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Stratification of gastroenterological tumors by genome-wide analysis of DNA methylation alteration.

Research Project

Project/Area Number 22390255
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Digestive surgery
Research InstitutionThe University of Tokyo

Principal Investigator

KANEDA Atsushi  東京大学, 先端科学技術研究センター, 特任准教授 (10313024)

Co-Investigator(Renkei-kenkyūsha) TSUTSUMI Shuichi  東京大学, 先端科学技術研究センター, 特任准教授 (30345152)
UOZAKI Hiroshi  東京大学, 医学部附属病院, 講師 (10296246)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥19,110,000 (Direct Cost: ¥14,700,000、Indirect Cost: ¥4,410,000)
Fiscal Year 2012: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2011: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2010: ¥8,190,000 (Direct Cost: ¥6,300,000、Indirect Cost: ¥1,890,000)
Keywords小腸大腸肛門外科学 / 癌 / エピゲノム / エピジェネティクス / マイクロアレイ / 次世代シーケンサー / 情報工学
Research Abstract

DNA methylation analysis on genome-wide scale revealed three distint epigenotypes in gastric cancer and Epstein-Barr virus infection is the cause for extensive DNA methylation epigenotype. As for colorectal cancer, DNA methylation epigenotypes was found to be established already at adenoma stage; serrated adenoma showed high-methylation epigenotype with strong correlation to BRAF mutation, while non-serrated adenoma was classified into intermediate- and low-methylation epigenotypes.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (55 results)

All 2013 2012 2011 2010 Other

All Journal Article (14 results) (of which Peer Reviewed: 5 results) Presentation (33 results) (of which Invited: 2 results) Book (2 results) Remarks (3 results) Patent(Industrial Property Rights) (3 results) (of which Overseas: 2 results)

  • [Journal Article] Intermediate methylation epigenotype and its correlation to KRAS mutation in conventional colorectal adenoma2012

    • Author(s)
      Yagi K, Takahashi H, Akagi K, Matsusaka K, Seto Y, Aburatani H, Nakajima A,Kaneda A
    • Journal Title

      Am J Pathology

      Volume: 180(2) Issue: 2 Pages: 616-25

    • DOI

      10.1016/j.ajpath.2011.10.010

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Epstein-Barr virusinfection as an epigenetic driver of tumorigenesis2012

    • Author(s)
      Kaneda A, Matsusaka K, Aburatani H, Fukayama M
    • Journal Title

      Cancer Research

      Volume: Vol.72 Issue: 14 Pages: 3445-3450

    • DOI

      10.1158/0008-5472.can-11-3919

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] がんエピゲノムマーカー2012

    • Author(s)
      金田篤志
    • Journal Title

      日本臨床

      Volume: 70 Pages: 749-753

    • Related Report
      2012 Annual Research Report
  • [Journal Article] がんエビゲノムマーカー2012

    • Author(s)
      金田篤志
    • Journal Title

      日本臨床

      Volume: (In press)(掲載確定)

    • Related Report
      2011 Annual Research Report
  • [Journal Article] Two groups of DNA methylation markers to classify colorectal cancer into three epigenotypes2011

    • Author(s)
      Kaneda, A., and Yagi, K
    • Journal Title

      Cancer Sci

      Volume: 102 Pages: 18-24

    • NAID

      10029288084

    • Related Report
      2012 Final Research Report
  • [Journal Article] Classification of Epstein-Barr virus-positive gastric cancers by definition of DNA methylation epigenotypes2011

    • Author(s)
      Matsusaka K, Kaneda A, Nagae G, Ushiku T, Kikuchi Y, Hino R, Uozaki H, Seto Y,Takada K, Aburatani H, Fukayama M
    • Journal Title

      Cancer Res

      Volume: 71 Issue: 23 Pages: 7187

    • DOI

      10.1158/0008-5472.can-11-1349

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] HCCとエビゲノム2011

    • Author(s)
      金田篤志
    • Journal Title

      肝胆膵

      Volume: 62 Pages: 933-943

    • Related Report
      2011 Annual Research Report
  • [Journal Article] がんのエビゲノム異常2011

    • Author(s)
      金田篤志
    • Journal Title

      細胞

      Volume: 43 Pages: 504-507

    • Related Report
      2011 Annual Research Report
  • [Journal Article] Two groups of DNA methylation markers to classify colorectal cancer into three epigenotypes.2011

