Detecting evolutionary responses of invasion species through determining the whole genome sequences.

• Project/Area Number: 22657004
• Research Category: Grant-in-Aid for Challenging Exploratory Research
• Allocation Type: Single-year Grants
• Research Field: Ecology/Environment
• Research Institution: Tohoku University
• Principal Investigator: KAWATA Masakado 東北大学, 大学院・生命科学研究科, 教授 (90204734)
• Project Period (FY): 2010 – 2011
• Project Status: Completed (Fiscal Year 2011)
• Budget Amount: ¥3,420,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥420,000); Fiscal Year 2011: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000); Fiscal Year 2010: ¥1,600,000 (Direct Cost: ¥1,600,000)
• Keywords: 侵略外来種 / アノールトカゲ / 小笠原 / 進化 / 全ゲノム解読 / 侵入外来種 / 進化的応答 / Anolis / ゲノム / 形態

Research Abstract

For examining the evolutionary response of Anolis calorliensis after the invasion of Ogasawara Island more then 40 years ago, we determined the whole sequences of 16 individuals in Tchitijima Island and 8 individuals in Florida using SOLiD sequencer. At the present, we completed the assemble of the fragment sequences and examined the nucleotide diversity of LGb and LGh chromosomes. The results showed that the nucleotide diversity of individuals in Tchitijima Island was much larger than those in Florida.

