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Characterization of a Escherichia coli strain that evolved in an experimental coevolution system

Research Project

Project/Area Number 23570268
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Evolutionary biology
Research InstitutionHirosaki University

Principal Investigator

KASHIWAGI AKIKO  弘前大学, 農学生命科学部, 准教授 (40362652)

Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2013: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2012: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2011: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywords実験進化学 / バクテリオファージ / 大腸菌 / 共進化 / 実験進化 / RNAバクテリオファージ / F繊毛 / 実験室内進化系 / 感染抵抗性
Research Abstract

To examine the ongoing changes driven by host-parasite interactions, I have constructed a coevolution model consisting of Escherichia coli and the bacteriophage Qb. Whole genome analysis indicated that E.coli showed fixation of two mutations (in traQ anc csdA) faster than in sole E.coli experimental evolution.
To elucidate the mechanism underlying this coexistence, I investigated how a mutation in TraQ changed the physiological state of E. coli. Overexpression of wild-type TraQ in the partially resistant strain of E. coli caused both TraA protein content, including propilin and pilin, and Qb amplification to recover to levels comparable with observed in the susceptible strain. These results suggest the possibility that the mutation in TraQ may cause heterogeneity within the E. coli population, with a small number of cells with F pili supporting the phage population and a large number of cells without F pili supporting the E. coli population.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (31 results)

All 2014 2013 2012 2011 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (22 results) (of which Invited: 1 results) Remarks (3 results)

  • [Journal Article]2012

    • Author(s)
      Tomonori Inomata, Hitomi Kimura, Haruki Hayasaka, Akinori Shiozaki, Yasuhiro Fujita, and Akiko Kashiwagi
    • Journal Title

      Archives of Virology

      Volume: Vol.157(11) Pages: 2163-2169

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Quantitative comparison of the RNA bacteriophage Qβ life cycle in rich and minimal media2012

    • Author(s)
      Tomonori Inomata, Hitomi Kimura, Haruki Hayasaka, Akinori Shiozaki, Yasuhiro Fujita, Akiko Kashiwagi
    • Journal Title

      Archives of Virology

      Volume: 157 Issue: 11 Pages: 2163-2169

    • DOI

      10.1007/s00705-012-1419-3

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article]2011

    • Author(s)
      Akiko Kashiwagi and Tetsuya Yomo
    • Journal Title

      PLoS Genetics

      Volume: Vol.7 (8)

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article]2011

    • Author(s)
      Saburo Tsuru, Nao Yasuda, Yoshie Murakami, Junya Ushioda, Kotaro Mori, Akiko Kashiwagi, Shingo Suzuki, Bei-Wen Ying, and Tetsuya Yomo
    • Journal Title

      Molecular Systems Biology

      Volume: Vol.7 Pages: 493-493

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ongoing phenotypic and genomic changes in experimental coevolution of RNA bacteriophage Qβ and Escherichia coli2011

    • Author(s)
      Akiko Kashiwagi and Tetsuya Yomo
    • Journal Title

      PLoS Genetics

      Volume: 7

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Adaptation by stochastic switching of a monostable genetic circuit in Escherichia coli2011

    • Author(s)
      Tsuru, et al
    • Journal Title

      Mol Syst Biol

      Volume: Vol.7 e493 Issue: 1 Pages: 493-493

    • DOI

      10.1038/msb.2011.24

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] PCR-DGGEによる市販牛乳中の細菌叢の分析2014

    • Author(s)
      尚 暁敏、竹内保浪、高橋美里、柏木明子、戸羽隆宏
    • Organizer
      日本畜産学会第118回大会
    • Place of Presentation
      つくば国際会議場・研究交流センター
    • Related Report
      2013 Annual Research Report
  • [Presentation]2013

    • Author(s)
      柏木明子,菅原竜,熊谷知史,對馬(佐野)文恵,熊坂直也,四方哲也
    • Organizer
      第65回日本生物工学会大会
    • Place of Presentation
      広島国際会議場(広島県)
    • Related Report
      2013 Final Research Report
  • [Presentation]2013

    • Author(s)
      柏木明子,菅原竜,對馬(佐野)文恵,熊谷知史,四方哲也
    • Organizer
      日本進化学会第15回筑波大会
    • Place of Presentation
      筑波大学(茨城県)
    • Related Report
      2013 Final Research Report
  • [Presentation] RNAファージQβの高温適応実験進化におけるアミノ酸配列の変化を伴わない塩基置換の適応への貢献2013

    • Author(s)
      柏木明子, 菅原 竜, 對馬(佐野)文恵, 熊谷知史, 四方 哲也
    • Organizer
      日本進化学会 第15回筑波大会
    • Place of Presentation
      筑波大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] 実験進化による高温適応RNAバクテリオファージQβの獲得とそのゲノム解析2013

    • Author(s)
      柏木明子、菅原 竜、熊谷知史、對馬(佐野)文恵、熊坂直也、四方哲也
    • Organizer
      第65回日本生物工学会大会
    • Place of Presentation
      広島国際会議場
    • Related Report
      2013 Annual Research Report
  • [Presentation]2012

    • Author(s)
      菅原竜,對馬(佐野)文恵,熊谷知史,四方哲也,柏木明子
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡県)
    • Related Report
      2013 Final Research Report
  • [Presentation]2012

    • Author(s)
      Akiko Kashiwagi and Tetsuya Yomo
    • Organizer
      日本進化学会第14回東京大会
    • Place of Presentation
      首都大学東京(東京都)
    • Related Report
      2013 Final Research Report
  • [Presentation] Co-evolution between a host and a pathogen2012

    • Author(s)
      Akiko Kashiwagi & Tetsuya Yomo
    • Organizer
      日本進化学会第14回東京大会
    • Place of Presentation
      首都大学東京
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] 独立栄養から従属栄養に向けてのシアノバクテリアの実験進化2012

    • Author(s)
      羽渕真清, 宮崎美賀子, 瀧川剛, 松本佑介, 末吉眞人, 木内あや子, 細田一史, 鈴木真吾, 柏木明子, 森光太郎, 四方哲也
    • Organizer
      日本進化学会第14回東京大会
    • Place of Presentation
      首都大学東京
    • Related Report
      2012 Research-status Report
  • [Presentation] RNAバクテリオファージQβを用いた進化実験2012

    • Author(s)
      柏木 明子
    • Organizer
      第4回ファージ研究会
    • Place of Presentation
      群馬大学
    • Related Report
      2012 Research-status Report
  • [Presentation] 実験室内進化によって得られた高温適応バクテリオファージQβの変異解析2012

    • Author(s)
      菅原 竜, 對馬(佐野) 文恵, 熊谷 知史, 四方 哲也,柏木 明子
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Related Report
      2012 Research-status Report
  • [Presentation]2011

    • Author(s)
      菅原竜,四方哲也,柏木明子
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Related Report
      2013 Final Research Report
  • [Presentation]2011

    • Author(s)
      柏木明子,四方哲也
    • Organizer
      日本遺伝学会第83回大会
    • Place of Presentation
      京都大学(京都府)
    • Related Report
      2013 Final Research Report
  • [Presentation]2011

    • Author(s)
      Akiko Kashiwagi and Tetsuya Yomo
    • Organizer
      International Union of Microbiological Societies 2011 Congress (IUMS 2011)
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Related Report
      2013 Final Research Report
  • [Presentation]2011

    • Author(s)
      Akiko Kashiwagi and Tetsuya Yomo
    • Organizer
      SMBE (Annual congerence of society for molecular biology and evolution)
    • Place of Presentation
      京都大学(京都府)
    • Related Report
      2013 Final Research Report
  • [Presentation]2011

    • Author(s)
      柏木明子,四方哲也
    • Organizer
      日本進化学会第13回大会
    • Place of Presentation
      京都大学(京都府)
    • Related Report
      2013 Final Research Report
  • [Presentation] Ongoing phenotypic and genomic changes in experimental coevolution of RNA bacteriophage Qβ and Escherichia coli2011

    • Author(s)
      Akiko Kashiwagi & Tetsuya Yomo
    • Organizer
      SMBE
    • Place of Presentation
      京都大学
    • Related Report
      2011 Research-status Report
  • [Presentation] Ongoing analysis of pehotypic and genomic changes in model coevolution system with Escherichia coli and bacteriophage Qβ2011

    • Author(s)
      Akiko Kashiwagi and Tetsuya Yomo
    • Organizer
      IUMS 2011
    • Place of Presentation
      札幌コンベンションセンター
    • Related Report
      2011 Research-status Report
  • [Presentation] 大腸菌とRNAウイルスのモデル共進化系における宿主と寄生者のゲノム変化解析2011

    • Author(s)
      柏木 明子、四方 哲也
    • Organizer
      日本進化学会第13回大会
    • Place of Presentation
      京都大学
    • Related Report
      2011 Research-status Report
  • [Presentation] 大腸菌とQβファージのモデル共進化系におけるゲノム変化2011

    • Author(s)
      柏木 明子、四方 哲也
    • Organizer
      日本遺伝学会 第83回大会
    • Place of Presentation
      京都大学
    • Related Report
      2011 Research-status Report
  • [Presentation] 大腸菌とQβ RNAファージとのモデル共進化系における宿主と寄生者の全ゲノム変化解析2011

    • Author(s)
      柏木 明子、四方 哲也
    • Organizer
      日本生物工学会 第63回大会
    • Place of Presentation
      東京農工大学
    • Related Report
      2011 Research-status Report
  • [Presentation] RNAバクテリオファージQβの高温適応系の構築2011

    • Author(s)
      菅原竜、四方哲也、柏木明子
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2011 Research-status Report
  • [Remarks]

    • URL

      http://nature.cc.hirosaki-u.ac.jp/public/akiko-kashiwagi/

    • Related Report
      2013 Final Research Report
  • [Remarks] 弘前大学農学生命科学部作成研究室ホームページ

    • URL

      http://nature.cc.hirosaki-u.ac.jp/public/akiko-kashiwagi/

    • Related Report
      2013 Annual Research Report
  • [Remarks] 弘前大学 農学生命科学部作成研究室ホームページ

    • URL

      http://nature.cc.hirosaki-u.ac.jp/kohou2/public/oyo/a.kashiwagi/index.htm

    • Related Report
      2012 Research-status Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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