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An attempt to analysis of protein expression data as functional data, and cancer individualization diagnosis

Research Project

Project/Area Number 22500271
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Statistical science
Research InstitutionTohoku University (2012)
Japanese Foundation For Cancer Research (2010-2011)

Principal Investigator

MIYATA Satoshi  東北大学, 大学院・医学系研究科, 講師 (60360343)

Co-Investigator(Kenkyū-buntansha) ISOMURA Minoru  島根大学, 医学部, 講師 (40272497)
Co-Investigator(Renkei-kenkyūsha) MATSUURA Masaaki  公益財団法人がん研究会, がんゲノム研究部, 部長 (40173794)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2012: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2011: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2010: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsゲノム統計解析 / 関数データ解析 / 非線型回帰 / 統計数学 / 非線形回帰
Research Abstract

To extract functional data from protein expression profile, smoothing for functions with locally different smoothness was applied. We developed theoretical investigation of adaptive free-knot splines (AFKS), and implemented programing for it. We also interpreted that protein expression profile is obtained from probability distributions with indifferentiable points, and we analyzed estimation problem of extremely illegal probability distributions. The optimization of knots of spline functions was attained by optimizing the adaptive model selection criterion (AMSC) with evolutionary algorithms.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (32 results)

All 2013 2012 2011 2010 Other

All Journal Article (17 results) (of which Peer Reviewed: 17 results) Presentation (15 results)

  • [Journal Article] Effect of the Great East Japan Earthquake on cardiovascular diseases--report from the 10 hospitals in the disaster area2013

    • Author(s)
      Aoki T, Takahashi J, Fukumoto Y, Yasuda S, Ito K, Miyata S, Shinozaki T, Inoue K, Yagi T, Komaru T, Katahira Y, Obata A, Hiramoto T
    • Journal Title

      Circ J

      Volume: 77(2) Pages: 490-493

    • NAID

      10031138930

    • URL

      https://www.jstage.jst.go.jp/article/circj/77/2/77_CJ-12-1594/_article

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] The Great East Japan Earthquake Disaster and cardiovascular diseases2012

    • Author(s)
      Tatsuo Aoki
    • Journal Title

      Eur Heart J.

      Volume: 33 Issue: 22 Pages: 2796

    • DOI

      10.1093/eurheartj/ehs288

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Results of a Japanese nationwide multi-institutional study on lateral pelvic lymph node metastasis in low rectal cancer: Is it regional or distant disease?2012

    • Author(s)
      Akiyoshi T, Watanabe T, Miyata S, Kotake K, Muto T, Sugihara K
    • Journal Title

      Ann Surg

      Volume: 255 Issue: 6 Pages: 1129

    • DOI

      10.1097/sla.0b013e3182565d9d

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Clinical impact of intraoperative detection of carcinoembryonic antigen mRNA in pleural lavage specimens from nonsmall cell lung cancer patients2012

    • Author(s)
      Satoh Y, Sugai S, Uehara H, Mun M, Sakao Y, Okumura S, Nakagawa K, Ishikawa Y, Miki Y, Miyata S.
    • Journal Title

      Thorac Cardiovasc Surg

      Volume: 60 Issue: 8 Pages: 533

    • DOI

      10.1055/s-0031-1298066

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Effect of the Great East Japan Earthquake on cardiovascular diseases--report from the 10 hospitals in the disaster area.2012

    • Author(s)
      Aoki T, Takahashi J, Fukumoto Y, Yasuda S, Ito K, Miyata S, Shinozaki T, Inoue K, Yagi T, Komaru T, Katahira Y, Obata A, Hiramoto T, Sukegawa H, Ogata K, Shimokawa H.
    • Journal Title

      Circ J.

      Volume: 77(2): Pages: 490-493

    • NAID

      10031138930

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characteristics of University Spin-offs in Chemistry on the Business Relationship with Manufactures2012

    • Author(s)
      Yamamoto, K., Miyata, S., Kameyama, H.
    • Journal Title

      Journal of Chemical Engineering of Japan

      Volume: 45 Pages: 239-244

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Malignant transformation of breast fibroadenoma to malignant phyllodes tumor: Long-term outcome of 36 malignant phyllodes tumors2011

    • Author(s)
      Abe M, Miyata S, Nishimura S, Iijima K, Makita M, Akiyama F, Iwase T.
    • Journal Title

      Breast Cancer

      Volume: 18 Issue: 4 Pages: 268

    • DOI

      10.1007/s12282-009-0185-x

    • NAID

      10030393513

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Prognostic factors for survival after salvage surgery for locoregional recurrence of colon cancer2011

    • Author(s)
      Akiyoshi T, Fujimoto Y, Konishi T, Kuroyanagi H, Ueno M, Oya M, Miyata S, Yamaguchi T.
    • Journal Title

      Am J Surg.

