孝
    • Organizer
      第8回 日本ゲノム微生物学会年会
    • Place of Presentation
      東京農業大学 世田谷キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] Extensive phylogenomics revealed a clonal expansion of EHEC O26 in Japan.2014

    • Author(s)
      Y. Ogura, T. Hayashi
    • Organizer
      第87回日本細菌学会総会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] On the OBDD Representation of deBruijn Graphs2014

    • Author(s)
      Guochen Zhao, Yosuke Aizawa,Anish M. S. Shrestha, Satoshi Tayu, Shuichi Ueno
    • Organizer
      2014年電子情報通信学会総合大会
    • Place of Presentation
      新潟大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] Liverwort Genome Analysis Using DDBJ Pipeline and Construction of the Database Annotated by the Research Communities (ポスター)2014

    • Author(s)
      Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
    • Organizer
      International Plant & Animal Genome XXII
    • Place of Presentation
      サンディエゴ、米国
    • Related Report
      2013 Annual Research Report
  • [Presentation] Liverwort Genome Analysis and Construction of the Genome Annotation Database: ゼニゴケゲノム解析とゲノムアノテーションデータベースの構築 (ポスター)2014

    • Author(s)
      Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
    • Organizer
      第55回 日本植物生理学会年会
    • Place of Presentation
      富山大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] Deciphering Regulatory Code Underlying Promoter Sequences2014

    • Author(s)
      Yada T
    • Organizer
      The 2nd BMIRC International Symposium on Advances in Bioinformatics and Medical Engineering
    • Place of Presentation
      Center of Iizuka Research and Development, Fukuoka
    • Related Report
      2013 Annual Research Report
  • [Presentation] プロモーター配列の合理的な設計に挑む2014

    • Author(s)
      矢田哲士
    • Organizer
      情報処理学会第37回バイオ情報学研究会
    • Place of Presentation
      九州工業大学, 福岡
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 転写因子の結合と転写の関係を明らかにする試み2014

    • Author(s)
      矢田哲士
    • Organizer
      新学術領域研究「転写サイクル」第2回トレーニングワークショップ
    • Place of Presentation
      九州工業大学, 福岡
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 大規模比較ゲノム解析が明らかにするプロテオロドプシンを持つ海洋細菌のゲノム進化2014

    • Author(s)
      熊谷洋平,吉澤晋,木暮一啓,岩崎渉
    • Organizer
      第8回日本ゲノム微生物学会年会
    • Place of Presentation
      東京農業大学世田谷キャンパス(東京)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 包括的同意について2013

    • Author(s)
      位田隆一
    • Organizer
      日本医師会 生命倫理懇談会
    • Place of Presentation
      東京
    • Year and Date
      2013-03-21
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 第二・第三世代の配列決定技術の現状2013

    • Author(s)
      豊田敦
    • Organizer
      第86回日本細菌学会ワークショップ「使ってみよう次世代シーケンサー」
    • Place of Presentation
      千葉
    • Year and Date
      2013-03-19
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 歯周病原菌Prevotella intermedia臨床分離株OMA14の全ゲノム配列決定2013

    • Author(s)
      内藤真理子
    • Organizer
      第86回日本細菌学会総会
    • Place of Presentation
      千葉
    • Year and Date
      2013-03-18
    • Related Report
      2012 Annual Research Report
  • [Presentation] ウシ趾乳頭腫症由来株Treponema phagedenisとヒト由来株の比較ゲノム解析2013

    • Author(s)
      後藤恭宏
    • Organizer
      第86回日本細菌学会総会
    • Place of Presentation
      千葉
    • Year and Date
      2013-03-18
    • Related Report
      2012 Annual Research Report
  • [Presentation] 新規下痢原性病原菌Escherichia albertiiのゲノム解析2013

    • Author(s)
      大岡唯祐
    • Organizer
      第86回日本細菌学会総会
    • Place of Presentation
      千葉
    • Year and Date
      2013-03-18
    • Related Report
      2012 Annual Research Report
  • [Presentation] PSC meets NGS -examining ELSI of “conventional” genomics research in the context of the PSC research2013

    • Author(s)
      Ken Okada
    • Organizer
      CiRA Int'l Symposium 2013
    • Place of Presentation
      京都
    • Year and Date
      2013-03-11
    • Related Report
      2012 Annual Research Report
  • [Presentation] ウシ趾乳頭腫症病変部から分離されたTreponema phagedenisのゲノム解析2013

    • Author(s)
      後藤恭宏
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜市
    • Year and Date
      2013-03-08
    • Related Report
      2012 Annual Research Report
  • [Presentation] Escherichia属の新菌種E. albertiiのゲノム解析2013

    • Author(s)
      大岡唯祐
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜市
    • Year and Date
      2013-03-08
    • Related Report
      2012 Annual Research Report
  • [Presentation] 細胞内DNase I footprinting:次世代シーケンサによる高解像度の転写因子結合部位決定2013

    • Author(s)
      Onuma Chumsakul
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜市
    • Year and Date
      2013-03-08
    • Related Report
      2012 Annual Research Report
  • [Presentation] Issues for sharing cells and data in stem cell research- Lessons from human genome research -2013

