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Chromatin regulation by DNA replication and recombination

Research Project

Project/Area Number 23570212
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Molecular biology
Research InstitutionOsaka University

Principal Investigator

NAKAGAWA TAKURO  大阪大学, 理学(系)研究科(研究院), 准教授 (20324866)

Research Collaborator MASUKATA Hisao  大阪大学, 大学院理学研究科, 教授 (00199689)
TAKAHASHI Tatsuro  大阪大学, 大学院理学研究科, 助教 (50452420)
ZAFAR Faria  大阪大学, 大学院理学研究科, 博士課程
OKITA Akiko  大阪大学, 大学院理学研究科, 博士課程
ONAKA Atsushi  大阪大学, 大学院理学研究科, 博士課程
SAGAWA Minami  大阪大学, 大学院理学研究科, 修士課程
SU Jie  大阪大学, 大学院理学研究科, 修士課程
TOYOFUKU Naoko  大阪大学, 大学院理学研究科, 修士課程
KATAHIRA Yasuhiro  大阪大学, 大学院理学研究科, 修士課程
INOUE Takahiro  大阪大学, 大学院理学研究科, 修士課程
Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2011: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
KeywordsDNA複製 / DNA組換え / セントロメア / クロマチン / 分裂酵母 / 染色体分配 / DNA複製 / DNA組換え / 染色体再編 / MCMヘリケース / Rad51 / DNAポリメラーゼα
Research Abstract

Chromatin structures affect the pathway choice of DNA recombination. We found that the chromatin structures formed in centromere prevents single-strand annealing (SSA) and crossing over to take place. This centromere-specific regulation of recombination is important to prevent gross chromosomal rearrangement (GCR) in centromere.
Numbers of pre-replicative complexes (preRCs) are assembled on each chromosome in eukaryotes. We found that the formation of preRCs is important not only for DNA replication per se but also for the repair of DNA double-strand breaks (DSBs) and for the construction of chromatin structures in centromere probably through histone acetylation.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (63 results)

All 2014 2013 2012 2011 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results,  Open Access: 1 results) Presentation (40 results) (of which Invited: 5 results) Book (2 results) Remarks (11 results)

  • [Journal Article] The DNA damage checkpoint pathway promotes extensive resection and nucleotide synthesis to facilitate homologous recombination repair and genome stability in fission yeast2014

    • Author(s)
      Blaikley, E. J., Tinline-Purvis, H., Kasparek, T. R., Marguerat, S., Sarkar, S., Hulme, L., Hussey, S., Wee, B. Y., Deegan, R. S., Walker, C. A., Pai, C. C., Bahler, J., Nakagawa, T., and Humphrey, T. C.
    • Journal Title

      Nucleic Acids Res

      Volume: 42 Issue: 9 Pages: 5644-5656

    • DOI

      10.1093/nar/gku190

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Telomere-binding proteins play roles in control of replication timing2012

    • Author(s)
      Tazumi, A., Masukata, H.
    • Journal Title

      Cell Cycle

      Volume: 11(24) Issue: 18 Pages: 4492-4493

    • DOI

      10.1101/gad.194282.112

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Mcm10 plays an essential role in origin DNA unwinding after assembly of the CMG components2012

    • Author(s)
      Mai Kanke
    • Journal Title

      The EMBO Journal

      Volume: 31 Issue: 9 Pages: 2182-2194

    • DOI

      10.1038/emboj.2012.68

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] The Prereplication Complex Recruits XEco2 to Chromatin to Promote Cohesin Acetylation in Xenopus Egg Extracts2012

    • Author(s)
      Torahiko L. Higashi
    • Journal Title

      Current Biology

      Volume: 22 Issue: 11 Pages: 977-988

    • DOI

      10.1016/j.cub.2012.04.013

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] DNA polymerization-independent functions of DNA polymerase epsilon in assembly and progression of the replisome in fission yeast.2012

    • Author(s)
      Handa, T.
    • Journal Title

      Molecular Biology of the Cell

      Volume: 23 (16) Issue: 16 Pages: 3240-3253

    • DOI

      10.1091/mbc.e12-05-0339

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] An abundance of pre-replicative complexes (pre-RCs) facilitates recombinational repair under replication stress in fission yeast2011

