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Studies of gene expression regulated by membrane bound transcription factors in plants

Research Project

Project/Area Number 23380206
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied molecular and cellular biology
Research InstitutionOsaka Prefecture University

Principal Investigator

KOIZUMI Nozomu  大阪府立大学, 生命環境科学研究科(系), 教授 (20252835)

Co-Investigator(Renkei-kenkyūsha) SHIMADA Yukihisa  横浜市立大学, 木原生物学研究所, 教授 (30300875)
Project Period (FY) 2011-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥15,990,000 (Direct Cost: ¥12,300,000、Indirect Cost: ¥3,690,000)
Fiscal Year 2014: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2013: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2012: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2011: ¥7,410,000 (Direct Cost: ¥5,700,000、Indirect Cost: ¥1,710,000)
Keywords小胞体ストレス / 転写因子 / シロイヌナズナ / 細胞質スプライシング / 小胞体ストレス応答 / RNA分解 / 遺伝子 / 植物
Outline of Final Research Achievements

We tried to clarify the activation mechanism of two membrane-bound transcription factors of Arabidopsis, bZIP60 and bZIP28; both of them are involved in the ER stress response. We also tried to identify the substrate of cytoplasmic splicing catalyzed by IRE1, a sensor molecule of the ER stress response. Transcriptomes analysis using microarray and, IRE1 and bZIP60 knockouts indicated that bZIP60 locates in downstream of IRE1 signaling. Taken together additional biochemical experiments, we concluded that newly synthesized bZIP60 protein loses its transmembrane domain due to the frame shift caused by cytoplasmic splicing and then translocates to the nucleus where it activates the expression of the ER stress related genes. This finding answered two of our questions, activation mechanism of bZIP60 and target of IRE1. Another membrane bound transcription factor bZIP28 was found not to be regulated by a protease S1P, even though it has been considered to regulate the activation of bZIP28.

Report

(5 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (34 results)

All 2015 2014 2013 2012 2011 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results,  Acknowledgement Compliant: 1 results) Presentation (22 results) (of which Invited: 3 results) Remarks (3 results)

  • [Journal Article] Exogenous salicylic acid activates two signaling arms of the unfolded protein response in Arabidopsis.2014

    • Author(s)
      Yukihiro Nagashima, Yuji Iwata, Makoto Ashida, Kei-ichiro Mishiba and Nozomu Koizumi.
    • Journal Title

      Plant & Cell Physiology

      Volume: 55 Issue: 10 Pages: 1772-1778

    • DOI

      10.1093/pcp/pcu108

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] 生物間における細胞質スプライシングの保存性と多様性2013

    • Author(s)
      小泉望、長島幸弘
    • Journal Title

      生化学

      Volume: 85 Pages: 1095-1099

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Defects in IRE1 enhance cell death and fail to degrade mRNAs encoding secretory pathway proteins in the Arabidopsis unfolded protein response2013

    • Author(s)
      Mishiba KI, Nagashima Y, Suzuki E, Hayashi N, Ogata Y, Shimada Y, Koizumi N
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 110 Issue: 14 Pages: 5713-5718

    • DOI

      10.1073/pnas.1219047110

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of the plant-specific endoplasmic reticulum stress-inducible gene <i>TIN1</i> in the formation of pollen surface structure in <i>Arabidopsis thaliana</i>2012

    • Author(s)
      Yuji Iwata, Tsuneyo Nishino, Megumi Iwano, Seiji Takayama, Nozomu Koizumi
    • Journal Title

      Plant Biotechnology

      Volume: 29 Issue: 1 Pages: 51-56

    • DOI

      10.5511/plantbiotechnology.11.1228a

    • NAID

      10030561397

    • ISSN
      1342-4580, 1347-6114
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Plant transducers of the endoplasmic reticulum unfolded protein response2012

    • Author(s)
      Iwata, Y., and Koizumi, N.
    • Journal Title

      Trends in Plant Science

      Volume: 17 Issue: 12 Pages: 720-727

    • DOI

      10.1016/j.tplants.2012.06.014

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of a Series of Gateway Binary Vectors Possessing a Tunicamycin Resistance Gene as a Marker for the Transformation of Arabidopsis thaliana2011

    • Author(s)
      Tanaka Y, Nakamaura S, Kawamukai M, Koizumi N, Nakagawa T
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 75 Issue: 4 Pages: 804-807

    • DOI

      10.1271/bbb.110063

    • NAID

      10028272038

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Analysis of a transcription factor using transient assay in Arabidopsis protoplasts2011

    • Author(s)
      Iwata, Y., Lee, M.H., Koizumi, N.
    • Journal Title

      Methods in Molecular Biology

      Volume: 754 Pages: 107-117

    • DOI

      10.1007/978-1-61779-154-3_6

    • ISBN
      9781617791536, 9781617791543
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 植物における小胞体の品質管理 病原菌認識機構の解析から見えてきたもの2011