    • Author(s)
      Kaneda A, Yagi K
    • Journal Title

      Cancer Sci

      Volume: 102 Pages: 18-24

    • NAID

      10029288084

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] HCCとエピゲノム2011

    • Author(s)
      金田篤志
    • Journal Title

      肝胆膵

      Volume: 62(In press掲載確定)

    • Related Report
      2010 Annual Research Report
  • [Journal Article] Identification of genes preferentially methylated in hepatitis C virus-related hepatocellular carcinoma2010

    • Author(s)
      Deng, Y.B., Nagae, G., Midorikawa, Y., Yagi, K., Tsutsumi, S., Yamamoto, S., Hasegawa, K., Kokudo, N., Aburatani, H., and Kaneda, A
    • Journal Title

      Cancer Sci

      Volume: 101 Pages: 1501-1510

    • NAID

      10026593919

    • Related Report
      2012 Final Research Report
  • [Journal Article] Identification of genes preferentially methylated in hepatitis C virus-related hepatocellular carcinoma.2010

    • Author(s)
      Deng YB, Kaneda A, et al.
    • Journal Title

      Cancer Sci

      Volume: 101 Pages: 1501-1510

    • NAID

      10026593919

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNAメチローム解析技術の発展と最新テクノロジー2010

    • Author(s)
      金田篤志
    • Journal Title

      実験医学

      Volume: 28 Pages: 1765-1773

    • Related Report
      2010 Annual Research Report
  • [Journal Article] 癌診断とエピゲノム2010

    • Author(s)
      金田篤志
    • Journal Title

      医学のあゆみ

      Volume: 235 Pages: 1038-1044

    • Related Report
      2010 Annual Research Report
  • [Presentation] Accumulation of epigenetic alteration involved in gastrointestinal carcinogenesis2013

    • Author(s)
      Atsushi Kaneda
    • Organizer
      2nd Joint Global COE Symposium of The IMSUT & RCAST Global COE, The University of Tokyo and Chiba University Global COE "Current and Future Trends in Genome-based Immunity, Infection and Cance
    • Place of Presentation
      東京
    • Year and Date
      2013-01-28
    • Related Report
      2012 Final Research Report
  • [Presentation] Infection of Epstein-Barr virus is epigenetic driver of tumorigenesis2012

    • Author(s)
      Atsushi Kaneda
    • Organizer
      2nd Japanese-French Cancer Workshop
    • Place of Presentation
      徳島
    • Year and Date
      2012-11-30
    • Related Report
      2012 Final Research Report
  • [Presentation] 胃癌におけるDNA超高メチル化群とEBウィルス感染2012

    • Author(s)
      金田篤志ら
    • Organizer
      第23回日本消化器
    • Place of Presentation
      徳島
    • Year and Date
      2012-11-16
    • Related Report
      2012 Final Research Report
  • [Presentation] 大腸癌における3群のエピジェノタイプと予後2012

    • Author(s)
      金田篤志
    • Organizer
      日本消化器関連学会週間(JDDW)
    • Place of Presentation
      神戸
    • Year and Date
      2012-10-11
    • Related Report
      2012 Final Research Report
  • [Presentation] エピゲノム異常と大腸癌発生2012

    • Author(s)
      金田篤志
    • Organizer
      岩手県大腸癌病理研究会
    • Place of Presentation
      盛岡
    • Year and Date
      2012-06-15
    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Presentation] PRC2 overexpression and H3K27me3 modification in small cell lung cancer2011

    • Author(s)
      Teruyuki Sato, Atsushi Kaneda, et al.
    • Organizer
      第70回日本癌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2011-10-04
    • Related Report
      2011 Annual Research Report
  • [Presentation] Markedly high methylation epigenotype identified in EB virus(+) gastric cancer and its induction by EB virus infection2011

    • Author(s)
      Keisuke Matsusaka, Atsushi Kaneda
    • Organizer
      第70回日本癌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2011-10-03
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] Decoding the genome and transcriptome of human pancreatic cancer by integrated next-generation sequencing technologies2011

    • Author(s)
      Linghua Wang, Atsushi Kaneda, et al.
    • Organizer
      第70回日本癌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2011-10-03
    • Related Report
      2011 Annual Research Report
  • [Presentation] Development of DNA methylation epigenotypes and their correlation to oncogene mutation in colorectal adenoma2011

    • Author(s)
      Koichi Yagi, Atsushi Kaneda, et al.
    • Organizer
      第70回日本癌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2011-10-03
    • Related Report
      2011 Annual Research Report
  • [Presentation] Epigenomic profiling of oral cancer2011

