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Identification of antigen of IgA and Membranous Nephropathy by On -site proteomics

Research Project

Project/Area Number 22659165
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Kidney internal medicine
Research InstitutionNiigata University

Principal Investigator

XU Bo  新潟大学, 医歯学総合研究科, 研究員 (70463982)

Co-Investigator(Kenkyū-buntansha) YAMAMOTO Tadashi  新潟大学, 医歯学系, 教授 (30092737)
ZHANG Ying  新潟大学, 医歯学総合研究科, 研究員 (00529472)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥3,300,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2012: ¥520,000 (Direct Cost: ¥400,000、Indirect Cost: ¥120,000)
Fiscal Year 2011: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2010: ¥2,000,000 (Direct Cost: ¥2,000,000)
KeywordsIgA腎症 / 膜性腎症 / プロテオミクス / On-siteプロテオミクス
Research Abstract

Formation of immune complexes were recognized as key rule involved with IgA nephropathy and membranous nephropathy deeply, but it is still unclear in many cases of antigen of these diseases. In this study, 10 μm thickness sections of kidney biopsy samples were pretreated, and glomeruli were dissected by using laser micro dissection (LMD). Peptides were extracted from collected glomeruli followed by On-Site proteomics method followed LC-MS/MS analysis. Proteins with significant changesbetween the IgA・membranous nephropathy and normal glomerulus were analyzed by bioinformatics tool and pathway analysis of diseases to be explored their pathogenesis of IgA・membranous nephropathy

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (33 results)

All 2013 2012 2011 2010 Other

All Journal Article (12 results) (of which Peer Reviewed: 12 results) Presentation (20 results) Remarks (1 results)

  • [Journal Article] Extracellular heat shock protein A9 is a novel interaction partner of podoplanin in oral squamous cell carcinoma cells2013

    • Author(s)
      Masayuki Tsuneki
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 434 Issue: 1 Pages: 124-130

    • DOI

      10.1016/j.bbrc.2013.03.057

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Profiling of kidney vascular endothelial cell plasma membrane proteins by liquid chromatography-tandem mass spectrometry2012

    • Author(s)
      Liu Z, Xu B, Nameta M, Zhang Y, Magdeldin S, Yoshida Y, Yamamoto K, Fujinaka H, Yaoita E, Tasaki M, Nakagawa Y, Saito K, Takahashi K, Yamamoto T
    • Journal Title

      Clin Exp Nephrol

      Volume: 掲載予定 Issue: 3 Pages: 327-337

    • DOI

      10.1007/s10157-012-0708-1

    • NAID

      10031184238

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Murine colon proteome and characterization of the protein pathways.2012

    • Author(s)
      Magdeldin S
    • Journal Title

      BioData Min.

      Volume: 5 Issue: 1 Pages: 11-11

    • DOI

      10.1186/1756-0381-5-11

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Extensive proteomic profiling of the secretome of European community acquired methicillin resistant Staphylococcus aureus clone2012

    • Author(s)
      Enany S, Yoshida Y, Magdeldin S, Zhang Y, Xu B, Yamamoto T
    • Journal Title

      Peptides

      Volume: 37 Issue: 1 Pages: 128-37

    • DOI

      10.1016/j.peptides.2012.06.011

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Proteomic approach to human kidney glomerulus prepared by laser microdissection from frozen biopsy specimens: exploration of proteome after removal of blood-derived proteins2012

    • Author(s)
      Yoshida Y, Nameta M, Kuwano M, Zhang Y, Bo X, Magdeldin S, Cui Z, Fujinaka H, Yaoita E, Tomonaga T, Yamamoto T
    • Journal Title

      Proteomics Clin Appl

      Volume: 6 Issue: 7-8 Pages: 412-417

    • DOI

      10.1002/prca.201200016

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] "All and None" Refining Strategy; Fishing Your Correct Protein from Proteomics Ocean2011

    • Author(s)
      Magdeldin S, Yoshida Y, Zhang Y, Xu B, Yaoita E, Yamamoto T
    • Journal Title

      J Proteomics Bioinform

      Volume: 4 Pages: 123-124

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Comparison of human glomerulus proteomic profiles obtained from low quantities of samples by different mass spectrometry with the comprehe nsive database2011

    • Author(s)
      Ying Zhang
    • Journal Title

      Proteome Science

      Volume: VOL.9 Issue: 1 Pages: 47-57

    • DOI

      10.1186/1477-5956-9-47

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Usage of electrostatic eliminator reduces human keratin contamination significantly in gel-based proteomics analysis2011

    • Author(s)
      許波
    • Journal Title

      Journal of Proteomics

      Volume: VOL.74 Issue: 7 Pages: 1022-1029

    • DOI

      10.1016/j.jprot.2011.03.001

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Novel expression of claudin-5 in glomerular podocytes2011

    • Author(s)
      Koda R, Zhao L, Yaoita E, Yoshida Y, Tsukita S, Tamura A, Nameta M, Zhang Y, Fujinaka H, Magdeldin S, Xu B, Narita I, Yamamoto T
    • Journal Title