Research Products

• [Journal Article] Habitat variability correlates with duplicate content of Drosophila genomes (2012)
  • Author(s): Makino, T. and Kawata, M.
  • Journal Title: Molecular Biology and Evolution Volume: (in press)
  • Peer Reviewed
• [Journal Article] Evolution of vertebrate tissues driven by differential modes of gene duplication (2012)
  • Author(s): Satake, M., Kawata, M., McLysaght, A. and Makino, T
  • Journal Title: DNA Research Volume: (in press)
  • Peer Reviewed
• [Journal Article] Shifts in morphology and diet of non-native sticklebacks introduced into Japanese crater lakes (2012)
  • Author(s): Adachi T, Ishikawa A, Mori S, Makino W, Kume M, Kawata M, Kitano J
  • Journal Title: Ecology and Evolution Volume: (In press) Issue: 6 Pages: 1083-1098
  • DOI: 10.1002/ece3.234
  • Peer Reviewed
• [Journal Article] Mammalian X Chromosome Inactivation evolved as a dosage compensation mechanism for dosage-sensitive genes on the X chromosome (2012)
  • Author(s): Pessia, E., Makino, T., Bailly-Bechet, M., McLysaght, A., and Marais, G. A. B
  • Journal Title: PNAS Volume: 109 Pages: 5348-5351
  • Peer Reviewed
• [Journal Article] Comprehensive Primer Design for Analysis of Population Genetics in Non-Sequenced Organisms (2012)
  • Author(s): Tezuka, A. N. Matsushima, Y. Nemoto, H. D. Akashi, M. Kawata and T. Makino
  • Journal Title: PLoS ONE Volume: 7(2)
  • Peer Reviewed
• [Journal Article] Optimal feeding under stoichiometric constraints : A model of compensatory feeding with functional response (2012)
  • Author(s): Suzuki-Ohno, Y., M. Kawata, and J. Urabe
  • Journal Title: Oikos Volume: 121 Pages: 569-578
  • Peer Reviewed
• [Journal Article] Comprehensive Primer Design for Analysis of Population Genetics in Non-Sequenced Organisms (2012)
  • Author(s): Tezuka, A.N.Matsushima, Y.Nemoto, H.D.Akashi, M.Kawata, T.Makino
  • Journal Title: PLoS ONE Volume: 7 Issue: 2 Pages: e32314-e32314
  • DOI: 10.1371/journal.pone.0032314
  • Peer Reviewed
• [Journal Article] Evolution of vertebratetissues driven by differential modes of gene duplication (2012)
  • Author(s): Satake, M., Kawata, M., McLysaght, A. andMakino, T.
  • Journal Title: DNA Research Volume: 19 Issue: 4 Pages: 305-316
  • DOI: 10.1093/dnares/dss012
  • Peer Reviewed
• [Journal Article] Divergence in Sex Steroid Hormone Signaling between Sympatric Species of Japanese Threespine Stickleback. (2011)
  • Author(s): Kitano, J., Y. Kawagishi, S. Mori., C. L. Peichel., T. Makino, M. Kawata, M. Kusakabe
  • Journal Title: PLoS ONE Volume: 6(12)
  • Peer Reviewed
• [Journal Article] The long-term consequences of hybridization between the two Daphnia species (2011)
  • Author(s): Ishida, S , A. Takahashi , N. Matsushima , J. Yokoyama , W. Makino , J. Urabe and M. Kawata
  • Journal Title: D. galeata and D. dentifera, in mature habitats. BMC Evolutionary Biology Volume: 11 Pages: 209-209
  • Peer Reviewed
• [Journal Article] Phenotypic and genetic differences in a perennial herb across a natural gradient of CO2 concentration. (2011)
  • Author(s): Nakamura, I., Y. Onoda, N. Matsushima, J. Yokoyama, M. Kawata and K. Hikosaka
  • Journal Title: Oecologia Volume: 165 Pages: 809-818
  • Peer Reviewed
• [Journal Article] The MC1R gene in the guppy (Poecilia reticulata): Genotypic and phenotypic polymorphisms (2011)
  • Author(s): Tezuka, A, H. Yamamoto, J. Yokoyama, c. van Oosterhout, and M. Kawata
  • Journal Title: BMC Research Notes Volume: 4 Pages: 31-31
  • Peer Reviewed
• [Journal Article] Effects of evolutionary changes in prey use on the relationship between food web complexity and stability (2011)
  • Author(s): Yamaguchi, W. Kondoh, M and M. Kawata
  • Journal Title: Population Ecology Volume: 53 Pages: 59-72
  • NAID: 10027622265
  • Peer Reviewed
• [Journal Article] Adaptive divergence in the thyroid hormone signaling pathway in the stickleback radiation. (2010)
  • Author(s): Kitano, J., Lema, S. C., Luckenbach, J. A., Mori, S., Kawagishi, Y., Kusakabe, M., Swanson, P., and Peichel, C. L.
  • Journal Title: Current Biology Volume: 20 Issue: 23 Pages: 2124-2130