    • Author(s)
      Kazuto Kato
    • Organizer
      UK-Japan Workshop on Stem Cells: Building a Better Environment for Application
    • Place of Presentation
      京都
    • Year and Date
      2013-03-06
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Basic Structure of Ethics Governance of Biobank2013

    • Author(s)
      Ryuichi Ida
    • Organizer
      World Medical Association Expert Conference on the Revision of the Declaration of Helsinki
    • Place of Presentation
      東京
    • Year and Date
      2013-02-28
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 疾患感受性と薬剤応答性2013

    • Author(s)
      徳永勝士
    • Organizer
      平成24年度 次世代医学セミナー・シンポジウム「ダイナミックなゲノム - 遺伝子解析の最前線 - 」
    • Place of Presentation
      福島
    • Year and Date
      2013-02-28
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Detecting Significant Short Tandem Repeats in Personal Genomes2013

    • Author(s)
      Koichiro Doi
    • Organizer
      AGBT 2013
    • Place of Presentation
      Florida, USA
    • Year and Date
      2013-02-21
    • Related Report
      2012 Annual Research Report
  • [Presentation] Liverwort Genome Analysis using DDBJ Pipeline and Construction of the Genome Annotation Database2013

    • Author(s)
      長崎 英樹
    • Organizer
      International Plant Animal Genome XXI
    • Place of Presentation
      San Diego, CA, USA
    • Year and Date
      2013-01-12
    • Related Report
      2012 Annual Research Report
  • [Presentation] Genome Analysis of Vibrio harveyi Strain S20: Detection and genome feature of the 3rd replicon.2013

    • Author(s)
      Amin A.K.M.R.
    • Organizer
      International Symposium on Genome Sciene “Expanding Frontiers of Genome Science”
    • Place of Presentation
      東京
    • Year and Date
      2013-01-09
    • Related Report
      2012 Annual Research Report
  • [Presentation] Toward the creating marine microbial cell factory for biofuel production.2013

    • Author(s)
      Sawabe T
    • Organizer
      International Symposium on Genome Sciene “Expanding Frontiers of Genome Science”
    • Place of Presentation
      東京
    • Year and Date
      2013-01-09
    • Related Report
      2012 Annual Research Report
  • [Presentation] Comments, Society Section2013

    • Author(s)
      Kazuto Kato
    • Organizer
      International Workshop: Exploring the unique social/ethical and health systems challenges of low cost whole genome sequencing
    • Place of Presentation
      モントリオール(カナダ)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] A brief introduction of Japanese genome research projects and ways to facilitate ELSI 2.0 accelerator activities2013

    • Author(s)
      Kazuto Kato
    • Organizer
      P3G/CGP/ELSI 2.0 Workshop
    • Place of Presentation
      モントリオール(カナダ)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Return of genetic research results in Japan: Policy and practice2013

    • Author(s)
      Kazuto Kato and Jusaku Minari
    • Organizer
      Returning Genetic Results in Biobanks: Opening an International Dialogue
    • Place of Presentation
      Brocher Foundation(スイス)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Ethical issues of sharing personal genome data through public databases2013

    • Author(s)
      三成寿作, 加藤和人
    • Organizer
      日本人類遺伝学会第58回大会
    • Place of Presentation
      宮城県仙台市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Research policy of the Genome Science Project in Japan2013

    • Author(s)
      Minari J and Kato K
    • Organizer
      The 63rd American Society of Human Genetics (ASHG) Annual Meeting
    • Place of Presentation
      Boston, US
    • Related Report
      2013 Annual Research Report
  • [Presentation] A historical overview and a reflection on bioethical and ELSI activities for basic researches in human genetics and genomics in Japan2013

    • Author(s)
      N. Yamamoto, K. Kato
    • Organizer
      American Society of Human Genetics (ASHG) 2013 Annual Meeting
    • Place of Presentation
      ボストン(米国)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Personalised Medicine and Human Rights in Asian Context2013

    • Author(s)
      位田隆一
    • Organizer
      International Bioethics Committee (IBC) 20th Session, UNESCO.
    • Place of Presentation
      韓国・ソウル市(Yonsei University)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 「ゲノム指針改正と疫学研究・臨床研究両指針の見直し―検討作業の動向―」2013

    • Author(s)
      位田隆一
    • Organizer
      第20回日本遺伝子診療学会大会イブニングセミナー
    • Place of Presentation
      浜松市(アクトシティ浜松コングレスセンター
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] ヨコヅナクマムシにおける新規ミトコンドリアタンパク質の同定2013

    • Author(s)
      田中冴、秦裕子、尾山大明、豊田敦、片山俊明、荒川和晴、藤山秋佐夫、久保健雄、國枝武和
    • Organizer
      極限環境生物学会
    • Place of Presentation
      明治大学生田キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヨコヅナクマムシにおける新規ミトコンドリアタンパク質の同定2013

    • Author(s)
      田中冴、秦裕子、尾山大明、豊田敦、片山俊明、荒川和晴、藤山秋佐夫、久保健雄、國枝武和
    • Organizer
      細胞を創る研究会
    • Place of Presentation
      鶴岡メタボロームキャンパス レクチャーホール 鶴岡市先端研究産業支援センター
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヨコヅナクマムシの新規クロマチンタンパク質S261による DNA 断片化の抑制2013