    • Author(s)
      Sayaka Yoshiba, Atsushi Kaneda, et al.
    • Organizer
      第70回日本癌学会総会
    • Place of Presentation
      名古屋
    • Year and Date
      2011-10-03
    • Related Report
      2011 Annual Research Report
  • [Presentation] 大腸癌前癌病変におけるDNAメチル化エピジェノタイプ2011

    • Author(s)
      八木浩一、金田篤志, ら
    • Organizer
      第5回日本エピジェネティクス研究会年会
    • Place of Presentation
      熊本
    • Year and Date
      2011-05-19
    • Related Report
      2011 Annual Research Report
  • [Presentation] 甲状腺乳頭癌、濾胞癌におけるエピジェネティック変異に関する検討2011

    • Author(s)
      菊池弥寿子、金田篤志, ら
    • Organizer
      第5回日本エピジェネティクス研究会年会
    • Place of Presentation
      熊本
    • Year and Date
      2011-05-19
    • Related Report
      2011 Annual Research Report
  • [Presentation] DNA Methylation Profiling of Papillary and Follicular Thyroid Cancer2011

    • Author(s)
      Yasuko Kikuchi, Atsushi Kaneda, et al.
    • Organizer
      第70回日本癌学会総会
    • Place of Presentation
      名古屋
    • Related Report
      2011 Annual Research Report
  • [Presentation] The role of inflammatory genes in cellular senescence2010

    • Author(s)
      Katayama Y, Kaneda A, et al.
    • Organizer
      第33回分子生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] 癌遺伝子変異と相関するエピジェノタイプと、癌遺伝子変異による早期細胞老化における重要因子のゲノム探索2010

    • Author(s)
      金田篤志, ら
    • Organizer
      第69回日本癌学会学術総会
    • Place of Presentation
      大坂
    • Year and Date
      2010-09-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] ゲノムワイドなプロモーターメチル化解析による肝癌の分子生物学的層別化2010

    • Author(s)
      永江玄太、金田篤志, ら
    • Organizer
      第69回日本癌学会学術総会
    • Place of Presentation
      大坂
    • Year and Date
      2010-09-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] 口腔癌におけるエピゲノム解析2010

    • Author(s)
      葭葉清香、金田篤志, ら
    • Organizer
      第69回日本癌学会学術総会
    • Place of Presentation
      大坂
    • Year and Date
      2010-09-23
    • Related Report
      2010 Annual Research Report
  • [Presentation] 甲状腺腫瘍におけるDNAメチル化のプロファイリングおよび遺伝子変化について2010

    • Author(s)
      菊池弥寿子、金田篤志, ら
    • Organizer
      第69回日本癌学会学術総会
    • Place of Presentation
      大坂
    • Year and Date
      2010-09-23
    • Related Report
      2010 Annual Research Report
  • [Presentation] 肺小細胞癌株のヒストン修飾異常に関する検討2010

    • Author(s)
      佐藤輝幸、金田篤志, ら
    • Organizer
      第69回日本癌学会学術総会
    • Place of Presentation
      大坂
    • Year and Date
      2010-09-23
    • Related Report
      2010 Annual Research Report
  • [Presentation] 定量的メチル化解析による大腸癌・腺腫のエピジェノタイピング2010

    • Author(s)
      八木浩一、金田篤志ら
    • Organizer
      第69回日本癌学会学術総会
    • Place of Presentation
      大阪
    • Year and Date
      2010-09-22
    • Related Report
      2012 Final Research Report
  • [Presentation] 定量的メチル化解析による大腸癌・腺腫のエピジェノタイピング2010

    • Author(s)
      八木浩一、金田篤志, ら
    • Organizer
      第69回日本癌学会学術総会
    • Place of Presentation
      大坂
    • Year and Date
      2010-09-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] EBV関連胃癌におけるDNAメチル化の網羅的解析2010

    • Author(s)
      松坂恵介、金田篤志, ら
    • Organizer
      第69回日本癌学会学術総会
    • Place of Presentation
      大坂
    • Year and Date
      2010-09-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] Three epigenotypes of colorectal cancer revealed by epigenotyping through quantitative DNA methylation analysis2010

    • Author(s)
      Kaneda A
    • Organizer
      The 3rd World Cancer Congress 2010
    • Place of Presentation
      Singapore, Republic of Singapore
    • Year and Date
      2010-06-23
    • Related Report
      2012 Final Research Report
  • [Presentation] Three epigenotypes of colorectal cancer revealed by epigenotyping through quantitative DNA methylation analysis2010

