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Detecting evolutionary responses of invasion species through determining the whole genome sequences.

Research Project

Project/Area Number 22657004
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Ecology/Environment
Research InstitutionTohoku University

Principal Investigator

KAWATA Masakado  東北大学, 大学院・生命科学研究科, 教授 (90204734)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥3,420,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥420,000)
Fiscal Year 2011: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2010: ¥1,600,000 (Direct Cost: ¥1,600,000)
Keywords侵略外来種 / アノールトカゲ / 小笠原 / 進化 / 全ゲノム解読 / 侵入外来種 / 進化的応答 / Anolis / ゲノム / 形態
Research Abstract

For examining the evolutionary response of Anolis calorliensis after the invasion of Ogasawara Island more then 40 years ago, we determined the whole sequences of 16 individuals in Tchitijima Island and 8 individuals in Florida using SOLiD sequencer. At the present, we completed the assemble of the fragment sequences and examined the nucleotide diversity of LGb and LGh chromosomes. The results showed that the nucleotide diversity of individuals in Tchitijima Island was much larger than those in Florida.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (32 results)

All 2012 2011 2010

All Journal Article (18 results) (of which Peer Reviewed: 18 results) Presentation (14 results)

  • [Journal Article] Habitat variability correlates with duplicate content of Drosophila genomes2012

    • Author(s)
      Makino, T. and Kawata, M.
    • Journal Title

      Molecular Biology and Evolution

      Volume: (in press)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Evolution of vertebrate tissues driven by differential modes of gene duplication2012

    • Author(s)
      Satake, M., Kawata, M., McLysaght, A. and Makino, T
    • Journal Title

      DNA Research

      Volume: (in press)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Shifts in morphology and diet of non-native sticklebacks introduced into Japanese crater lakes2012

    • Author(s)
      Adachi T, Ishikawa A, Mori S, Makino W, Kume M, Kawata M, Kitano J
    • Journal Title

      Ecology and Evolution

      Volume: (In press) Issue: 6 Pages: 1083-1098

    • DOI

      10.1002/ece3.234

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mammalian X Chromosome Inactivation evolved as a dosage compensation mechanism for dosage-sensitive genes on the X chromosome2012

    • Author(s)
      Pessia, E., Makino, T., Bailly-Bechet, M., McLysaght, A., and Marais, G. A. B
    • Journal Title

      PNAS

      Volume: 109 Pages: 5348-5351

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Comprehensive Primer Design for Analysis of Population Genetics in Non-Sequenced Organisms2012

    • Author(s)
      Tezuka, A. N. Matsushima, Y. Nemoto, H. D. Akashi, M. Kawata and T. Makino
    • Journal Title

      PLoS ONE

      Volume: 7(2)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Optimal feeding under stoichiometric constraints : A model of compensatory feeding with functional response2012

    • Author(s)
      Suzuki-Ohno, Y., M. Kawata, and J. Urabe
    • Journal Title

      Oikos

      Volume: 121 Pages: 569-578

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Comprehensive Primer Design for Analysis of Population Genetics in Non-Sequenced Organisms2012

    • Author(s)
      Tezuka, A.N.Matsushima, Y.Nemoto, H.D.Akashi, M.Kawata, T.Makino
    • Journal Title

      PLoS ONE

      Volume: 7 Issue: 2 Pages: e32314-e32314

    • DOI

      10.1371/journal.pone.0032314

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolution of vertebratetissues driven by differential modes of gene duplication2012

    • Author(s)
      Satake, M., Kawata, M., McLysaght, A. andMakino, T.
    • Journal Title

      DNA Research

      Volume: 19 Issue: 4 Pages: 305-316

    • DOI

      10.1093/dnares/dss012

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Divergence in Sex Steroid Hormone Signaling between Sympatric Species of Japanese Threespine Stickleback.2011

    • Author(s)
      Kitano, J., Y. Kawagishi, S. Mori., C. L. Peichel., T. Makino, M. Kawata, M. Kusakabe
    • Journal Title