    • Author(s)
      橋本拓磨、斎藤裕樹、尾山大明、秦裕子、桑原宏和、堀川大樹、豊田敦、片山俊明、荒川和晴、藤山秋佐夫、久保健雄、國枝武和
    • Organizer
      極限環境生物学会
    • Place of Presentation
      明治大学生田キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] 乾眠能力をもつヨコヅナクマムシにおける新規ミトコンドリアタンパク質の同定2013

    • Author(s)
      S. Tanaka, H. Kozuka-Hata, A. Toyoda, T. Katayama, K. Arakawa, A. Fujiyama, M.Oyama, T. Kubo and T. Kunieda
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2013 Annual Research Report
  • [Presentation] 高い放射線耐性を示すヨコヅナクマムシの新規クロマチンタンパク質S261の同定と解析2013

    • Author(s)
      橋本拓磨、斎藤裕樹、尾山大明、秦裕子、桑原宏和、堀川大樹、豊田敦、片山俊明、荒川和晴、藤山秋佐夫、久保健雄、國枝武和
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2013 Annual Research Report
  • [Presentation] ポリプテルスにおける補体C4,B因子遺伝子ゲノム領域の構造解析2013

    • Author(s)
      呉谷文、藤戸尚子、豊田敦、藤山秋佐夫、野中勝
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2013 Annual Research Report
  • [Presentation] Molecular mechanisms controlling size of neuronal dendritic arbors2013

    • Author(s)
      K. Shimono, T. Nomura, T. Usui, H. Komai, A. Toyoda, T. Uemura
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2013 Annual Research Report
  • [Presentation] Identification of novel mitochondrial proteins from an anhydrobiotic tardigrade2013

    • Author(s)
      S. Tanaka, A. Toyoda, T. Katayama, K. Arakawa, A. Fujiyama, T. Kubo and T. Kunieda
    • Organizer
      DynaMito2013, the 4th International Symposium on Dynamics of Mitochondria
    • Place of Presentation
      Okinawa
    • Related Report
      2013 Annual Research Report
  • [Presentation] ゼブラフィッシュ近交系IM系統の遺伝的評価2013

    • Author(s)
      新屋みのり、中谷明弘、豊田敦、藤山秋佐夫、酒井則良
    • Organizer
      日本遺伝学会第85回大会
    • Place of Presentation
      慶應義塾大学 日吉キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] 高い突然変異率が後世代の哺乳類集団に及ぼす影響2013

    • Author(s)
      内村有邦、樋口真弓、豊田敦、藤山秋佐夫、三浦郁生、若菜茂晴、八木健
    • Organizer
      日本遺伝学会第85回大会
    • Place of Presentation
      慶應義塾大学 日吉キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] 陸上植物に近縁な藻類シャジクモのゲノム解読2013

    • Author(s)
      西山智明,豊田敦, 鈴木穣, 藤山秋佐夫, 坂山英俊
    • Organizer
      植物学会
    • Place of Presentation
      札幌
    • Related Report
      2013 Annual Research Report
  • [Presentation] 陸上植物に近縁な藻類シャジクモのゲノム解読2013

    • Author(s)
      西山智明,豊田敦, 鈴木穣, 藤山秋佐夫, 坂山英俊
    • Organizer
      北陸植物学会
    • Place of Presentation
      金沢
    • Related Report
      2013 Annual Research Report
  • [Presentation] Linking Body Size to Morphology of Neuronal Dendritic Arbors in Adults2013

    • Author(s)
      T. Uemura, K. Shimono, T. Nomura, T. Usui, H. Komai, A. Toyoda
    • Organizer
      2013 American Society for Cell Biology (ASCB) Annual Meeting
    • Place of Presentation
      New Orleans, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] 重症度の差異を認めたレット症候群の一卵性双生児のゲノム・エピゲノム比較解析2013

    • Author(s)
      久保田健夫、三宅邦夫、水口洋平、伊藤雅之、後藤雄一、豊田敦
    • Organizer
      日本人類遺伝学会第58回大会
    • Place of Presentation
      宮城県仙台市 江陽グランドホテル
    • Related Report
      2013 Annual Research Report
  • [Presentation] 近位筋優位運動感覚ニューロパチー(HMSN-P)の病因遺伝子2013

    • Author(s)
      石浦 浩之, 辻 省次
    • Organizer
      第54回神経学会学術大会シンポジウム
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] Exome解析による孤発性疾患の疾患関連遺伝子の探索.2013

    • Author(s)
      三井 純
    • Organizer
      第54回神経学会学術大会シンポジウム
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] エクソーム解析による遺伝的異質性の高い疾患に対する遺伝子検査2013

    • Author(s)
      三井 純,後藤 順,辻 省次
    • Organizer
      第20回日本遺伝子診療学会大会
    • Place of Presentation
      浜松
    • Related Report
      2013 Annual Research Report
  • [Presentation] パーソナルゲノム解析が医療を変貌させる2013

