• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Roles of the FACT for heterochromatic silencing in fission yeast

Research Project

Project/Area Number 23770001
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Genetics/Genome dynamics
Research InstitutionHokkaido University

Principal Investigator

TAKAHATA Shinya  北海道大学, 理学(系)研究科(研究院), 助教 (50381588)

Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2013: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2012: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2011: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsクロマチン / ヘテロクロマチン / ヒストンシャペロン / HP1 / FACT / Spt16 / Pob3 / CK2 / Swi6 / Chp2 / Nhp6 / ヒストンH2A / ヒストンH2B
Research Abstract

We performed the comprehensive histone chaperone gene disruption and found that pob3 gene disrupted fission yeast shows most serious silencing defects at the peri-centromeric heterochromatin. We also identified that Swi6 recruits FACT onto the heterochromatin independetly of RNA polymerase II transcription. Our microarray analysis to compare pob3 knockout strain and swi6 knockout strain revealed that the expression patterns of ncRNA and mRNA were quite similar in both strain as if they regulate gene expression in the same pathway. In pob3 knockout strain, we found that impaired histone H2A/H2B reorganization triggers heterochromatic silencing defect at peri-centromeric region. In additon, novel histone H3K9me regions were identified by ChIP-sequencing. Mutations in the heterochromatin/euchromatin boundary factor results more peaks at these regions, suggesting the biological significance of H3K9 methylation for living cells.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (25 results)

All 2014 2013 2011 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (18 results) (of which Invited: 2 results) Remarks (1 results)

  • [Journal Article] A novel method for purification of the endogenously expressed fission yeast Set2 complex2014

    • Author(s)
      Shota Suzuki, Koji Nagao, Chikashi Obuse, Yota Murakami, Shinya Takahata
    • Journal Title

      Protein Expression and Purification

      Volume: Vol.97 Pages: 44-49

    • NAID

      120005438258

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] A role of the FACT in repopulation of nucleosomes at inducible genes2014

    • Author(s)
      Warren Voth, Shinya Takahata, Joy Nishikawa, Benjamin Metcalfe, Anders Naar, David Stillman
    • Journal Title

      PLoS One

      Volume: Vol.9

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] A novel method for purification of the endogenously expressed fission yeast Set2 complex.2014

    • Author(s)
      Suzuki S, Nagao K, Obuse C, Murakami Y, Takahata S
    • Journal Title

      Protein Expression and Purification

      Volume: 97 Pages: 44-49

    • NAID

      120005438258

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A role for FACT in repopulation of nucleosomes at inducible genes.2014

    • Author(s)
      Voth WP, Takahata S, Nishikawa JL, Metcalfe BM, Naar AM, Stillman DJ.
    • Journal Title

      PLoS One

      Volume: 9

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Repressed chromatin affects factor binding at yeast HO (homothallic switching) promoter2011

    • Author(s)
      Shinya Takahata, Yaxin Yu, David Stillman
    • Journal Title

      JBC

      Volume: Vol.286 Pages: 34809-34819

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Repressive chromatin affects factor binding at yeast HO (homothallic switching) promoter.2011

    • Author(s)
      Shinya Takahata, Yaxin Yu, David J. Stillman
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 286 Pages: 34809-34819

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] Heterochromatic silencing defect in FACT mutant is concomitant with impaired H2A/H2B reorganization2013

    • Author(s)
      高畑信也、千田早織、村上洋太
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場、兵庫県
    • Related Report
      2013 Final Research Report
  • [Presentation] Heterochromatic silencing defect in FACT mutant is concomitant with impaired H2A/H2B reorganization2013

    • Author(s)
      Shinya Takahata, Saori Chida, Yota Murakami
    • Organizer
      Message from Yeast to Epigenetics Symposium
    • Place of Presentation
      グランディア芳泉、福井県
    • Related Report
      2013 Final Research Report
  • [Presentation] Hterochromatic silencing defect in FACT mutant is concomitant with impaired H2A/H2B reorganization2013

    • Author(s)
      Shinya Takahata, Saori Chida, Yota Murakami
    • Organizer
      Cold Spring Harbor Meeting, Cold Spring Harbor Laboratory
    • Place of Presentation
      New York, USA
    • Related Report
      2013 Final Research Report
  • [Presentation] ヒストンH2A/H2BシャペロンFACT複合体によるヘテロクロマチンサイレンシングの分子機構2013