      PLoS ONE

      Volume: 6(12)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] The long-term consequences of hybridization between the two Daphnia species2011

    • Author(s)
      Ishida, S , A. Takahashi , N. Matsushima , J. Yokoyama , W. Makino , J. Urabe and M. Kawata
    • Journal Title

      D. galeata and D. dentifera, in mature habitats. BMC Evolutionary Biology

      Volume: 11 Pages: 209-209

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phenotypic and genetic differences in a perennial herb across a natural gradient of CO2 concentration.2011

    • Author(s)
      Nakamura, I., Y. Onoda, N. Matsushima, J. Yokoyama, M. Kawata and K. Hikosaka
    • Journal Title

      Oecologia

      Volume: 165 Pages: 809-818

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] The MC1R gene in the guppy (Poecilia reticulata): Genotypic and phenotypic polymorphisms2011

    • Author(s)
      Tezuka, A, H. Yamamoto, J. Yokoyama, c. van Oosterhout, and M. Kawata
    • Journal Title

      BMC Research Notes

      Volume: 4 Pages: 31-31

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Effects of evolutionary changes in prey use on the relationship between food web complexity and stability2011

    • Author(s)
      Yamaguchi, W. Kondoh, M and M. Kawata
    • Journal Title

      Population Ecology

      Volume: 53 Pages: 59-72

    • NAID

      10027622265

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Adaptive divergence in the thyroid hormone signaling pathway in the stickleback radiation.2010

    • Author(s)
      Kitano, J., Lema, S. C., Luckenbach, J. A., Mori, S., Kawagishi, Y., Kusakabe, M., Swanson, P., and Peichel, C. L.
    • Journal Title

      Current Biology

      Volume: 20 Issue: 23 Pages: 2124-2130

    • DOI

      10.1016/j.cub.2010.10.050

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Evolution of gene regulatory networks by fluctuating selection and intrinsic constraints2010

    • Author(s)
      Tsuda, E. M. and M. Kawata
    • Journal Title

      PLoS Computational Biology

      Volume: 6(8)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Why is adaptation prevented at ecological margins? New insights from individual-based simulations.2010

    • Author(s)
      Bridle, J. R., J. Polechova, M. Kawata, R. K. Butlin
    • Journal Title

      Ecology Letters

      Volume: 13 Pages: 485-494

    • Related Report
      2011 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Duplicability of self-interacting human genes2010

    • Author(s)
      Perez-Bercoff A, Makino T and McLysaght A.
    • Journal Title

      BMC Evolutionary Biology

      Volume: 10 Pages: 160-160

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ohnologs in the human genome are dosage balanced and frequently associated with disease2010

    • Author(s)
      Makino T and McLysaght A.
    • Journal Title

      PNAS

      Volume: 107(20) Pages: 9270-9274

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Presentation] Genetic bases for adaptation to different thermal environment in Cuban Anolis Lizards.: EAFES5.2012

    • Author(s)
      Akashi, H., Cadiz Diaz, A., Makino, T., and Kawata, M
    • Organizer
      日本生態学会第59回大会
    • Place of Presentation
      龍谷大学
    • Year and Date
      2012-03-19
    • Related Report
      2011 Final Research Report
  • [Presentation] Selection for expression level detected by the interspecific comparison of cis-reguratory sequences2012

    • Author(s)
      Sato, M. P., Makino, T., Suzuki-Ohno, Y., Iwasaki, W. M., Kawata, M
    • Organizer
      EAFES5
    • Place of Presentation
      龍谷大学
    • Year and Date
      2012-03-19
    • Related Report
      2011 Final Research Report
  • [Presentation] Selection and drift in the population divergence of color polymorphism2012

    • Author(s)
      Takahashi, Y., Nagata, N. and Kawata, M
    • Organizer
      EAFES5
    • Place of Presentation
      龍谷大学
    • Year and Date
      2012-03-19
    • Related Report
      2011 Final Research Report
  • [Presentation] The effect of LWS opsin genotypes on color sensitivity and female preference.2012