    • Author(s)
      三井 純,辻 省次
    • Organizer
      第85回日本遺伝学会市民公開講座
    • Place of Presentation
      横浜
    • Related Report
      2013 Annual Research Report
  • [Presentation] COQ2変異は家族性・孤発性多系統萎縮症と関連する2013

    • Author(s)
      三井 純,松川 敬志,石浦 浩之,福田 陽子,市川 弥生子,伊達 英俊,Budrul Ahsan,中原 康雄,百瀬 義雄,高橋 祐二,岩田 淳,後藤 順,The MSA Research Collaboration,辻 省次
    • Organizer
      第58回日本人類遺伝学会
    • Place of Presentation
      仙台
    • Related Report
      2013 Annual Research Report
  • [Presentation] JASPAC. 常染色体劣性遺伝が疑われた遺伝性痙性対麻痺症例のexome解析2013

    • Author(s)
      石浦 浩之,高 紀信,嶋崎 晴雄,三井 純,高橋 祐二,後藤 順,吉村 淳,土井 晃一郎,森下 真一,佐々木 秀直,瀧山 嘉久,辻省次
    • Organizer
      第58回日本人類遺伝学会
    • Place of Presentation
      仙台
    • Related Report
      2013 Annual Research Report
  • [Presentation] Molecular genetics of multiple system atrophy: results from the Japan Multiple System Atrophy Research Consortium.2013

    • Author(s)
      JAMSAC (Japan Multiple System Atrophy Research Consortium), Jun Mitsui, Yaeko Ichikawa, Jun Goto, Shoji Tsuji
    • Organizer
      17th International Congress of Parkinson’s Disease and Movement Disorder
    • Place of Presentation
      Sydney, Australia
    • Related Report
      2013 Annual Research Report
  • [Presentation] Mutations of COQ2 in Familial and Sporadic Multiple System Atrophy2013

    • Author(s)
      Mitsui J, Matsukawa T, Ishiura H, Fukuda Y, Ichikawa Y, Date H, Ahsan B, Nakahara Y, Momose Y, Takahashi Y, Goto J, Yamamoto Y, Shirahige K, Takahashi H, Onodera O, Nishizawa M, Kondo T, Murayama S,
    • Organizer
      American Society of Human Genetics 63rd Annual Meeting
    • Place of Presentation
      Boston, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] ゲノム・遺伝子解析研究がもたらす革新(教育講演)2013

    • Author(s)
      徳永勝士
    • Organizer
      第62回日本医学検査学会
    • Place of Presentation
      高松
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] SORL1 is Genetically Associated With Late-Onset Alzheimer's Disease in Japanese, Koreans and Caucasians.2013

    • Author(s)
      Miyashita A, Kuwano R, Schellenberg G, Ihara Y, Kanazawa I, Tsuji S, Yamamoto K, Tokunaga K, Nishida N, Yoshida M, Pericak-Vance M, Haines J, Mayeux R, St. George-Hyslop P, Kim JW, Takahashi S, Wang LS, Jun G, Koike A, Farrer L
    • Organizer
      AAIC
    • Place of Presentation
      米国ボストン
    • Related Report
      2013 Annual Research Report
  • [Presentation] タンパク質-RNA相互作用におけるRNA2次構造認識機構:塩基対確率に基づく解析2013

    • Author(s)
      岩切 淳一,亀田 倫史,浅井 潔,浜田 道昭
    • Organizer
      第15回日本RNA学会年会
    • Place of Presentation
      愛媛県・県民文化会館・ひめぎんホール
    • Related Report
      2013 Annual Research Report
  • [Presentation] ゲノムアセンブリのギャップを高精度で埋めるツール GMcloser の開発2013

    • Author(s)
      小杉 俊一、平川 英樹、田畑 哲之
    • Organizer
      NGS現場の会 第3回研究会
    • Place of Presentation
      神戸国際会議場
    • Related Report
      2013 Annual Research Report
  • [Presentation] Liverwort Genome Analysis and Construction of the Genome Annotation Database (ポスター)2013

    • Author(s)
      Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
    • Organizer
      JSBi2013
    • Place of Presentation
      タワーホール船堀(東京)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Liverwort Genome Analysis and Construction of the Genome Annotation Database: ゼニゴケゲノム解析とゲノムアノテーションデータベースの構築 (ポスター)2013

    • Author(s)
      Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2013 Annual Research Report
  • [Presentation] Our Informatics Approaches for Marchantia Genome2013

    • Author(s)
      Nagasaki H, Iida N, Nakamura Y.
    • Organizer
      Marchantia IV
    • Place of Presentation
      メルボルン、オーストラリア
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 発がんゲノムにおける非コードRNA の網羅的発現解析2013

    • Author(s)
      天野浩司郎,青戸良賢,若林雄一,榊原康文
    • Organizer
      第72回日本癌学会学術総会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2013 Annual Research Report
  • [Presentation] デジタルクラスタリングを用いた発がん過程の経時的トランスクリプトーム解析2013

    • Author(s)
      青戸良賢,若林雄一,榊原康文
    • Organizer
      第72回日本癌学会学術総会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヒト膵臓がんにおける臓器内真正細菌のゲノム解析2013