    • Author(s)
      Maki, K., Inoue, T., Onaka, A., Hashizume, H., Somete, N., Kobayashi, Y., Murakami, S., Shigaki, C., Takahashi, TS., Masukata, H., Nakagawa, T
    • Journal Title

      J. Biol. Chem.

      Volume: 286(48) Issue: 48 Pages: 41701-41710

    • DOI

      10.1074/jbc.m111.285619

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Auxin-inducible protein depletion system in fission yeast2011

    • Author(s)
      Kanke M
    • Journal Title

      BMC Cell Biology

      Volume: 12 Issue: 1 Pages: 8-8

    • DOI

      10.1186/1471-2121-12-8

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] CDK promotes interactions of Sld3 and Drc1 with Cut5 for initiation of DNA replication in fission yeast2011

    • Author(s)
      Fukuura M.、 Nagao K.、 Obuse C.、 Takahashi T.S.、 Nakagawa T.、Masukata H.
    • Journal Title

      Molecular biology of the cell

      Volume: 22(14) Issue: 14 Pages: 2620-2633

    • DOI

      10.1091/mbc.e10-12-0995

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Abundance of prereplicative complexes (Pre-RCs) facilitates recombinational repair under replication stress in fission yeast.2011

    • Author(s)
      Maki K, Inoue T, Onaka A, Hashizume H, Somete N, Kobayashi Y, Murakami S, Shigaki C, Takahashi TS, Masukata H, Nakagawa T.
    • Journal Title

      Journal of Biological Chemistry

      Volume: 286 Pages: 41701-41710

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] CDK promotes interactions of Sld3 and Drc1 with Cut5 for initiation of DNA replication in fission yeast.2011

    • Author(s)
      Fukuura M, Nagao K, Obuse C, Takahashi TS, Nakagawa T, Masukata H.
    • Journal Title

      Molecular Biology of the Cell

      Volume: 22 Pages: 2620-2633

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] 相同組換えによるセントロメア領域の染色体再編の抑制2014

    • Author(s)
      中川拓郎
    • Organizer
      公開シンポジウム「インターメアによる染色体制御機構」
    • Place of Presentation
      (東京大学山上会館)
    • Related Report
      2013 Final Research Report
  • [Presentation] 相同組換えによるセントロメア領域の染色体再編の抑制2014

    • Author(s)
      中川拓郎
    • Organizer
      新学術領域研究「ゲノムを支える非コードDNA領域の機能」
    • Place of Presentation
      東京大学・山上会館
    • Related Report
      2013 Annual Research Report
  • [Presentation] セントロメア領域のCENP-SXを介した組換え制御による染色体再編の抑制2013

    • Author(s)
      ザファーファリア、沖田暁子、大仲惇司、蘇傑、高橋達郎、升方久夫、中川拓郎
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      (神戸ポートアイランド)
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Regulation of the recombination at centromere by CENP-SX2013

    • Author(s)
      Akiko Okita, Faria Zafar, Tatsuro S Takahashi, Hisao Masukata, Takuro Nakagawa.
    • Organizer
      第22回DNA複製・組換え・修復ワークショップ
    • Place of Presentation
      (宮城県仙台市、秋保温泉)
    • Related Report
      2013 Final Research Report
  • [Presentation] CENP-SX/MHF1-2を介したセントロメア領域の染色体再編の抑制2013

    • Author(s)
      中川拓郎
    • Organizer
      国立遺伝学研究所・研究会「染色体DNAの安定維持の分子メカニズム」
    • Place of Presentation
      (静岡県三島、国立遺伝学研究所)
    • Related Report
      2013 Final Research Report
  • [Presentation] キネトコア蛋白質CENP-SXによるセントロメアの維持機構2013

    • Author(s)
      中川拓郎
    • Organizer
      第85回日本遺伝学会大会
    • Place of Presentation
      (慶応大学日吉キャンパス)
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Centromere integrity is preserved by Rad51-dependent recombination in fission yeast2013

    • Author(s)
      Faria Zafar, Atsushi Onaka, Akiko Okita, Rei Asai, Takeshi Shitanda, Tatsuro Takahashi, Hisao Masukata, Takuro Nakagawa
    • Organizer
      EMBO Conference on Fission Yeast: Pombe 2013
    • Place of Presentation
      (London, UK)
    • Related Report
      2013 Final Research Report
  • [Presentation] Centromere-specific regulation of recombination in fission yeast2013