      Volume: 201 Issue: 6 Pages: 726

    • DOI

      10.1016/j.amjsurg.2010.03.003

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Trib1 links the MEK1/ERK pathway in myeloid leukemogenesis2010

    • Author(s)
      Yokoyama T, Kanno Y, Yamazaki Y, Takahara T, Miyata S, Nakamura T
    • Journal Title

      Blood

      Volume: 116 Issue: 15 Pages: 2768

    • DOI

      10.1182/blood-2009-10-246264

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Therapeutic outcomes of endoscopic submucosal dissection of undifferentiated-type intramucosal gastric cancer without ulceration and preoperatively diagnosed as 20 millimetres or less in diameter2010

    • Author(s)
      Yamamoto Y, Fujisaki J, Hirasawa T, Ishiyama A, Yoshimoto K, Ueki N, Chino A, Tsuchida T, Hoshino E, Hiki N, Fukunaga T, Sano T, Yamaguchi T, Takahashi H, Miyata S, Yamamoto N, Kato Y, Igarashi M.
    • Journal Title

      Dig Endosc

      Volume: 22 Issue: 2 Pages: 112

    • DOI

      10.1111/j.1443-1661.2010.00945.x

    • NAID

      10028186679

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Discriminant model for cytologic distinction of large cell neuroendocrine carcinoma from small cell carcinoma of the lung2010

    • Author(s)
      Hoshi R, Furuta N, Horai T, Ishikawa Y, Miyata S, Satoh Y.
    • Journal Title

      J Thorac Oncol

      Volume: 5 Issue: 4 Pages: 472

    • DOI

      10.1097/jto.0b013e3181ce3cdd

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] 適応型モデル選択基準を用いた一般化加法モデルの推定2010

    • Author(s)
      宮田敏
    • Journal Title

      日本統計学会誌

      Volume: Vol.39,Series JNo.2 Pages: 369-391

    • NAID

      110007618322

    • Related Report
      2012 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A discriminant model for cytologic distinction of large cell neuroendocrine carcinoma from small cell carcinoma of the lung2010

    • Author(s)
      Hoshi, R., Miyata, S., et al.
    • Journal Title

      J.Thorac Oncol.

      Volume: 5(4) Pages: 472-478

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Therapeutic outcomes of endoscopic submucosal dissection of undifferentiated-type intramucosal gastric cancer without ulceration and preoperatively diagnosed as 20 millimetres or less in diameter2010

    • Author(s)
      Yamamoto Y, Miyata, S., et al.
    • Journal Title

      Dig Endosc.

      Volume: 22(2) Pages: 112-118

    • NAID

      10028186679

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tribl links the MEKI;ERK pathway in myeloid leukemogenesis2010

    • Author(s)
      Takashi Y., Miyata.S., et al.
    • Journal Title

      Blood

      Volume: 116(15) Pages: 2768-2775

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Prognostic factors for survival after salvage surgery for locoregional recurrence of colon cancer2010

    • Author(s)
      Akiyoshi T., Miyata.S., et al.
    • Journal Title

      Am J Surg.

      Volume: (Epub ahead of print)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Clinical Impact of Intraoperative Detection of Carcinoembryonic Antigen (CEA) mRNA in Pleural Lavage Specimens from Non-small Cell Lung Cancer

    • Author(s)
      Satoh, Y., Sugai, S., Uehara, H., Mun, M., Sakao, Y., Okumura, S., Nakagawa, K., Ishikawa, Y., Miki, Y., Miyata, S.
    • Journal Title

      Thoracic and Cardiovascular Surgeon

      Volume: (In press)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] New software for imaging mass spectrometry data2012

    • Author(s)
      Masaaki Matsuura, Masaru Ushijima, Akiko Yuba-Kubo, Masatoshi Wakui, Mitsuyo Ohmura, Kurando Hosaka, Takahiro Hayasaka, Noritaka Masaki, Satoshi Miyata, Ikuko Yao, Mitsutoshi Setou, Kiyoshi Ogawa, Shigeki Kajihara
    • Organizer
      American Association for Cancer Research Annual Meeting
    • Place of Presentation
      Chicago, IL. U.S.A.
    • Year and Date
      2012-04-03
    • Related Report
      2012 Final Research Report
  • [Presentation] New software for imaging mass spectrometry data2012

    • Author(s)
      M Ushijima, A Yuba-Kubo, M Wakui, M Ohmura, K Hosaka, T Hayasaka, N Masaki, S Miyata, I Yao, M Setou, K Ogawa, S Kajihara
    • Organizer
      American Association for Cancer Research Annual Meeting 2012
    • Place of Presentation
      Chicago, IL.U.S.A.
    • Related Report
      2011 Annual Research Report
  • [Presentation] イメージング質量分析データに基づいて領域を判別するソフトウェアの開発2011

    • Author(s)
      梶原茂樹、保坂蔵人、宮田敏、早坂孝宏、井上菜穂子、正木紀隆、久保亜希子、涌井昌俊、矢尾育子、小河潔、瀬藤光利、松浦正明
    • Organizer
      第59回質量分析総合討論会
    • Place of Presentation
      ホテル阪急エキスポパーク大阪
    • Year and Date
      2011-09-15
    • Related Report
      2012 Final Research Report
  • [Presentation] イメージング質量分析データに基づいて領域を判別するソフトウェアの開発2011

    • Author(s)
      梶原茂樹、保坂蔵人、宮田敏、早坂孝宏、井上菜穂子、正木紀隆、久保亜希子、涌井昌俊、矢尾育子、小河潔、瀬藤光利、松浦正明
    • Organizer
      第59回質量分析総合討論会2011
    • Place of Presentation
      ホテル阪急エキスポパーク
    • Year and Date
      2011-09-15
    • Related Report
      2011 Annual Research Report
  • [Presentation] Results of a nationwide Japanese study on lateral pelvic lymph node metastasis in low rectal cancer: Is it regional or distant disease?2011

    • Author(s)
      T. Akiyoshi, T. Watanabe, S. Miyata, K. Kotake, T. Muto, K. Sugihara (2011)
    • Organizer
      ASCO Annual Meeting: General Poster Session
    • Place of Presentation
      Chicago, Illinois. U.S.A.
    • Related Report
      2012 Final Research Report
  • [Presentation] Prediction of response to cancer chemotherapy by generalized additive model2010

    • Author(s)
      Miyata, S., Matsuura, M.
    • Organizer
      8^<th> Joint conference of AACR and JCA
    • Place of Presentation
      Waikoloa, Hawaii, U.S.A.
    • Year and Date
      2010-02-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] Development of detection method for novel fusion gene using Gene Chip Exon Array2010

    • Author(s)
      Wada, Y., Miyata, S., et al.
    • Organizer
      8^<th> Joint conference of AACR and JCA
    • Place of Presentation
      Waikoloa, Hawaii, U.S.A.
    • Year and Date
      2010-02-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] Gene Expression classification of human breast cancer2010

    • Author(s)
      Koichi Nagasaki, Minoru Isomura, Masaaki Matsuura, Masaru Ushijima, Satoshi Miyata, Hutoshi Akiyama, TetsuoNoda, Yoshio Miki
    • Organizer
      69th Annual Meeting of the Japanese Cancer Association
    • Place of Presentation
      Osaka International Convention Center, Osaka
    • Related Report
      2012 Final Research Report
  • [Presentation] Development of detection method for novel fusion gene using GeneChip Exon Array2010

    • Author(s)
      Yusaku Wada, Masaaki Matsuura, Minoru Sugawara, Masaru Ushijima, Satoshi Miyata
    • Organizer
      8th Joint Conference of the American Association for Cancer Research and the Japanese Cancer Association, Cancer Genomics, Epigenomics, and the Development of Novel Therapeutics
    • Place of Presentation
      Hilton Waikoloa Village Waikoloa, Hawaii. U.S.A.
    • Related Report
      2012 Final Research Report
  • [Presentation] Prediction of response to cancer chemotherapy by generalized additive model2010

    • Author(s)
      Satoshi Miyata, Masaaki Matsuura
    • Organizer
      8th Joint Conference of the American Association for Cancer Research and the Japanese Cancer Association, Cancer Genomics, Epigenomics, and theDevelopment of Novel Therapeutic
    • Place of Presentation
      Hilton Waikoloa Village Waikoloa, Hawaii. U.S.A.
    • Related Report
      2012 Final Research Report
  • [Presentation] Gene Expression classification of human breast cancer2010

    • Author(s)
      Nagasaki, K., Miyata, S., et al.
    • Organizer
      69^<th> Annual Meeting of the Japanese Cancer Association
    • Place of Presentation
      大阪国際会議場
    • Related Report
      2010 Annual Research Report
  • [Presentation] 原発性肺癌における細胞診での予後の推測に関する検討2010

    • Author(s)
      星利良, 宮田敏, et al.
    • Organizer
      第51回日本肺癌学会総会
    • Place of Presentation
      広島国際会議場
    • Related Report
      2010 Annual Research Report
  • [Presentation] 可変節点スプラインを用いた非線型時系列モデルの解析2010

    • Author(s)
      宮田敏
    • Organizer
      統計関連学会連合大会
    • Place of Presentation
      早稲田大学早稲田キャンパス
    • Related Report
      2010 Annual Research Report
  • [Presentation] Application of generalized additive models to prediction of response to cancer chemotherapy2010

    • Author(s)
      Miyata, S., Matsuura, M.
    • Organizer
      第69回日本癌学会学術総会
    • Place of Presentation
      大阪国際会議場
    • Related Report
      2010 Annual Research Report
  • [Presentation] Development of detection method for novel fusion gene using Gene Chip Exon Arrav2010

    • Author(s)
      Wada, Y., Miyata, S., et al.
    • Organizer
      第69回日本癌学会学術総会
    • Place of Presentation
      大阪国際会議場
    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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