    • Author(s)
      榊原康文,鈴木秀和
    • Organizer
      第72回日本癌学会学術総会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2013 Annual Research Report
  • [Presentation] Identifying Mutations Bringing de novo Gene Birth to Saccharomyces sensu stricto Genomes2013

    • Author(s)
      Zhang W, Ichinose N, Kumada T, Yada T
    • Organizer
      日本バイオインフォマティクス学会年会
    • Place of Presentation
      タワーホール船堀
    • Related Report
      2013 Annual Research Report
  • [Presentation] Co-regulatory relation between cancer genes and miRNAs2013

    • Author(s)
      Kobayashi H, Ichinose N, Kumada T, Yada T
    • Organizer
      日本バイオインフォマティクス学会年会
    • Place of Presentation
      タワーホール船堀
    • Related Report
      2013 Annual Research Report
  • [Presentation] Motif identification based on the idea of Gibbs Sampling and Genetic Algorithm2013

    • Author(s)
      Zheng P, Ichinose N, Kumada T, Yada T
    • Organizer
      日本バイオインフォマティクス学会年会
    • Place of Presentation
      タワーホール船堀
    • Related Report
      2013 Annual Research Report
  • [Presentation] Methylation Structure of Honey Bee Genome2013

    • Author(s)
      Ichinose N, Yada T, Gotoh O
    • Organizer
      日本バイオインフォマティクス学会年会
    • Place of Presentation
      タワーホール船堀
    • Related Report
      2013 Annual Research Report
  • [Presentation] Deciphering Regulatory Code from Transcription Activity Data of Mutagenesis Promoters2013

    • Author(s)
      Liu Y, Irie T, Suzuki Y, Ichinose N, Kumada T, Yada T
    • Organizer
      日本バイオインフォマティクス学会年会
    • Place of Presentation
      タワーホール船堀, 東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] 転写制御コードの多様性に挑む2013

    • Author(s)
      矢田哲士
    • Organizer
      ゲノム多様性のデータ利用
    • Place of Presentation
      統計数理研究所, 東京
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] miRNA-target prediction based on transcriptional regulation2012

    • Author(s)
      T.Fujiwara
    • Organizer
      ISCB-Asia/SCCG
    • Place of Presentation
      Shenzhen, China
    • Year and Date
      2012-12-17
    • Related Report
      2012 Annual Research Report
  • [Presentation] DDBJパイプラインによるゼニゴケゲノム解析とゲノムアノテーションデータベースの構築2012

    • Author(s)
      長崎 英樹
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Year and Date
      2012-12-13
    • Related Report
      2012 Annual Research Report
  • [Presentation] Detection of Splice Junctions from Mid-to-Long RNA-seq Reads by Spaln2012

    • Author(s)
      C.Zeng
    • Organizer
      23rd Int. Conf. on Genome Inform.
    • Place of Presentation
      Tainan, Taiwan
    • Year and Date
      2012-12-12
    • Related Report
      2012 Annual Research Report
  • [Presentation] パーソナルゲノム時代の生命倫理2012

    • Author(s)
      加藤和人
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Year and Date
      2012-12-11
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Domestic systems for Ethical, Legal and Social implications (ELSI) of human genome researches in Japan2012

    • Author(s)
      山本奈津子
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Year and Date
      2012-12-11
    • Related Report
      2012 Annual Research Report
  • [Presentation] Relations between personal information and personal genetic information: revision of Japanese Ethical Guidelines for Human Genome Research2012

    • Author(s)
      野村安以
    • Organizer
      第35回分子生物学会年会
    • Place of Presentation
      福岡
    • Year and Date
      2012-12-11
    • Related Report
      2012 Annual Research Report
  • [Presentation] 「ヒトゲノム・遺伝子解析研究に関する倫理指針」の改定をめぐる批判的談話分析2012

    • Author(s)
      野村安以
    • Organizer
      科学社会学会設立総会
    • Place of Presentation
      東京
    • Year and Date
      2012-12-02
    • Related Report
      2012 Annual Research Report
  • [Presentation] Genomic approaches to the etiology of autoimmune diseases2012

    • Author(s)
      Tokunaga K
    • Organizer
      Centennial of Hashimoto Disease International Symposium Ⅱ - Autoimmune Diseases - Etiology and Therapeutics
    • Place of Presentation
      福岡
    • Year and Date
      2012-12-02
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Towards System-level Understandings of Transcriptional Regulations2012

    • Author(s)
      Sumio Sugano
    • Organizer
      The 7th International Conference on Genomics Bio-IT APAC 2012
    • Place of Presentation
      Hong Kong
    • Year and Date
      2012-11-30
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Genome-wide search for disease genes and drug response genes: Implications and perspectives2012

    • Author(s)
      Tokunaga K
    • Organizer
      The 39th International Symposium on Nucleic Acids Chemistry 2012
    • Place of Presentation
      名古屋
    • Year and Date
      2012-11-17
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 個人情報と遺伝情報の関係-ゲノム指針の見直しを巡る議論から-2012