    • Author(s)
      Sakai, Y., Kaizu, T., Ohtsuki, H., Tezuka, A., Kasagi, K., Kawamura, S. and Kawata, M
    • Organizer
      EAFES5
    • Place of Presentation
      龍谷大学
    • Year and Date
      2012-03-19
    • Related Report
      2011 Final Research Report
  • [Presentation] Relationship between duplicated gene and environmental adaptation in mammalia.: EAFES52012

    • Author(s)
      Tamate, S., Kawata, M. Makino, T
    • Organizer
      日本生態学会第59回大会
    • Place of Presentation
      龍谷大学
    • Year and Date
      2012-03-19
    • Related Report
      2011 Final Research Report
  • [Presentation] Relative importance of range expansion, speciation and niche differences on regional species diversity in the trunk-ground Anolis lizards in Cuba.: EAFES52012

    • Author(s)
      Cadis Diaz, A., Nagata, N., Diaz Beltran, L. M., Echenique-Diaz, L. M., Akashi, H., Makino, T., Kawata, M
    • Organizer
      日本生態学会第59回大会
    • Place of Presentation
      龍谷大学
    • Year and Date
      2012-03-19
    • Related Report
      2011 Final Research Report
  • [Presentation] Phenotypic and ecological shifts in introduced crater lake stickleback populations : EAFES52012

    • Author(s)
      Adachi, T., Ishikawa, A., Mori, S., Makino, W., Kume, M., Kawata, M., Kitano, J
    • Organizer
      日本生態学会第59回大会
    • Place of Presentation
      龍谷大学
    • Year and Date
      2012-03-18
    • Related Report
      2011 Final Research Report
  • [Presentation] 適応進化を制限する遺伝的機構と生物多様性[シンポジウム]2011

    • Author(s)
      河田雅圭
    • Organizer
      日本生態学会第58回全国大会
    • Place of Presentation
      札幌
    • Related Report
      2011 Final Research Report
  • [Presentation] 多様な生息地への適応を制限するゲノム構造[シンポジウム]2011

    • Author(s)
      牧野能士, 河田雅圭
    • Organizer
      日本生態学会第58回全国大会
    • Place of Presentation
      札幌
    • Related Report
      2011 Final Research Report
  • [Presentation] カシノナガキクイムシの行動モデルによるナラ枯れの感染拡大予測[口頭発表] 影響2011

    • Author(s)
      大野(鈴木)ゆかり, 今廣佐和子, 河田雅圭, 中静透
    • Organizer
      日本生態学会第58回全国大会
    • Place of Presentation
      札幌
    • Related Report
      2011 Final Research Report
  • [Presentation] 自然選択がショウジョウバエの転写調節領域進化に与える影響2011

    • Author(s)
      佐藤光彦, 牧野能士, 大野(鈴木)ゆかり, 岩嵜航, 河田雅圭
    • Organizer
      日本生態学会第58回全国大会
    • Place of Presentation
      札幌
    • Related Report
      2011 Final Research Report
  • [Presentation] 環境変化で出現する新奇形質:遺伝子制御ネットワークの隠蔽変異が適応進化を促進2011

    • Author(s)
      岩嵜航, 津田真樹, 河田雅圭
    • Organizer
      日本生態学会第58回全国大会
    • Place of Presentation
      札幌
    • Related Report
      2011 Final Research Report
  • [Presentation] イトヨにおける新規環境への急速適応[口頭発表]2011

    • Author(s)
      安達竜也, 森誠一, 牧野渡, 河田雅圭, 北野潤
    • Organizer
      日本生態学会第58回全国大会
    • Place of Presentation
      札幌
    • Related Report
      2011 Final Research Report
  • [Presentation] 比較ゲノム解析による網羅的プライマーデザイン[企画集会]2011

    • Author(s)
      牧野能士
    • Organizer
      日本生態学会第58回全国大会
    • Place of Presentation
      札幌
    • Related Report
      2011 Final Research Report

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Published: 2010-08-23   Modified: 2016-04-21  

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