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Structure-function relationships of Rad51-Swi5-Sfr1 complex for homologous recombination

Research Project

Project/Area Number 23770105
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Research InstitutionHigh Energy Accelerator Research Organization (2012)
The University of Tokyo (2011)

Principal Investigator

KUWABARA Naoyuki  大学共同利用機関法人高エネルギー加速器研究機構, 物質構造科学研究所, 研究員 (70506253)

Research Collaborator SATO Mamoru  横浜市立大学, 大学院・生命ナノシステム科学研究科, 教授 (60170784)
IKEGUCHI Mitsunori  横浜市立大学, 大学院・生命ナノシステム科学研究科, 准教授 (60261955)
IWASAKI Hiroshi  東京工業大学, 大学院・生命理工学研究科, 教授 (60232659)
SHIMIZU Toshiyuki  東京大学, 大学院・薬学系研究科, 教授 (30273858)
Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2012: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2011: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywords相同組換え / DNA 修復 / メディエーター / DNA修復
Research Abstract

In this study, I made focus on the structure-function relationships of Swi5-Sfr1 complex that interacts Rad51. I revealed the complex structure of Swi5 and C-terminal region of Sfr1 by X-ray crystallography and found that this protein complex is essential for Rad51 activation. Furthermore, we showed that Swi5-Sfr1 complex enters the groove of Rad51 filament in the activation process, and intrinsically disorder regions of Sfr1 is important in the process. From these results, I proposed a model of Rad51 activating mechanism by Swi5-Sfr1.

Report

(3 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Research-status Report
  • Research Products

    (12 results)

All 2013 2012 2011

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (7 results)

  • [Journal Article] Structural basis for vitamin D receptor agonism by novel non-secosteroidal ligands2013

    • Author(s)
      Lisa Asano, Ichiaki Ito, Naoyuki Kuwabara, Tsuyoshi Waku, Junn Yanagisawa, Hiroyuki Miyachi, Toshiyuki Shimizu
    • Journal Title

      FEBS lettters

      Volume: 587 Issue: 7 Pages: 957-963

    • DOI

      10.1016/j.febslet.2013.02.028

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Characterisation of an intrinsically disordered protein complex of Swi5-Sfr1 by ion mobility mass spectrometry and small-angle X-ray scattering2013

    • Author(s)
      Saikusa K, Kuwabara N, Kokabu Y, Inoue Y, Sato M, Iwasaki H, Shimizu T, Ikeguchi M, Akashi S
    • Journal Title

      Analys

      Volume: 138 Issue: 5 Pages: 1441-14499

    • DOI

      10.1039/c2an35878f

    • NAID

      120006557136

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mechanistic insights into the activation of Rad51-mediated strand exchange from the structure of a recombination activator, the Swi5-Sfr1 complex2013

    • Author(s)
      N.Kuwabara, Y.Murayama, H.Hashimoto, Y.Kokabu, M.Ikeguchi, M.Sato, K.Mayanagi, Y.Tsutsui, H.Iwasaki,and T.Shimizu
    • Journal Title

      Structure

      Volume: 20 Issue: 3 Pages: 440-449

    • DOI

      10.1016/j.str.2012.01.005

    • Related Report
      2012 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Peroxisome proliferator-activated receptors (PPARs) have multiple binding points2012

    • Author(s)
      Kuwabara N, Oyama T, Tomioka D, Ohashi M, Yanagisawa J, Shimizu T, Miyachi H.
    • Journal Title

      J. Med.Chem.

      Volume: 55 Issue: 2 Pages: 893-902

    • DOI

      10.1021/jm2014293

    • Related Report
      2012 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Fission yeast Swi5-Sfr1 protein complex, an activator of Rad51 recombinase, forms an extremely elongated dogleg-shaped structure2011

    • Author(s)
      Kokabu Y, Murayama Y, Kuwabara N, Oroguchi T, Hashimoto H, Tsutsui Y, Nozaki N, Akashi S, Unzai S, Shimizu T, Iwasaki H, Sato M, Ikeguchi M
    • Journal Title

      J Biol Chem

      Volume: 286 Issue: 50 Pages: 43569-43576

    • DOI

      10.1074/jbc.m111.303339

    • Related Report
      2012 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Presentation] Structural basis of the broad carbohydrates specificity of a fungal galectin from Agrocybe cylindricea2013

    • Author(s)
      Naoyuki Kuwabara, Dan Hu, Jun Hirabayashi, Ryuichi Kato
    • Organizer
      物構研サイエンスフェスタ
    • Place of Presentation
      茨城県
    • Year and Date
      2013-03-14
    • Related Report
      2012 Final Research Report
  • [Presentation] Structural basis of the broad carbohydrates specificity of a fungal galectin from Agrocybe cylindricea2013

    • Author(s)
      Naoyuki Kuwabara, Dan Hu, Jun Hirabayashi, Ryuichi Kato
    • Organizer
      物構研サイエンスフェスタ
    • Place of Presentation
      つくば国際会議場エポカル
    • Related Report
      2012 Annual Research Report
  • [Presentation] Structural basis for vitamin D receptor agonism by novel nonsecosteroidal ligands2012

    • Author(s)
      Lisa Asano, Ichiaki Ito, Naoyuki Kuwabara, Junn Yanagisawa, Hiroyuki Miyachi, Toshiyuki Shimizu
    • Organizer
      AsCA 12
    • Place of Presentation
      オーストラリア アデレード
    • Related Report
      2012 Final Research Report
  • [Presentation] Circular and Linear Dichroism analyses of Swi5/Sfr1/Rad51 complex2011

    • Author(s)
      Naoyuki Kuwabara
    • Organizer
      New frontier of the research in Rad51 recombinase and its accessory proteins
    • Place of Presentation
      フランス パリ
    • Year and Date
      2011-09-28
    • Related Report
      2012 Final Research Report
  • [Presentation] Structural analysis of Swi5-Sfr1 complex, mediators for homologous recombination2011

    • Author(s)
      Naoyuki Kuwabara, Hiroshi Hashimoto, Yuichi Kokabu, Mitsunori Ikeguchi, Mamoru Sato, Kouta Mayanagi, Yasuto Murayama, Hiroshi Iwasaki, Toshiyuki Shimizu
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      大阪府
    • Year and Date
      2011-06-08
    • Related Report
      2012 Final Research Report
  • [Presentation] Circular and Linear Dichroism analyses of Swi5/Sfr1/Rad51 complex2011

    • Author(s)
      N. Kuwabara
    • Organizer
      New frontier of the research in Rad51 recombinase and its accessory proteins
    • Place of Presentation
      フランス、IBPC
    • Related Report
      2011 Research-status Report
  • [Presentation] Strucutual analysis of Swi5-Sfr1 complex, mediators for homologous recombination.2011

    • Author(s)
      N. Kuwabara, H. Hashimoto, Y. Kokabu, M. Ikeguchi, M. Sato, K. Mayanagi, Y. Murayama, H. Iwasaki, T. Shimizu
    • Organizer
      第11回日本蛋白質科 学会年会
    • Place of Presentation
      大阪
    • Related Report
      2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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