    • Author(s)
      野村安以
    • Organizer
      第11回科学技術社会論学会年次研究大会
    • Place of Presentation
      神奈川
    • Year and Date
      2012-11-16
    • Related Report
      2012 Annual Research Report
  • [Presentation] ゲノム解析技術の急速な進化がもたらすゲノム研究の新たな展開2012

    • Author(s)
      林哲也
    • Organizer
      日本科学哲学会第45回(2012年)大会
    • Place of Presentation
      宮崎市
    • Year and Date
      2012-11-10
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] メタゲノミクスの現状と未来2012

    • Author(s)
      黒川顕
    • Organizer
      情報・システム研究機構シンポジウム2012「生命科学のビッグデータ革命」
    • Place of Presentation
      東京
    • Year and Date
      2012-11-09
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Research Policy of the “Genome Science” Project in Japan.2012

    • Author(s)
      Jusaku Minari
    • Organizer
      The 62nd American Society of Human Genetics (ASHG) Annual Meeting,
    • Place of Presentation
      San Francisco, USA
    • Year and Date
      2012-11-06
    • Related Report
      2012 Annual Research Report
  • [Presentation] 日本人の起源・形成と疾患体質2012

    • Author(s)
      徳永勝士
    • Organizer
      第62回日本体質医学会総会
    • Place of Presentation
      大阪
    • Year and Date
      2012-11-03
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] A clustering method for cancer microarray data from mathematical and biological viewpoints2012

    • Author(s)
      S.Yue
    • Organizer
      日本バイオインフォマティクス学会年会
    • Place of Presentation
      東京
    • Year and Date
      2012-10-14
    • Related Report
      2012 Annual Research Report
  • [Presentation] Governance of Biobank2012

    • Author(s)
      Ryuichi Ida
    • Organizer
      9th Global Summit of National Bioethics Advisory Bodies
    • Place of Presentation
      Carthage, Tunisia
    • Year and Date
      2012-09-26
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] パーソナルゲノム解読の倫理的法的社会的課題2012

    • Author(s)
      加藤和人
    • Organizer
      第35回日本神経科学大会
    • Place of Presentation
      名古屋
    • Year and Date
      2012-09-18
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] トマト果実分化機構解明に向けた新規遺伝資源開発2012

    • Author(s)
      有泉 亨
    • Organizer
      2012年日本育種学会秋季大会(第122回講演会)
    • Place of Presentation
      京都
    • Year and Date
      2012-09-15
    • Related Report
      2012 Annual Research Report
  • [Presentation] 新型シークエンサのアーカイブ配列と解析パイプライン:系統間SNP解析を事例として2012

    • Author(s)
      神沼英里
    • Organizer
      第122回日本育種学会講演会ワークショップ06 "育種のための情報解析ツール使い倒し塾"
    • Place of Presentation
      京都
    • Year and Date
      2012-09-14
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] ELSI 2.0: View from Japan (ELSI of genomics and importance of networking researchers in Asia)2012

    • Author(s)
      Kazuto Kato
    • Organizer
      International Symposium: Developing Frameworks for ELSI research on Personalized Medicine
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2012-08-07
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 遺伝子診療における次世代シーケンサー2012

    • Author(s)
      井ノ上 逸朗
    • Organizer
      日本遺伝子診療学会
    • Place of Presentation
      千葉
    • Year and Date
      2012-07-28
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 新興病原体Escherichia albertiiのゲノム解析2012

    • Author(s)
      大岡唯祐
    • Organizer
      第16回腸管出血性大腸菌感染症研究会
    • Place of Presentation
      秋田市
    • Year and Date
      2012-07-19
    • Related Report
      2012 Annual Research Report
  • [Presentation] 個別化医療時代の生命倫理―ゲノム情報に基づく医療を社会の理解と支持を得て進めるために―2012

    • Author(s)
      Ryuichi Ida
    • Organizer
      第39回日本小児栄養消化器肝臓学会
    • Place of Presentation
      大阪
    • Year and Date
      2012-07-14
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Molecular Characterization of Gene Cluster Responsible for Hydrogen Evolution in Vibrio tritonius AM2T.2012

    • Author(s)
      Matsumura Y.
    • Organizer
      The 9th Asia-Pacific Marine Biotechnology Conference (APMBC2012)
    • Place of Presentation
      高知
    • Year and Date
      2012-07-13
    • Related Report
      2012 Annual Research Report
  • [Presentation] A Research Policy of the “Genome Science” Project in Japan.2012

    • Author(s)
      Jusaku Minari
    • Organizer
      The 11th Conference of the International Association of Bioethics
    • Place of Presentation
      Rotterdam, Netherlands.
    • Year and Date
      2012-06-26
    • Related Report
      2012 Annual Research Report
  • [Presentation] 疾患関連遺伝子のゲノム全域探索の現状と展望2012

    • Author(s)
      徳永勝士
    • Organizer
      「ワークショップ:最近の遺伝子研究からみた肝臓病の現状と個別化医療への展望」第48回日本肝臓学会総会
    • Place of Presentation
      金沢
    • Year and Date
      2012-06-07
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] DDBJ Pipeline, a cloud computing based annotation tool for new-generation sequencing data2012

    • Author(s)
      長崎英樹
    • Organizer
      NGS現場の会 第2回研究会
    • Place of Presentation
      吹田
    • Year and Date
      2012-05-24
    • Related Report
      2012 Annual Research Report
  • [Presentation] Genome-wide approaches to complex disease: Advances and perspectives2012

    • Author(s)
      Tokunaga K
    • Organizer
      Genomic Analysis of Diseases Workshop, Nature Conference
    • Place of Presentation
      Hangzhou, China
    • Year and Date
      2012-05-18
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] NGS由来大量データレポジトリDRAと解析支援パイプラインの提供2012

    • Author(s)
      中村保一
    • Organizer
      理研シンポジウム・データ駆動型生命情報科学の挑戦
    • Place of Presentation
      仙台
    • Year and Date
      2012-05-09
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Significant prevalence of Escherichia albertii among the strains identified as enteropathogenic and enterohemorrhagic E. coli and the presence of Shiga toxin-producing E. albertii strains.2012

    • Author(s)
      Ooka T.
    • Organizer
      VTEC 2012: 8th International Symposium on Shiga Toxin (Verocytotoxin) producing Escherichia coli infections
    • Place of Presentation
      Amsterdam, The Netherlands.
    • Year and Date
      2012-05-06
    • Related Report
      2012 Annual Research Report
  • [Presentation] 環境メタゲノミクス2012

    • Author(s)
      黒川顕
    • Organizer
      日本農芸化学会2012年度大会シンポジウム
    • Place of Presentation
      京都(招待講演)
    • Year and Date
      2012-03-25
    • Related Report
      2011 Annual Research Report
  • [Presentation] Integrative Transcriptome Analysis2012

    • Author(s)
      Yutaka Suzuki
    • Organizer
      FIRST symposium
    • Place of Presentation
      Osaka, Japan
    • Year and Date
      2012-03-13
    • Related Report
      2011 Annual Research Report
  • [Presentation] Development of an integrated analysis system for metagenomics and its applications for soil metagenome analysis2012

    • Author(s)
      Kurokawa, K.
    • Organizer
      BiWO2011
    • Place of Presentation
      東京(招待講演)
    • Year and Date
      2012-01-26
    • Related Report
      2011 Annual Research Report
  • [Presentation] 新型シーケンサ・アーカイブ配列のクラウド型解析パイプラインDDBJ Pipeline進捗:de novoアセンブル配列注釈ワークフロー2011

    • Author(s)
      長崎英樹、望月孝子、児玉悠一、猿橋智、高木利久、大久保公策、神沼英里、中村保一
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2011-12-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] 新型シーケンサ・アーカイブ配列からのDNA多型注釈データベース構築系統識別ワークフローの開発2011

    • Author(s)
      猿橋智、長崎英樹、望月孝子、神沼英里、中村保一
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2011-12-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] Sequence specific error profile of Illumina sequencers2011

    • Author(s)
      Kensuke Nakamura
    • Organizer
      Functional Genomics and Systems Biology 2011 Wellcome Trust Scientific Conferences
    • Place of Presentation
      Hinxton, Cambridge, UK
    • Year and Date
      2011-11-30
    • Related Report
      2011 Annual Research Report
  • [Presentation] DDBJ Sequence Read Archive and a cloud-computing based analytical pipeline for next-generation sequencing reads2011

    • Author(s)
      Satoshi Saruhashi, Takako Mochizuki, Hideki Nagasaki, Yuichi Kodama, Asami Nozaki, Kyung-Bum Lee, Toshihisa Okido, Emi Yokoyama, Eli Kaminuma, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
    • Organizer
      8th Solanaceae and 2nd Cucurbitaceae Joint Conference
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Year and Date
      2011-11-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] ゲノムからメタゲノムへ2011

    • Author(s)
      黒川顕
    • Organizer
      CBI/JSBi2011合同大会
    • Place of Presentation
      神戸(招待講演)
    • Year and Date
      2011-11-09
    • Related Report
      2011 Annual Research Report
  • [Presentation] 日本DNAデータバンク(DDBJ)での新規電算機システムによる超並列型シーケンサ由来の大規模塩基配列情報解析支援の試み2011

    • Author(s)
      望月孝子, 児玉悠一, 猿橋智, 長崎英樹, 神沼英里, 菅原秀明, 大久保公策, 高木利久, 中村保一
    • Organizer
      「生命情報科学若手の会」第2回研究会
    • Place of Presentation
      国立遺伝学研究所(静岡県三島市)
    • Year and Date
      2011-10-09
    • Related Report
      2011 Annual Research Report
  • [Presentation] 新型シーケンサーによるメタゲノム解析2011

    • Author(s)
      黒川顕
    • Organizer
      第63回日本生物工学会大会
    • Place of Presentation
      東京(招待講演)
    • Year and Date
      2011-09-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] Lessons from genome-wide search for disease-related genes2011

    • Author(s)
      Tokunaga K
    • Organizer
      The 20^<th> Annual Conference of Korean Genome Organization
    • Place of Presentation
      Gangoe-myeon, Korea
    • Year and Date
      2011-09-01
    • Related Report
      2011 Annual Research Report
  • [Presentation] 次世代シーケンサーのアーカイブDBとクラウド型データ解析システムの紹介2011