      Cell Tissue Res

      Volume: 343 Issue: 3 Pages: 637

    • DOI

      10.1007/s00441-010-1117-y

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] プロテオミクスの試料調製2010

    • Author(s)
      許波
    • Journal Title

      日本腎臓学会誌

      Volume: 52 Pages: 495-498

    • NAID

      10026409300

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparison of two dimensional electrophoresis mouse colon proteomes before and after knocking out Aquaporin 82010

    • Author(s)
      Magdeldin S, Li H, Yoshida Y, Enany S, Zhang YXB, Fujinaka H, Yaoita E, Yamamoto T.
    • Journal Title

      Journal of Proteomics

      Volume: 73 Pages: 2031-2040

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Usage of electrostatic eliminator reduces human keratin contamination significantly in gel-based proteomics analysis.

    • Author(s)
      Bo Xu, Ying Zhang, Zongjiang Zhao, Yutaka Yoshida, Sameh Magdeldin, Hidehiko Fujinaka, Tamer Ahmed Ismail, Eishin Yaoita, Tadashi Yamamoto.
    • Journal Title

      Journal of Proteomics

      Volume: In Press

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Proteomics analysis of laser microdissected FFPE glomerular sections from human IgA nephropathy biopsy specimens2012

    • Author(s)
      Xu B, Shimada S, Zhang Y, Yoshida Y, Liu Z, Magdeldin S, Fujinaka H, Yaoita E, Yamamoto T
    • Organizer
      第11回国際ヒトプロテオーム機構学術集会
    • Place of Presentation
      ボス トン(アメリカ合衆国)
    • Related Report
      2012 Final Research Report
  • [Presentation] Proteomics analysis of laser microdissected FFPE glomerular sections from human IgA nephropathy biopsy specimens.2012

    • Author(s)
      Xu Bo
    • Organizer
      11th Annual World Congress of Human Proteome Organization (HUPO)
    • Place of Presentation
      BOSTON, USA
    • Related Report
      2012 Annual Research Report
  • [Presentation] Comparison of on-site proteomics study on laser microdissected FFPE and frozen human glomerulus tissues2011

    • Author(s)
      Xu B, Shimada S, Zhang Y, Yamamoto T
    • Organizer
      10th Annual World Congress of Human Proteome Organization (HUPO)
    • Place of Presentation
      Room K, Geneva Palexpo, Geneva, Switzerland
    • Year and Date
      2011-09-06
    • Related Report
      2011 Annual Research Report
  • [Presentation] Proteome research of murine liver tissues of NASH model mouse2011

    • Author(s)
      Xu B, Zhang Y, Azlina E, Yamamoto T., et al
    • Organizer
      9th Japan Human Proteomics Organization (JHUPO) Confernce
    • Place of Presentation
      Snow Hall A, Toki Messe, Niigata, Japan
    • Year and Date
      2011-07-29
    • Related Report
      2011 Annual Research Report
  • [Presentation] Proteomics results of small FFPE rat cortex tissues treated by 3 methods2011

    • Author(s)
      Xu B, Zhang Y, Yaoita E, Yamamot T
    • Organizer
      9th Japan Human Proteomics Organization (JHUPO) Confernce
    • Place of Presentation
      Snow Hall A, Toki Messe, Niigata, Japan
    • Year and Date
      2011-07-29
    • Related Report
      2011 Annual Research Report
  • [Presentation] Preparation of sample for proteomics research2011

    • Author(s)
      Xu B, Yoshida Y, Yamamoto T
    • Organizer
      9th Japan Human Proteomics Organization (JHUPO) Confernce
    • Place of Presentation
      Room 201, Toki Messe, Niigata(招待講演)
    • Year and Date
      2011-07-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] A VBA program for extracting keratin contamination from protecome analysis results2011

    • Author(s)
      Makiguchi T, Xu B, Yoshida Y, Yamamoto T
    • Organizer
      9th Japan Human Proteomics Organization (JHUPO) Confernce
    • Place of Presentation
      Snow Hall A, Toki Messe, Niigata, Japan
    • Year and Date
      2011-07-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] Processing tool works on data of identified proteins exported by ions search engine2011

    • Author(s)
      Ikoma T,Xu B, Yamamoto T
    • Organizer
      9th Japan Human Proteomics Organization (JHUPO) Confernce
    • Place of Presentation
      Snow Hall A, Toki Messe, Niigata, Japan
    • Year and Date
      2011-07-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] Proteomic mapping oT kidney and liver endotheliai cell surface proteins2011

    • Author(s)
      Liu Z, Xu B, Zhang Y, Yoshida Y, Yamamoto T
    • Organizer
      9th Japan Human Proteomics Organization (JHUPO) Confernce
    • Place of Presentation
      Snow Hall A, Toki Messe, Niigata, Japan
    • Year and Date
      2011-07-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] Comparison of on-site proteomics study on laser microdissected FFPE and frozen human glomerulus tissues2011