    • Author(s)
      Akiko Okita, Atsushi Onaka, Yasuhiro Katahira, Tatsuro Takahashi, Hisao Masukata, Takuro Nakagawa.
    • Organizer
      MBO Conference on Fission Yeast: Pombe 2013
    • Place of Presentation
      (London, UK)
    • Related Report
      2013 Final Research Report
  • [Presentation] セントロメア領域のCENP-SXを介した 組換え制御による染色体再編の抑制2013

    • Author(s)
      中川拓郎
    • Organizer
      第36回分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Regulation of the recombination at centromere by CENP-SX2013

    • Author(s)
      沖田暁子
    • Organizer
      第22回DNA複製・組換え・修復ワークショップ
    • Place of Presentation
      宮城県仙台市・秋保温泉
    • Related Report
      2013 Annual Research Report
  • [Presentation] CENP-SX/MHF1-2を介した セントロメア領域の染色体再編の抑制2013

    • Author(s)
      中川拓郎
    • Organizer
      国立遺伝学研究所・研究会「染色体DNAの安定維持の分子メカニズム」
    • Place of Presentation
      静岡県・国立遺伝学研究所
    • Related Report
      2013 Annual Research Report
  • [Presentation] キネトコア蛋白質CENP-SXによるセントロメアの維持機構2013

    • Author(s)
      中川拓郎
    • Organizer
      日本遺伝学会 第85回大会
    • Place of Presentation
      慶応大学・日吉キャンパス
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Centromere integrity is preserved by Rad51-dependent recombination in fission yeast2013

    • Author(s)
      Takuro Nakagawa
    • Organizer
      EMBO Conference on Fission Yeast: pombe 2013
    • Place of Presentation
      イギリス・ロンドン
    • Related Report
      2013 Annual Research Report
  • [Presentation] Centromere-specific regulation of recombination in fission yeast2013

    • Author(s)
      Akiko Okita
    • Organizer
      EMBO Conference on Fission Yeast: pombe 2013
    • Place of Presentation
      イギリス・ロンドン
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヘテロクロマチン構造によるセントロメアにおける相同組換えの制御機構2012

    • Author(s)
      沖田暁子、大仲惇司、片平泰弘、高橋達郎、升方久夫、中川拓郎
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      (福岡国際会議場・マリンメッセ福岡)
    • Related Report
      2013 Final Research Report
  • [Presentation] NA ポリメラーゼα によるセントロメア特異的組換えの制御2012

    • Author(s)
      大仲惇司、片平泰弘、高橋達郎、升方久夫、中川拓郎
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      (福岡国際会議場・マリンメッセ福岡)
    • Related Report
      2013 Final Research Report
  • [Presentation] Effects of chromatin structures on recombination in centromeres of fission yeast2012

    • Author(s)
      Faria Zafar, Takeshi Shitanda, Rei Asai, Tatsuro Takahashi, Hisao Masukata, Takuro Nakagawa
    • Organizer
      The 8th 3R Symposium
    • Place of Presentation
      (兵庫県、淡路夢舞台)
    • Related Report
      2013 Final Research Report
  • [Presentation] Recombination between centromere repeats in fission yeast2012

    • Author(s)
      Akiko Okita, Faria Zafar, Rei Asai, Takeshi Shitanda, Tatsuro Takahashi, Hisao Masukata, Takuro Nakagawa.
    • Organizer
      The 8th 3R Symposium
    • Place of Presentation
      (兵庫県、淡路夢舞台)
    • Related Report
      2013 Final Research Report
  • [Presentation] 分裂酵母セントロメアでの組換え制御機構2012

    • Author(s)
      中川拓郎
    • Organizer
      国立遺伝学研究所・研究会「遺伝情報の安定維持を支える分子メカニズム」
    • Place of Presentation
      (静岡県三島、国立遺伝学研究所)
    • Related Report
      2013 Final Research Report
  • [Presentation] Recombination between centromere repeats in fission yeast2012

    • Author(s)
      Takuro Nakagawa
    • Organizer
      The 8th 3R symposium
    • Place of Presentation
      兵庫県、淡路夢舞台
    • Related Report
      2012 Research-status Report
  • [Presentation] Effects of chromain structures on recombination in centromeres of fission yeast2012

    • Author(s)
      Faria Zafar
    • Organizer
      The 8th 3R symposium
    • Place of Presentation
      兵庫県、淡路夢舞台
    • Related Report
      2012 Research-status Report
  • [Presentation] ヘテロクロマチン構造によるセントロメアにおける相同組換えの制御機構2012

    • Author(s)
      沖田暁子
    • Organizer
      第35回 日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場
    • Related Report
      2012 Research-status Report
  • [Presentation] DNAポリメラーゼαによるセントロメア特異的組換えの制御2012

    • Author(s)
      大仲惇司
    • Organizer
      第35回 日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場
    • Related Report
      2012 Research-status Report
  • [Presentation] 分裂酵母セントロメアでの組換え制御機構2012

    • Author(s)
      中川拓郎
    • Organizer
      国立遺伝学研究所研究集会「遺伝情報の安定性を支える分子メカニズム」
    • Place of Presentation
      静岡県、国立遺伝学研究所
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] 酵母でのChIP法実験操作の解説2011

    • Author(s)
      中川拓郎
    • Organizer
      千里ライフサイエンス振興財団、技術講習会「クロマチン免疫沈降」
    • Place of Presentation
      (大阪、千里ライフサイエンスセンター)
    • Year and Date
      2011-09-26
    • Related Report
      2013 Final Research Report
  • [Presentation] Fボックス因子Pof3によるセントロメアの相同組換えの制御機構2011

    • Author(s)
      片平泰弘、浅井麗伊、四反田武志、高橋達郎、升方久夫、中川拓郎
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      (パシフィコ横浜)
    • Related Report
      2013 Final Research Report
  • [Presentation] 分裂酵母セントロメア領域に於けるDNA組換えの分子機構2011

    • Author(s)
      四反田武志、浅井麗伊、ザファーファリア、井上卓大、片平泰弘、高橋達郎、升方久夫、中川拓郎
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      (パシフィコ横浜)
    • Related Report
      2013 Final Research Report
  • [Presentation] Effects of chromatin structures on recombination in centromeres of fission yeast2011

    • Author(s)
      Faria Zafar, Rei Asai, Takeshi Shitanda, Tatsuro Takahashi, Hisao Masukata, Takuro Nakagawa.
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      (パシフィコ横浜)
    • Related Report
      2013 Final Research Report
  • [Presentation] セントロメアにおける相同組換えの制御機構の解明2011

    • Author(s)
      大仲惇司、片平泰弘、高橋達郎、升方久夫、中川拓郎.
    • Organizer
      第21回DNA複製・組換え・ゲノム安定性制御ワークショップ
    • Place of Presentation
      (福岡県サンピア福岡)
    • Related Report
      2013 Final Research Report
  • [Presentation] 複製前複合体pre-RCの多数形成は組換え修復の後期過程を促進する2011

    • Author(s)
      井上卓大、真木賢太郎、大仲惇司、橋詰紘子、染手那緒子、小林優子、村上成文、志垣智佳子、高橋達郎、升方久夫、中川拓郎
    • Organizer
      第21回DNA複製・組換え・ゲノム安定性制御ワークショップ
    • Place of Presentation
      (福岡県サンピア福岡)
    • Related Report
      2013 Final Research Report
  • [Presentation] セントロメアでの組換えの制御機構2011

    • Author(s)
      中川拓郎
    • Organizer
      国立遺伝学研究所・研究会「ゲノム損傷応答研究会」
    • Place of Presentation
      (静岡県三島、国立遺伝学研究所)
    • Related Report
      2013 Final Research Report
  • [Presentation] Recombination between the centromere repeats in fission yeast2011

    • Author(s)
      Takeshi Shitanda, Rei Asai, Faria Zafar, Takahiro Inoue, Yasuhiro Katahira, Tatsuro S Takahashi, Hisao Masukata, Takuro Nakagawa
    • Organizer
      The 6th International Fission Yeast Meeting
    • Place of Presentation
      (Boston, USA)
    • Related Report
      2013 Final Research Report
  • [Presentation] Recombination between the centromere repeats in fission yeast.2011

    • Author(s)
      Nakagawa T.
    • Organizer
      6th International Fission Yeast Meeting(招待講演)
    • Place of Presentation
      Boston, USA
    • Related Report
      2011 Research-status Report
  • [Presentation] DNA recombination between centromere repeats in fission yeast2011