    • Author(s)
      小泉 望、岩田雄二
    • Journal Title

      化学と生物

      Volume: 49 Pages: 88-91

    • NAID

      10027898368

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Arabidopsis IRE1 catalyses unconventional splicing of bZIP60 mRNA to produce the active transcription factor2011

    • Author(s)
      Nagashima, H, Mishiba H, Suzuki E, Shimada Y, Iwata Y, Koizumi N
    • Journal Title

      Scientific Reports

      Volume: 1 Issue: 1 Pages: 29-29

    • DOI

      10.1038/srep00029

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] Molecular mechanism of proteolytic activation of bZIP28, an Arabidopsis membrane-bound transcription factor involved in the unfolded protein response2015

    • Author(s)
      Makao Ashida, Yuji Iwata, Kei-ichiro Mishiba and Nozomu Koizumi
    • Organizer
      日本植物生理学会
    • Place of Presentation
      東京農業大学
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Ligation of bZIP60 mRNA cleaved by IRE1 in Arabidopsis” Yukihiro Nagashima2015

    • Author(s)
      Yukihiro Nagashima, Yuji Iwata, Kei-ichiro Mishiba and Nozomu Koizumi
    • Organizer
      日本植物生理学会
    • Place of Presentation
      東京農業大学
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] IRE1による細胞質スプライシングの生化学的解析2014

    • Author(s)
      長島幸広、岩田雄二、小泉望、三柴啓一郎
    • Organizer
      日本植物細胞分子生物学会
    • Place of Presentation
      いわて県民情報交流センター
    • Year and Date
      2014-08-22 – 2014-08-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] シロイヌナズナにおけるサリチル酸による小胞体シャペロンの誘導機構2013

    • Author(s)
      長島 幸広、飯田 宰、三柴啓一郎、小泉 望
    • Organizer
      日本植物細胞分子生物学会・第31回大会
    • Place of Presentation
      札幌
    • Related Report
      2013 Annual Research Report
  • [Presentation] 小胞体ストレスセンサーIRE1に依存的なmRNA分解の解析2013

    • Author(s)
      三柴啓一郎、長島 幸広、鈴木英司、林のりこ、尾形義之、嶋田幸久、小泉 望
    • Organizer
      日本植物細胞分子生物学会・第31回大会
    • Place of Presentation
      札幌
    • Related Report
      2013 Annual Research Report
  • [Presentation] The IRE1-bZIP signaling pathway in Arabidopsis unfolded protein response

    • Author(s)
      Nozomu Koizumi
    • Organizer
      GNU Plant Science Symposium 2012
    • Place of Presentation
      韓国ジンジュ市
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Salicylic acid induces genes for the unfolded protein response depending on IRE1 and bZIP60 in Arabidopsis

    • Author(s)
      Yukihiro Nagashima, Kei-ichiro Mishiba and Nozomu Koizumi
    • Organizer
      XV International Congress on Molecular Plant-Microbe Interactions
    • Place of Presentation
      京都
    • Related Report
      2012 Annual Research Report
  • [Presentation] サリチル酸による小胞体ストレス応答関連遺伝子の誘導にIRE1-bZIP60経路が関わる

    • Author(s)
      長島幸広、三柴啓一郎、鈴木英司、嶋田幸久、岩田雄二、小泉望
    • Organizer
      日本植物細胞分子生物学会
    • Place of Presentation
      奈良・生駒
    • Related Report
      2012 Annual Research Report
  • [Presentation] 小胞体シャペロンを恒常的に発現するシロイヌナズナ変異体の単離

    • Author(s)
      飯田宰、大西陽向、三柴啓一郎、小泉望
    • Organizer
      日本植物細胞分子生物学会
    • Place of Presentation
      奈良・生駒
    • Related Report
      2012 Annual Research Report
  • [Presentation] IRE1-bZIP60 Pathway Induces UPR genes by Salicylic Acid (SA) in Arabidopsis

    • Author(s)
      Yukihiro Nagashima, Kei-ichiro Mishiba and Nozomu Koizumi
    • Organizer
      10th International Congress on Plant Molecular Biology
    • Place of Presentation
      韓国済州島
    • Related Report
      2012 Annual Research Report
  • [Presentation] Characterization of Arabidopsis mutants for the unfolded protein response

    • Author(s)
      Kei-ichiro Mishiba, Yukihiro Nagashima, Eiji Suzuki, Noriko Hayashi, Yoshiyuki Ogata, Yukihisa Shimada and Nozomu Koizumi
    • Organizer
      10th International Congress on Plant Molecular Biology
    • Place of Presentation
      韓国済州島
    • Related Report
      2012 Annual Research Report
  • [Presentation] プラスチドにおける脂質合成と小胞体ストレス応答