  • DOI: 10.1016/j.cub.2010.10.050
  • Peer Reviewed
• [Journal Article] Evolution of gene regulatory networks by fluctuating selection and intrinsic constraints (2010)
  • Author(s): Tsuda, E. M. and M. Kawata
  • Journal Title: PLoS Computational Biology Volume: 6(8)
  • Peer Reviewed
• [Journal Article] Why is adaptation prevented at ecological margins? New insights from individual-based simulations. (2010)
  • Author(s): Bridle, J. R., J. Polechova, M. Kawata, R. K. Butlin
  • Journal Title: Ecology Letters Volume: 13 Pages: 485-494
  • Peer Reviewed
• [Journal Article] Duplicability of self-interacting human genes (2010)
  • Author(s): Perez-Bercoff A, Makino T and McLysaght A.
  • Journal Title: BMC Evolutionary Biology Volume: 10 Pages: 160-160
  • Peer Reviewed
• [Journal Article] Ohnologs in the human genome are dosage balanced and frequently associated with disease (2010)
  • Author(s): Makino T and McLysaght A.
  • Journal Title: PNAS Volume: 107(20) Pages: 9270-9274
  • Peer Reviewed
• [Presentation] Genetic bases for adaptation to different thermal environment in Cuban Anolis Lizards.: EAFES5. (2012)
  • Author(s): Akashi, H., Cadiz Diaz, A., Makino, T., and Kawata, M
  • Organizer: 日本生態学会第59回大会
  • Place of Presentation: 龍谷大学
  • Year and Date: 2012-03-19
• [Presentation] Selection for expression level detected by the interspecific comparison of cis-reguratory sequences (2012)
  • Author(s): Sato, M. P., Makino, T., Suzuki-Ohno, Y., Iwasaki, W. M., Kawata, M
  • Organizer: EAFES5
  • Place of Presentation: 龍谷大学
  • Year and Date: 2012-03-19
• [Presentation] Selection and drift in the population divergence of color polymorphism (2012)
  • Author(s): Takahashi, Y., Nagata, N. and Kawata, M
  • Organizer: EAFES5
  • Place of Presentation: 龍谷大学
  • Year and Date: 2012-03-19
• [Presentation] The effect of LWS opsin genotypes on color sensitivity and female preference. (2012)
  • Author(s): Sakai, Y., Kaizu, T., Ohtsuki, H., Tezuka, A., Kasagi, K., Kawamura, S. and Kawata, M
  • Organizer: EAFES5
  • Place of Presentation: 龍谷大学
  • Year and Date: 2012-03-19
• [Presentation] Relationship between duplicated gene and environmental adaptation in mammalia.: EAFES5 (2012)
  • Author(s): Tamate, S., Kawata, M. Makino, T
  • Organizer: 日本生態学会第59回大会
  • Place of Presentation: 龍谷大学
  • Year and Date: 2012-03-19
• [Presentation] Relative importance of range expansion, speciation and niche differences on regional species diversity in the trunk-ground Anolis lizards in Cuba.: EAFES5 (2012)
  • Author(s): Cadis Diaz, A., Nagata, N., Diaz Beltran, L. M., Echenique-Diaz, L. M., Akashi, H., Makino, T., Kawata, M
  • Organizer: 日本生態学会第59回大会
  • Place of Presentation: 龍谷大学
  • Year and Date: 2012-03-19
• [Presentation] Phenotypic and ecological shifts in introduced crater lake stickleback populations : EAFES5 (2012)
  • Author(s): Adachi, T., Ishikawa, A., Mori, S., Makino, W., Kume, M., Kawata, M., Kitano, J
  • Organizer: 日本生態学会第59回大会
  • Place of Presentation: 龍谷大学
  • Year and Date: 2012-03-18
• [Presentation] 適応進化を制限する遺伝的機構と生物多様性[シンポジウム] (2011)
  • Author(s): 河田雅圭
  • Organizer: 日本生態学会第58回全国大会
  • Place of Presentation: 札幌
• [Presentation] 多様な生息地への適応を制限するゲノム構造[シンポジウム] (2011)
  • Author(s): 牧野能士, 河田雅圭
  • Organizer: 日本生態学会第58回全国大会
  • Place of Presentation: 札幌
• [Presentation] カシノナガキクイムシの行動モデルによるナラ枯れの感染拡大予測[口頭発表] 影響 (2011)
  • Author(s): 大野(鈴木)ゆかり, 今廣佐和子, 河田雅圭, 中静透
  • Organizer: 日本生態学会第58回全国大会
  • Place of Presentation: 札幌
• [Presentation] 自然選択がショウジョウバエの転写調節領域進化に与える影響 (2011)
  • Author(s): 佐藤光彦, 牧野能士, 大野(鈴木)ゆかり, 岩嵜航, 河田雅圭
  • Organizer: 日本生態学会第58回全国大会
  • Place of Presentation: 札幌
• [Presentation] 環境変化で出現する新奇形質:遺伝子制御ネットワークの隠蔽変異が適応進化を促進 (2011)
  • Author(s): 岩嵜航, 津田真樹, 河田雅圭
  • Organizer: 日本生態学会第58回全国大会
  • Place of Presentation: 札幌
• [Presentation] イトヨにおける新規環境への急速適応[口頭発表] (2011)
  • Author(s): 安達竜也, 森誠一, 牧野渡, 河田雅圭, 北野潤
  • Organizer: 日本生態学会第58回全国大会
  • Place of Presentation: 札幌
• [Presentation] 比較ゲノム解析による網羅的プライマーデザイン[企画集会] (2011)
  • Author(s): 牧野能士
  • Organizer: 日本生態学会第58回全国大会
  • Place of Presentation: 札幌