    • Author(s)
      高畑信也、千田早織、村上洋太
    • Organizer
      第65回日本細胞生物学会年会
    • Place of Presentation
      ウインク愛知、愛知県
    • Related Report
      2013 Final Research Report
  • [Presentation] Heterochromatic Silencing Defect in FACT mutant is Concomitant With Impaired H2A/H2B Reorganization2013

    • Author(s)
      Takahata S, Chida S, Murakami Y
    • Organizer
      Cold Spring Harbor Meeting, Mechanism of eularyotic transcription
    • Place of Presentation
      Cold Spring Harbor Laboratory, NY, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] Heterochromatic Silencing Defect in FACT mutant is Concomitant With Impaired H2A/H2B Reorganization.2013

    • Author(s)
      Takahata S, Chida S, Murakami Y
    • Organizer
      酵母からのエピジェネティクス研究へのメッセージ
    • Place of Presentation
      グランディア芳泉(福井県あわら市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヒストンH2A/H2BシャペロンFACT複合体によるヘテロクロマチンサイレンシングの分子機構2013

    • Author(s)
      高畑信也、千田早織、村上洋太
    • Organizer
      第65回日本細胞生物学会大会
    • Place of Presentation
      ウインク愛知(名古屋市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Heterochromatic silencing defect in FACT mutant is concomitant with impaired H2A/H2B reorganization2013

    • Author(s)
      高畑信也、千田早織、村上洋太
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場(神戸市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Transcriptional machinery including RNA polymerase II regulates transcriptional and post-transcriptional gene silencing at heterochromatin2011

    • Author(s)
      Yota Murakami, Shinya Takahata, Takuya Kajitani, Shota Suzuki, Saori Chida, Miyuki Mori
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜、神奈川県
    • Related Report
      2013 Final Research Report
  • [Presentation] Functional analysis of a JumjC protein Epe1 as a heterochromatin boundary effector2011

    • Author(s)
      Masato Sorida, Shinya Takahata, Atsushi Shimada, Yota Murakami
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜、神奈川県
    • Related Report
      2013 Final Research Report
  • [Presentation] Functional analysis of Set2, histone H3K36 methyltransferase, for heterochromatin formation2011

    • Author(s)
      Shota Suzuki, Atsushi Shimada, Shinya Takahata, Yota Murakami
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜、神奈川県
    • Related Report
      2013 Final Research Report
  • [Presentation] Repression mechanism of the HO promoter in budding yeast2011

    • Author(s)
      Shinya Takahata, Yaxin Yu, Yota Murakami, David J. Stillman
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜、神奈川県
    • Related Report
      2013 Final Research Report
  • [Presentation] 分裂酵母におけるFACT依存的へテロクロマチンサイレンシング機構2011

    • Author(s)
      千田早織、村上洋太、高畑信也
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜、神奈川県
    • Related Report
      2013 Final Research Report
  • [Presentation] Repression mechanism of the HO promoter in budding yeast

    • Author(s)
      Shinya Takahata, Yaxin Yu, Yota Murakami, David J. Stillman
    • Organizer
      日本分子生物学会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Related Report
      2011 Research-status Report
  • [Presentation] 分裂酵母におけるFACT依存的ヘテロクロマチンサイレンシング機構

    • Author(s)
      千田早織 村上洋太 高畑信也
    • Organizer
      日本分子生物学会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Related Report
      2011 Research-status Report
  • [Presentation] Functional analysis of Set2, histone H3K36 methyltransferase, for heterochromatin formation in fission yeast

    • Author(s)
      Shouta Suzuki, Atsushi Shimada, Shinya Takahata, Yota Murakami
    • Organizer
      日本分子生物学会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Related Report
      2011 Research-status Report
  • [Presentation] Functional analysis of a JmjC protein Epe1 as a heterochromatin boundary effector

    • Author(s)
      Masato Sorida, Shinya Takahata, Atsushi Shimada, Yota Murakami
    • Organizer
      日本分子生物学会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Related Report
      2011 Research-status Report
  • [Presentation] Transcriptional machinery including RNA ppolymerase II regulates transcriptional and post-transcriptional gene silencing at heterochromatin

    • Author(s)
      Yota Murakami, Shinya Takahata, Takuya Kajitani, Shouta Suzuki, Saori Chida, Miyuki Mori
    • Organizer
      日本分子生物学会(招待講演)
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Related Report
      2011 Research-status Report
  • [Remarks]

    • URL

      http://wwwchem.sci.hokudai.ac.jp/~bo/

    • Related Report
      2013 Final Research Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi