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Controlling the higher order structure of single DNA molecule with attention to environmental stress

Research Project

Project/Area Number 22510123
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Nanomaterials/Nanobioscience
Research InstitutionRitsumeikan University

Principal Investigator

YOSHIKAWA Yuko  立命館大学, 総合科学技術研究機構, 教授 (80291871)

Project Period (FY) 2010-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2012: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2011: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2010: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords1分子計測 / 環境応答 / 長鎖DNA / DNA損傷 / 蛍光顕微鏡 / 単一分子観察 / DNAの高次構造 / 抗がん剤 / 抗酸化物質
Research Abstract

1. The protective effects of water-soluble derivatives of flavonoids on photo- and gamma ray-induced DNA double-strand breaks were evaluated in a quantitative manner. This observation demonstrated the dependence of the antioxidant potentials of these compounds on the source of irradiation. 2. It was found that tetrazolato-bridged dinuclear platinum(II) complexes induced the irreversible compaction of large genomic DNA, which was accompanied by a change in the secondary structure from the B to C form. 3.The appearance of the phase-segregated state in megabase-size DNA is markedly different from the all-or-none characteristics on the foldingtransition in a single sub-megabase-size DNA. 4. Novel stereoisomers of tetravalent polyamines were examined their ability to induce the compaction of single DNA molecules. It was found that Isomer (R,S-R,S) is more potent at inducing both DNA compaction and changes in the secondary structure.

Report

(4 results)
  • 2013 Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (21 results)

All 2013 2012 2011 2010 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results) Presentation (11 results) Remarks (1 results)

  • [Journal Article] Effective Chiral Discrimination of Tetravalent Polyamines on Single-DNA Compaction2013

    • Author(s)
      Yuko Yoshikawa, Naoki Umezawa, Yuki Imamura, Toshio Kanbe, Nobuki Kato, Kenichi Yoshikawa, Tadayuki Imanaka, Tsunehiko Higuchi
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 52 Issue: 13 Pages: 3712-3716

    • DOI

      10.1002/anie.201209144

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Second-and higher-order structural changes of DNA induced by antitumor-active tetrazolato-bridged dinuclear Platinum(II)complexes with different types of 5-substituent2013

    • Author(s)
      M.Uemura, Y.Yoshikawa, T.Sato,Y.Mino, K.Yoshikawa,M.Chikuma,S.Komeda
    • Journal Title

      J.Inorg. Biochem.

      Volume: 127 Pages: 169-174

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] A circular cichroism study uncovers a two-step interaction of antitumor azolato-bridged dinuclear platinum(II) complexes with calf thymus DNA2012

    • Author(s)
      Masako Uemura
    • Journal Title

      Metallomics

      Volume: 4 Issue: 7 Pages: 641-644

    • DOI

      10.1039/c2mt20022h

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Critical behavior of megabase-size DNA toward the transition into a compact state2011

    • Author(s)
      Yuko Yoshikawa, Yuki Suzuki, Kozo Yamada, Wakao Fukuda, Kenichi Yoshikawa, Kunio Takeyasu, Tadayuki Imanaka
    • Journal Title

      Journal of Chemical Physics

      Volume: 135 Issue: 22 Pages: 225101-225107

    • DOI

      10.1063/1.3666845

    • Related Report
      2013 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Unraveling DNA dynamics using atomic force microscopy (AFM)2011

    • Author(s)
      Yuki Suzuki, Yuko Yoshikawa, Shige H.Yoshimura, Kenichi Yoshikawa, Kunio Takeyasu
    • Journal Title

      Wiley Interdisciplinary Reviews : Nanomedicine and Nanobiotechnology

      Volume: 3 Issue: 6 Pages: 574-588

    • DOI

      10.1002/wnan.150

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Highly efficient DNA compaction mediated by an in vivo antitumor-active tetrazolato-bridged dinuclear platinum(II) complex2011

    • Author(s)
      Yuko Yoshikawa
    • Journal Title

      Inorg.Chem.

      Volume: Vol.50 Issue: 22 Pages: 11729-11735

    • DOI

      10.1021/ic2017165

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Salt has a biphasic effect on the higher-order structure of a DNA-protamine complex2011

    • Author(s)
      Naiko Makita
    • Journal Title

      J.Phys.Chem.B

      Volume: 115 Pages: 4453-4459

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparative study of kinetics on DNA double-strand break induced byphoto-andgamma-Irradiation:Protective effect of water-soluble flavonoids2010

    • Author(s)
      Y.Yoshikawa, T.Mori,M.Suzuki, T.Imanaka, K.Yoshikawa
    • Journal Title

      Chem.Phys.Lett.