    • Author(s)
      Kaneda A
    • Organizer
      The 3^<rd> World Cancer Congress 2010
    • Place of Presentation
      Singapore, Republic of Singapore
    • Year and Date
      2010-06-23
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNAメチル化情報を用いた大腸癌の3つのエピジェノタイプの同定2010

    • Author(s)
      八木浩一、金田篤志, ら
    • Organizer
      第4回日本エピジェネティクス研究会年会
    • Place of Presentation
      米子
    • Year and Date
      2010-05-29
    • Related Report
      2010 Annual Research Report
  • [Presentation] 甲状腺乳頭癌におけるDNAメチル化解析

    • Author(s)
      菊池弥寿子、金田篤志ら
    • Organizer
      第6回日本エピジェネティクス研究会年会
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
  • [Presentation] DNA methylation alteration of Epstein-Barr virus genome and host cellular genome in EBV infection into gastric cels

    • Author(s)
      Keisuke Matsusaka, Atsushi Kaneda, et al.
    • Organizer
      第71回日本癌学会総会
    • Place of Presentation
      札幌
    • Related Report
      2012 Annual Research Report
  • [Presentation] DNA methylation Analysis of Papillary Thyroid Cancer

    • Author(s)
      Yasuko Kikuchi, Atsushi Kaneda, et al.
    • Organizer
      第71回日本癌学会総会
    • Place of Presentation
      札幌
    • Related Report
      2012 Annual Research Report
  • [Presentation] Analysis of histone modification alteration in gastric cancer cells during Epstein-Barr virus infection

    • Author(s)
      Sayaka Funata, Atsushi Kaneda, et al.
    • Organizer
      第71回日本癌学会総会
    • Place of Presentation
      札幌
    • Related Report
      2012 Annual Research Report
  • [Presentation] 大腸癌における3群のエピジェノタイプと予後.

    • Author(s)
      金田篤志
    • Organizer
      日本消化器関連学会週間(JDDW).
    • Place of Presentation
      神戸
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 胃癌におけるDNA超高メチル化群とEBウィルス感染.

    • Author(s)
      金田篤志ら
    • Organizer
      第23回日本消化器癌発生学会総会シンポジウム
    • Place of Presentation
      徳島
    • Related Report
      2012 Annual Research Report
  • [Presentation] Infection of Epstein-Barr virus is epigenetic driver of tumorigenesis.

    • Author(s)
      Atsushi Kaneda
    • Organizer
      2nd Japanese-French Cancer Workshop
    • Place of Presentation
      徳島
    • Related Report
      2012 Annual Research Report
  • [Presentation] Accumulation of epigenetic alteration involved in gastrointestinal carcinogenesis.

    • Author(s)
      Atsushi Kaneda
    • Organizer
      2nd Joint Global COE Symposium of The IMSUT & RCAST Global COE, The University of Tokyo and Chiba University Global COE “Current and Future Trends in Genome-based Immunity, Infection and Cancer”
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Book] In "Epigenomics From Chromatin Biology to Therapeutics"2012

    • Author(s)
      Kaneda A
    • Related Report
      2012 Final Research Report
  • [Book] Cancer classification by genome-wide and quantitative DNA methylation analyses. In "Epigenomics From Chromatin Biology to Therapeutics"(Krishnarao Appasani Ed.)2012

    • Author(s)
      Kaneda A
    • Publisher
      Cambridge University Press
    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.genome.rcast.u-tokyo.ac.jp/

    • Related Report
      2012 Final Research Report
  • [Remarks]

    • URL

      http://www.genome.rcast.u-tokyo.ac.jp/

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.genome.reast.u-tokyo.ac.jp/

    • Related Report
      2010 Annual Research Report
  • [Patent(Industrial Property Rights)] 癌細胞の存否を判定する方法および癌患者の予後を判定する方法2010

    • Inventor(s)
      金田篤志ら
    • Industrial Property Rights Holder
      京大学など
    • Filing Date
      2010-06-30
    • Related Report
      2012 Final Research Report
  • [Patent(Industrial Property Rights)] 特許2010

    • Inventor(s)
      金田篤志, ら
    • Industrial Property Rights Holder
      東京大学, など
    • Filing Date
      2010-06-30
    • Related Report
      2011 Annual Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 特許2010

    • Inventor(s)
      金田篤志, ら
    • Industrial Property Rights Holder
      東京大学など
    • Filing Date
      2010-06-30
    • Related Report
      2010 Annual Research Report
    • Overseas

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Published: 2010-08-23   Modified: 2019-07-29  

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