    • Author(s)
      Xu B, Shimada S, Zhang Y, Magdeldin S, Fujinaka H, Yoshida Y, Yaoita Y, Yamamoto T
    • Organizer
      第10回国際ヒトプロテオーム機構学術集会
    • Place of Presentation
      ジュネーブ(スイス連邦)
    • Related Report
      2012 Final Research Report
  • [Presentation] Proteomics results of small FFPE rat cortex tissues treated by 3 methods2011

    • Author(s)
      Xu B, Zhang Y, Shimada S, Maddeldin S, Yoshida Y, Yaoita E, Yamamot T
    • Organizer
      日本プロテオーム学会2011年大会(第9回日本ヒトプロテオーム機構)
    • Place of Presentation
      新潟
    • Related Report
      2012 Final Research Report
  • [Presentation] Proteome research of murine liver tissues of NASH model mouse2011

    • Author(s)
      Xu B, Shimada S, Takamura M, Zhang Y, Azlina E, Magdeldin S, Yoshida Y, Yaoita E, Yamamoto T
    • Organizer
      日本プロテオーム学会2011年大会(第9回日本ヒトプロテオーム機構)
    • Place of Presentation
      新潟
    • Related Report
      2012 Final Research Report
  • [Presentation] Preparation of sample for proteomics research2011

    • Author(s)
      Xu B, Yoshida Y, Yamamoto T
    • Organizer
      日本プロテオーム学会2011年大会(第9回日本ヒトプロテオーム機構)
    • Place of Presentation
      新潟
    • Related Report
      2012 Final Research Report
  • [Presentation] Proteomics analysis on formalin-fixedparaffin-embedded human glomeruli using laser microdissection and on-site direct trypsin digestion2011

    • Author(s)
      Xu B, Shimada S, Zhang Y, Yoshida Y, Yaoita E, Morita T , Yamamoto T
    • Organizer
      第54回日本腎臓学会学術総会
    • Place of Presentation
      横浜
    • Related Report
      2012 Final Research Report
  • [Presentation] On-site Proteomics Study on Laser Microdissected Rat Renal Cortex and Human Glomerulus Tissues2010

    • Author(s)
      Bo Xu, Shuichiro Shimada, YingZhang, Sameh Magdaldin, Hideo Fujinaka Yutaka Yoshida, Eisin Yaoita, Tadashi Yamamoto.
    • Organizer
      2010 HUPO 9^<th> Annual World Congress
    • Place of Presentation
      Exhibition Hall 5,Sydney Convention and Exhibition Centre,NSW,Australia
    • Year and Date
      2010-09-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] Laser Microdissection法を用いたホルマリン固定標本のon-siteプロテオーム解析2010

    • Author(s)
      許波、嶋田修一郎、張螢、五十島美千子、吉田豊、矢尾板永信、森田俊、山本格
    • Organizer
      日本ヒトプロテオーム機構第8回大会
    • Place of Presentation
      インペリアホール・アメジスト&エメラルド、東京ベイホテル東急 1F
    • Year and Date
      2010-07-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] ホルマリン固定標本とLaser Microdissection法を用いたon-siteプロテオーム解析.;第53回日本腎臓学会.03-06-20.2010

    • Author(s)
      許波、嶋田修一郎、張螢、五十島美千子、吉田豊、矢尾板永信、山本格
    • Organizer
      第53回日本腎臓学会
    • Place of Presentation
      第6会場(神戸国際会議場502会議室)
    • Year and Date
      2010-06-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] On-site proteomics study on laser microdissected rat renal cortex and human glomerulus tissues2010

    • Author(s)
      Xu B, Shimada S, Zhang Y, Magdeldin S, Fujinaka H, Yoshida Y, Yaoita E, Yamamoto T
    • Organizer
      9th Annual World Congress of Human Proteome Organization (HUPO)
    • Place of Presentation
      シドニー(オーストラリア連邦)
    • Related Report
      2012 Final Research Report
  • [Presentation] Proteomics analysis on formalin-fixed paraffin-embedded tissue using laser microdissection and on-site direct trypsin digestion2010

    • Author(s)
      Xu B, Shimada S, Zhang Y, Ikashima M, Yoshida Y, Yaoita E, Morita T , Yamamoto T
    • Organizer
      第8回日本ヒトプロテオーム機構
    • Place of Presentation
      東京
    • Related Report
      2012 Final Research Report
  • [Presentation] Proteomics study of formalin fixed paraffin embedded rat kidney by laser microdissection2010

    • Author(s)
      Xu B, Shimada S, Zhang Y, Ikashima M, Yoshida Y, Yaoita E, Yamamoto T
    • Organizer
      第53回日本腎臓学会学術総会
    • Place of Presentation
      神戸
    • Related Report
      2012 Final Research Report
  • [Remarks]

    • URL

      http://hkupp.kir.jp

    • Related Report
      2012 Final Research Report

URL: 

Published: 2010-08-23   Modified: 2019-07-29  

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