      Volume: 501 Pages: 146-151

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Comparative study of kinetics on DNA double-strand break induced by photo-and gamma-Irradiation : Protective effect of water-soluble flavonoids2010

    • Author(s)
      Yuko Yoshikawa
    • Journal Title

      Chem.Phys.Lett.

      Volume: 501 Pages: 146-151

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Single molecule real-time observation of DNA interacting with dinuclear platinum antitumordrugs2012

    • Author(s)
      Yuko Yoshikawa
    • Organizer
      XXIInd International Symposium on Medicinal Chemistry
    • Place of Presentation
      Berlin(Germany)
    • Year and Date
      2012-09-03
    • Related Report
      2013 Final Research Report
  • [Presentation] Direct observation of large-scale conformational transitionin megabase-size DNA2011

    • Author(s)
      Yuko Yoshikawa
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2011-12-13
    • Related Report
      2013 Final Research Report
  • [Presentation] Direct observation of large-scale conformational transition in megabase-size DNA2011

    • Author(s)
      Yuko Yoshikawa
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜神奈川県
    • Year and Date
      2011-12-13
    • Related Report
      2011 Annual Research Report
  • [Presentation] Real-time observation of platinum anticancer drug-DNA interactions at the single-molecule level2011

    • Author(s)
      Yuko Yoshikawa
    • Organizer
      12th Conference on Methods and Applications of Fluorescence Spectroscopy,Imaging and Probes
    • Place of Presentation
      Strasbourg(France)
    • Year and Date
      2011-09-11
    • Related Report
      2013 Final Research Report
  • [Presentation] Real-time observation of platinum anticancer drug-DNA interactions at the single-molecule level2011

    • Author(s)
      Yuko Yoshikawa
    • Organizer
      12th Conference on Methods and Applications of Fluorescence Spectroscopy, Imaging and Probes
    • Place of Presentation
      Strasbourg FRANCE
    • Year and Date
      2011-09-11
    • Related Report
      2011 Annual Research Report
  • [Presentation] Single DNA Observation to Evaluate the Kinetics of Double-Strand Break2010

    • Author(s)
      Yuko Yoshikawa
    • Organizer
      ICS/JSPS Joint Seminar : Confinement of DNAs and Biofilaments
    • Place of Presentation
      Strasbourg, (France)
    • Year and Date
      2010-12-21
    • Related Report
      2010 Annual Research Report
  • [Presentation] 抗がん剤-DNA相互作用のリアルタイム計測:単一分子観察法の活用2010

    • Author(s)
      吉川祐子
    • Organizer
      日本環境変異原学会第39回大会
    • Place of Presentation
      つくば国際会議場(茨城県)
    • Year and Date
      2010-11-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] 光およびガンマ線によるDNA二重鎖切断の定量解析:水溶性フラボノイドによる保護作用2010

    • Author(s)
      吉川祐子
    • Organizer
      日本放射線影響学会第53回大会
    • Place of Presentation
      京都テルサ(京都府)
    • Year and Date
      2010-10-20
    • Related Report
      2013 Final Research Report 2010 Annual Research Report
  • [Presentation] Higher Order Structure of Giant DNA and Radiosensitivity2010

    • Author(s)
      Yuko Yoshikawa
    • Organizer
      The 1421st Biological Symposium
    • Place of Presentation
      国立遺伝研(静岡県)
    • Year and Date
      2010-04-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] Single molecule real-time observation of DNA interacting with dinuclear platinum antitumor drugs

    • Author(s)
      Yuko Yoshikawa
    • Organizer
      XXIInd International Symposium on Medicinal Chemistry
    • Place of Presentation
      Berlin (Germany)
    • Related Report
      2012 Annual Research Report
  • [Presentation] キラルなポリアミン類によるゲノムDNA分子の高次構造制御:キラル認識に基づく凝縮能の違い

    • Author(s)
      吉川祐子
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡マリンメッセ、福岡県
    • Related Report
      2012 Annual Research Report
  • [Remarks] 環境バイオテクノロジー研究室

    • URL

      http://www.ritsumei.ac.jp/lifescience/skbiot/imanaka/HPtop.html

    • Related Report
      2012 Annual Research Report

URL: 

Published: 2010-08-23   Modified: 2019-07-29  

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