    • Author(s)
      神沼英里、児玉悠一、猿橋智、望月孝子、長崎英樹、高木利久、大久保公策、中村保一
    • Organizer
      第154回農林交流センターワークショップ「次世代シーケンサーを利用したゲノム解析の実際」
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2011-08-19
    • Related Report
      2011 Annual Research Report
  • [Presentation] イルミナシーケンサーの配列特異的エラーについて2011

    • Author(s)
      中村建介
    • Organizer
      日本進化学会第13回大会
    • Place of Presentation
      京都大学
    • Year and Date
      2011-07-31
    • Related Report
      2011 Annual Research Report
  • [Presentation] Sequence specific error profile of Illumina sequencers2011

    • Author(s)
      Kensuke Nakamura
    • Organizer
      SMBE2011 (Society of Molecular Biology and Evolution)
    • Place of Presentation
      京都大学
    • Year and Date
      2011-07-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] DDBJ Sequence Read Archive and a cloud-computing based annotation tool for next-generation sequencing data2011

    • Author(s)
      Nagasaki, H., Mochizuki, T., Kodama, Y., Saruhashi, S., Takagi, T., Okubo, K., Kaminuma, E., Nakamura, Y.
    • Organizer
      The 2nd International Conference on the Progress of "1000 Plant & Animal Reference Genomes Project"
    • Place of Presentation
      Shenzhen, China
    • Year and Date
      2011-07-11
    • Related Report
      2011 Annual Research Report
  • [Presentation] DDBJ Read Annotation Pipeline : 新型シーケンサ由来配列のクラウト型解析パイプライン2011

    • Author(s)
      猿橋智, 児玉悠一, 李慶範, 大城戸利久, 横山会美, 長崎英樹, 望月孝子, 神沼英里, 菅原秀明, 高木利久, 大久保公策, 中村保一
    • Organizer
      NGS現場の会第1回研究会
    • Place of Presentation
      熱海ニューフジヤホテル(静岡県熱海市)
    • Year and Date
      2011-05-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] パーソナルゲノム研究の倫理的課題2011

    • Author(s)
      加藤和人
    • Organizer
      第52回日本神経学会学術大会
    • Place of Presentation
      名古屋国際会議場(招待講演)
    • Year and Date
      2011-05-19
    • Related Report
      2011 Annual Research Report
  • [Presentation] DDBJ Read Annotation Pipeline:新型シーケンサ由来配列のクラウド型パイプライン2011

    • Author(s)
      長崎英樹, 望月孝子, 神沼英里, 渡邊成樹, 児玉悠一, 猿橋智, 菅原秀明, 高木利久, 大久保公策, 中村保一
    • Organizer
      第52回日本植物生理学会年会
    • Place of Presentation
      東北大学(宮城県仙台市)
    • Year and Date
      2011-03-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] Genetic Variation Associated with Nucleosome Structure and DNA Methylation2011

    • Author(s)
      Shinichi Morishita
    • Organizer
      Fish Genome Meeting
    • Place of Presentation
      Sanger Center, Cambridge, UK
    • Year and Date
      2011-03-11
    • Related Report
      2010 Annual Research Report
  • [Presentation] Searching Massive Epigenome Data for Evolutionarily Conserved Sequence Motifs2011

    • Author(s)
      Shinichi Morishita
    • Organizer
      IEEE International Conference on Computational Advances in Bio and medical Sciences
    • Place of Presentation
      Orland, Florida, USA
    • Year and Date
      2011-02-03
    • Related Report
      2010 Annual Research Report
  • [Presentation] DDBJ Read Annotation Pipeline : A cloud based pipeline for high-throughput analysis of next generation sequencing data2011

    • Author(s)
      Nagasaki, H., Mochizuki, T., Watanabe S., Morizaki, S., Kodama Y., Saruhashi, S., Takagi T., Okubo K., Kaminuma E., Nakamura, Y.
    • Organizer
      Plant and Animal Genome XIX Conference
    • Place of Presentation
      San Diego, USA
    • Year and Date
      2011-01-15
    • Related Report
      2010 Annual Research Report
  • [Presentation] A research activity for ethical, legal and social implications of personal genomics in Japan2011

    • Author(s)
      Jusaku Minari, Tetsuya Shirai, Kazuto Kato
    • Organizer
      The 9^<th> International Workshop on Advanced Genomics, Tokyo, Japan
    • Place of Presentation
      学術総合センター(一橋記念講堂)
    • Related Report
      2011 Annual Research Report
  • [Presentation] A research activity for ethical, legal, and social implications of personal genomics in Japan2011

    • Author(s)
      T.Shirai, J.Minrai, A.Nomura, K.Kato
    • Organizer
      The 12^<th> International Congress of Human Genetics (ICHG)/The 61^<th> ASHG Annual Meeting, Montreal, Canada
    • Place of Presentation
      Montreal Convention Centre
    • Related Report
      2011 Annual Research Report
  • [Presentation] ヒトゲノム研究における「研究ガバナンス」の構築2011