    • Author(s)
      Nakagawa T.
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2011 Research-status Report
  • [Presentation] Fボックス因子Pof3によるセントロメアの相同組換えの制御機構2011

    • Author(s)
      片平泰弘
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2011 Research-status Report
  • [Presentation] Effects of chromatin structures on recombination in centromeres of fission yeast2011

    • Author(s)
      Faria Zafar
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2011 Research-status Report
  • [Presentation] 井上卓大2011

    • Author(s)
      複製前複合体pre-RCの多数形成は組換え修復の後期過程を促進する
    • Organizer
      第21回DNA複製・組換え・ゲノム安定維持制御ワークショップ
    • Place of Presentation
      福岡県福津市
    • Related Report
      2011 Research-status Report
  • [Presentation] 大仲惇司2011

    • Author(s)
      セントロメアにおける相同組換えの制御機構の解明
    • Organizer
      第21回DNA複製・組換え・ゲノム安定維持制御ワークショップ
    • Place of Presentation
      福岡県福津市
    • Related Report
      2011 Research-status Report
  • [Presentation] セントロメアでのDNA組換えの制御機構2011

    • Author(s)
      中川拓郎
    • Organizer
      国立遺伝学研究所研究集会「ゲノム損傷応答研究会」
    • Place of Presentation
      国立遺伝学研究所(三島市)
    • Related Report
      2011 Research-status Report
  • [Presentation] 酵母でのChIP法実験操作の細説2011

    • Author(s)
      中川拓郎
    • Organizer
      千里ライフサイエンス振興財団、技術講習会「クロマチン免疫沈降法」
    • Place of Presentation
      千里ライフサイエンスセンター(大阪)
    • Related Report
      2011 Research-status Report
  • [Book] Regulation of Minichromosome Maintenance (MCM) Helicase in Response to Replication Stress. 65-86. In Fundamental Aspects of DNA Replication2011

    • Author(s)
      Zafar, T., and Nakagawa, T.
    • Publisher
      Dr. Jelena Kusic-Tisma, ed. (Rijeka, Croatia : In Tech)
    • Related Report
      2013 Final Research Report
  • [Book] Fundamental Aspects of DNA Replication2011

    • Author(s)
      Zafar F, Nakagawa T.
    • Total Pages
      22
    • Publisher
      InTech
    • Related Report
      2011 Research-status Report
  • [Remarks] 研究室のホームページ

    • URL

      http://www.bio.sci.osaka-u.ac.jp/bio_web/lab_page/masukata/index.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 研究グループのホームページ

    • URL

      http://www.bio.sci.osaka-u.ac.jp/~takuro/science/Welcome.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 大阪大学大学院理学研究科生物科学専攻ホームページ

    • URL

      http://www.bio.sci.osaka-u.ac.jp/dbs01/re-paper-temp.php?id=14

    • Related Report
      2013 Annual Research Report
  • [Remarks] 分子遺伝学(升方)研究室ホームページ

    • URL

      http://www.bio.sci.osaka-u.ac.jp/bio_web/lab_page/masukata/

    • Related Report
      2013 Annual Research Report
  • [Remarks] 「中川拓郎」研究グループのホームページ

    • URL

      http://www.bio.sci.osaka-u.ac.jp/~takuro/science/Welcome.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 中川拓郎のホームページ

    • URL

      http://www.bio.sci.osaka-u.ac.jp/~takuro/science/Welcome.html

    • Related Report
      2012 Research-status Report
  • [Remarks] 分子遺伝学(升方)研究室のホームページ

    • URL

      http://www.bio.sci.osaka-u.ac.jp/bio_web/lab_page/masukata/

    • Related Report
      2012 Research-status Report
  • [Remarks] 大阪大学大学院理学研究科生物科学科のホームページ

    • URL

      http://www.bio.sci.osaka-u.ac.jp/index.html

    • Related Report
      2012 Research-status Report
  • [Remarks]

    • URL

      http://www.bio.sci.osaka-u.ac.jp/~takuro/science/Welcome.html

    • Related Report
      2011 Research-status Report
  • [Remarks]

    • URL

      http://www.bio.sci.osaka-u.ac.jp/dbs01/re-paper-temp.php?id=14

    • Related Report
      2011 Research-status Report
  • [Remarks]

    • URL

      http://www.bio.sci.osaka-u.ac.jp/bio_web/lab_page/masukata/

    • Related Report
      2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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