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Protein crystallization on zeolites as substrate materials

Research Project

Project/Area Number 22770116
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Structural biochemistry
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

SUGAHARA Michihiro  独立行政法人理化学研究所, タンパク質結晶構造解析研究グループ, 研究員 (00415192)

Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2012: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2011: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2010: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
KeywordsX線結晶構造解析 / タンパク質結晶化 / ゼオライト / モレキュラーシーブ / ヘテロエピタキシャル / タンパク質 / 結晶化
Research Abstract

Protein crystallization is still a major bottleneck in structural biology. In order to overcome this difficulty, an advanced crystallization method using synthetic zeolite molecular sieves (MS) as hetero-epitaxic nucleants by which a directed crystal nucleation on the material surface occurred in a wide variety of proteins, has been developed in this study. A sparsematrix screening experiment in the presence of MS or MS-like compounds has been performed, showing a clear improvement in the success rate of protein crystallization as compared with the conventional screening. The results suggested that micro-porous, crystalline and metal-ion-binding materials promote nucleation of proteins.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (28 results)

All 2013 2012 2011 2010

All Journal Article (8 results) (of which Peer Reviewed: 6 results) Presentation (18 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Effect of Heavy Atoms on the Thermal Stability of α-Amylase from Aspergillus oryzae2013

    • Author(s)
      Michihiro Sugahara, Michiyo Takehira, Katsuhide Yutani
    • Journal Title

      PLoS ONE

      Volume: 8(2)

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A fiber-based crystal mounting technique for protein cryocrystallography2012

    • Author(s)
      Michihiro Sugahara
    • Journal Title

      J. Appl. Crystallogr.

      Volume: 45 Issue: 2 Pages: 362-366

    • DOI

      10.1107/s002188981200756x

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A fiber-based crystal mounting technique for protein cryocrystallography2012

    • Author(s)
      Michihiro Sugahara
    • Journal Title

      Journal of Applied Crystallography

      Volume: (搭載確定)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Protein crystallization with zeolite2011

    • Author(s)
      Michihiro Sugahara, Naoki Kunishima
    • Journal Title

      Acta Crystallogr.

      Volume: A67

    • URL

      http://journals.iucr.org/a/issues/2011/a1/00/a48538/a48538.pdf

    • Related Report
      2012 Final Research Report
  • [Journal Article] Packing Space Expansion of Protein Crystallization Screening with Synthetic Zeolite as a Heteroepitaxic Nucleant2011

    • Author(s)
      Michihiro Sugahara, Yuko Kageyama-Morikawa, Naoki Kunishima
    • Journal Title

      Crystal Growth & Design

      Volume: 11 Issue: 1 Pages: 110-120

    • DOI

      10.1021/cg100987g

    • Related Report
      2012 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Protein crystallization with zeolite2011

    • Author(s)
      Michihiro Sugahara
    • Journal Title

      Acta Crystallographica Section A

      Volume: 67

    • Related Report
      2011 Annual Research Report
  • [Journal Article] Autolabo: an automated system for ligand-soaking experiments with protein crystals2010

    • Author(s)
      Michihiro Sugahara, Katsumi Shimizu, Yukuhiko Asada, Hideki Fukunishi, Hirohumi Kodera, Takeshi Fujii, Eiji Osada, Takashi Kasazaki, Toshihumi Sawada, Hideyuki Chikusa, Kazuaki Kondo, Akira Yorihiro, Naoki Kunishima
    • Journal Title

      J. Appl. Crystallogr.

      Volume: 43 Issue: 4 Pages: 940-944

    • DOI

      10.1107/s0021889810018595

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Autolabo : an automated system for ligand-soaking experiments with protein crystals2010

    • Author(s)
      Michihiro Sugahara
    • Journal Title

      Journal of Applied Crystallography

      Volume: 43 Pages: 940-944

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] ゲルカプセル内でのタンパク質結晶化2012

    • Author(s)
      菅原道泰,国島直樹
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡,福岡
    • Year and Date
      2012-12-15
    • Related Report
      2012 Final Research Report
  • [Presentation] 回折実験のためのタンパク質結晶マウント法2012

    • Author(s)
      菅原道泰,国島直樹
    • Organizer
      平成24年度日本結晶学会年会
    • Place of Presentation
      東北大学,宮城
    • Year and Date
      2012-10-26
    • Related Report
      2012 Final Research Report
  • [Presentation] タンパク質X 線結晶構造解析のための結晶化テクニック2012

    • Author(s)
      菅原道泰,国島直樹
    • Organizer
      第12回日本蛋白質科学会
    • Place of Presentation
      名古屋国際会議場,名古屋
    • Year and Date
      2012-06-21
    • Related Report
      2012 Final Research Report
  • [Presentation] ゼオライトを用いたキシラナーゼの結晶化スクリーニング2012

    • Author(s)
      菅原道泰,国島直樹
    • Organizer
      日本化学会第92 春季年会
    • Place of Presentation
      慶應義塾大学,神奈川
    • Year and Date
      2012-03-25
    • Related Report
      2012 Final Research Report
  • [Presentation] ゼオライトを用いたキシラナーゼの結晶化スクリーニング2012

    • Author(s)
      菅原道泰
    • Organizer
      日本化学会第92春季年会
    • Place of Presentation
      慶応義塾大学(神奈川県)
    • Year and Date
      2012-03-25
    • Related Report
      2011 Annual Research Report
  • [Presentation] タンパク質X線結晶構造解析のための結晶化テクニック2012

    • Author(s)
      菅原道泰
    • Organizer
      第12回日本蛋白質科学会
    • Place of Presentation
      名古屋国際会議場,名古屋
    • Related Report
      2012 Annual Research Report
  • [Presentation] 回折実験のためのタンパク質結晶マウント法2012

    • Author(s)
      菅原道泰
    • Organizer
      平成24年度日本結晶学会年会
    • Place of Presentation
      東北大学,宮城
    • Related Report
      2012 Annual Research Report
  • [Presentation] ゲルカプセル内でのタンパク質結晶化2012

    • Author(s)
      菅原道泰
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡,福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] Protein crystallization screening with microporous synthetic zeolites Molecular Sieves2011

    • Author(s)
      Michihiro Sugahara
    • Organizer
      NHRI-RIKEN Short Seminar
    • Place of Presentation
      National Health Research Institute NHRI, Taiwan
    • Year and Date
      2011-02-14
    • Related Report
      2012 Final Research Report
  • [Presentation] Protein crystallization screening with microporous synthetic zeolites Molecular Sieves2011

    • Author(s)
      Michihiro Sugahara
    • Organizer
      NHRI-RIKEN Short seminar
    • Place of Presentation
      台湾、台北市
    • Year and Date
      2011-02-14
    • Related Report
      2010 Annual Research Report
  • [Presentation] Protein crystallization screening with microporous synthetic zeolites Molecular Sieves2011

    • Author(s)
      Michihiro Sugahara
    • Organizer
      Workshop on Structural Biology in Southern Taiwan through RIKEN PTP
    • Place of Presentation
      University Center for Bioscience and Biotechnology, National Cheng Kung University, Taiwan
    • Year and Date
      2011-02-13
    • Related Report
      2012 Final Research Report
  • [Presentation] Protein crystallization with zeolite2011

    • Author(s)
      Michihiro Sugahara,Naoki Kunishima
    • Organizer
      IUCr2011 (XXII Congress and General Assembly, International Union of Crystallography)
    • Place of Presentation
      Municipal Conference Centre,Spain
    • Related Report
      2012 Final Research Report
  • [Presentation] Protein crystallization with zeolite2011

    • Author(s)
      Michihiro Sugahara
    • Organizer
      XXII Congress and General Assembly, International Union of Crystallography (IUCr2011)
    • Place of Presentation
      Municipal Conference Centre(スペイン・マドリッド)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Protein crystallization screening with microporous synthetic zeolites Molecular Sieves2011

    • Author(s)
      Michihiro Sugahara
    • Organizer
      Workshop on Structural Biology in Southern Taiwwith RIKEN PTP
    • Place of Presentation
      台湾、台南市
    • Related Report
      2010 Annual Research Report
  • [Presentation] マイクロ孔ゼオライトを用いたタンパク質結晶化スクリーニング2010

    • Author(s)
      菅原道泰,国島直樹
    • Organizer
      日本結晶学会平成22 年度年会
    • Place of Presentation
      大阪大学コンベンションセンター,大阪
    • Year and Date
      2010-12-03
    • Related Report
      2012 Final Research Report
  • [Presentation] Protein crystallization with synthetic zeolite molecular sieves as hetero-epitaxic nucleants2010

    • Author(s)
      Michihiro Sugahara, Yuko Kageyama-Morikawa, Naoki Kunishima
    • Organizer
      Asian Crystallographic Association (AsCA) 2010
    • Place of Presentation
      BEXCO,Korea
    • Year and Date
      2010-11-02
    • Related Report
      2012 Final Research Report
  • [Presentation] Protein crystallization with synthetic zeolite molecular sieves as hetero-epitaxic nucleants2010

    • Author(s)
      Michihiro Sugahara
    • Organizer
      The 10th Conference of the Asian Crystallographic Association (AsCA 2010)
    • Place of Presentation
      韓国、釜山
    • Related Report
      2010 Annual Research Report
  • [Presentation] マイクロ孔ゼオライトを用いたタンパク質結晶化スクリーニング2010

    • Author(s)
      菅原道泰
    • Organizer
      日本結晶学会 平成22年度年会
    • Place of Presentation
      大阪、吹田市
    • Related Report
      2010 Annual Research Report
  • [Patent(Industrial Property Rights)] タンパク質結晶製造方法2011

    • Inventor(s)
      菅原道泰
    • Industrial Property Rights Holder
      独立行政法人理化学研究所
    • Filing Date
      2011-05-18
    • Related Report
      2012 Final Research Report
  • [Patent(Industrial Property Rights)] タンパク質結晶製造方法2011

    • Inventor(s)
      菅原道泰
    • Industrial Property Rights Holder
      独立行政法人理化学研究所
    • Industrial Property Number
      2011-111682
    • Filing Date
      2011-05-18
    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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