    • Author(s)
      飯田宰、大西陽向、三柴啓一郎、倉田哲也、小泉望
    • Organizer
      日本植物脂質科学研究会
    • Place of Presentation
      兵庫・神戸
    • Related Report
      2012 Annual Research Report
  • [Presentation] シロイヌナズナの小胞体ストレス応答において小胞体で合成されるタンパク質のmRNAがIRE1により分解される

    • Author(s)
      三柴啓一郎、長島幸広、鈴木英司、林のりこ、尾形善之、嶋田幸久、小泉望
    • Organizer
      日本植物生理学会
    • Place of Presentation
      岡山
    • Related Report
      2012 Annual Research Report
  • [Presentation] 小胞体ストレスを指標としたシロイヌナズナ変異体の単離

    • Author(s)
      飯田宰、大西陽向、三柴啓一郎、倉田哲也、小泉望
    • Organizer
      日本植物生理学会
    • Place of Presentation
      岡山
    • Related Report
      2012 Annual Research Report
  • [Presentation] サリチル酸によるIRE1/bZIP60 経路を介した小胞体ストレス応答関連遺伝子の誘導

    • Author(s)
      長島幸広、飯田宰、三柴啓一郎、小泉望
    • Organizer
      日本植物生理学会
    • Place of Presentation
      岡山
    • Related Report
      2012 Annual Research Report
  • [Presentation] Salicylic acid induces UPR genes through IRE1/bZIP60 pathway in Arabidopsis

    • Author(s)
      Yukihiro Nagashima, Tukasa Iida, Kei-ichiro Misiba, Nozomu Koziumi
    • Organizer
      The 6th International Workshop on Plant Membrane Biology
    • Place of Presentation
      岡山・倉敷
    • Related Report
      2012 Annual Research Report
  • [Presentation] Kei-ichiro Misiba, Yukihiro Nagashima, Eiji Suzuki, Noriko Hayashi, Yoshiyuki Ogata, Yukihisa Shimada, Nozomu Koizumi

    • Author(s)
      IRE1-dependent decay of mRNAs in the Arabidopsis unfolded protein response
    • Organizer
      The 6th International Workshop on Plant Membrane Biology
    • Place of Presentation
      岡山・倉敷
    • Related Report
      2012 Annual Research Report
  • [Presentation] Arabidopsis IRE1 catalyses cytoplasmic splicing of bZIP60 mRNA to produce the active transcription factor

    • Author(s)
      Yukihiro Nagashima, Kei-ichiro Mishiba, Eiji Suzuki, Yukihisa Shimada, Yuji Iwata, and Nozomu Koizumi
    • Organizer
      International Plant RNA workshop
    • Place of Presentation
      神奈川・鶴見
    • Related Report
      2011 Annual Research Report
  • [Presentation] 植物における小胞体ストレス応答の分子機構

    • Author(s)
      小泉 望
    • Organizer
      農芸化学関西支部第470回講演会
    • Place of Presentation
      大阪・堺
    • Related Report
      2011 Annual Research Report
    • Invited
  • [Presentation] シロイヌナズナIRE1による小胞体局在型転写因子bZIP60の制御機構の解明

    • Author(s)
      長島幸広、三柴啓一郎、鈴木英司、嶋田幸久、岩田雄二、小泉望
    • Organizer
      日本植物細胞分子生物学会
    • Place of Presentation
      福岡
    • Related Report
      2011 Annual Research Report
  • [Presentation] 細胞質スプライシングにより制御されるシロイヌナズナの転写因子bZIP60

    • Author(s)
      小泉 望
    • Organizer
      京都植物バイテク談話会
    • Place of Presentation
      京都
    • Related Report
      2011 Annual Research Report
    • Invited
  • [Presentation] シロイヌナズナの小胞体ストレス応答におけるIRE1-bZIP60経路の解析

    • Author(s)
      長島幸広、三柴啓一郎、鈴木英司、嶋田幸久、岩田雄二、小泉望
    • Organizer
      日本植物生理学会
    • Place of Presentation
      京都
    • Related Report
      2011 Annual Research Report
  • [Remarks] 植物分子育種学研究グループ

    • URL

      http://www.plant.osakafu-u.ac.jp/~mishiba/index.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 小胞体と核のコミュニケーション機構の解明

    • URL

      http://www.plant.osakafu-u.ac.jp/~mishiba/Research.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] 小胞体と核のコミュニケーション機構の解明

    • URL

      http://www.plant.osakafu-u.ac.jp/~mishiba/Research.html

    • Related Report
      2011 Annual Research Report

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Published: 2011-04-06   Modified: 2019-07-29  

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