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Molecular analyses of RNA silencing amplification system in plants

Research Project

Project/Area Number 24248010
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Plant pathology
Research InstitutionNational Institute of Agrobiological Sciences

Principal Investigator

Tesuo Meshi  国立研究開発法人農業生物資源研究所, その他部局等, その他 (40157813)

Co-Investigator(Kenkyū-buntansha) ISHIKAWA Masayuki  農業生物資源研究所, 植物科学研究領域・植物-微生物間相互作用研究ユニット, ユニット長 (70192482)
YOSHIKAWA Manabu  農業生物資源研究所, 植物科学研究領域・植物-微生物間相互作用研究ユニット, 主任研究員 (80391564)
ISHIBASHI Kazuhiro  農業生物資源研究所, 植物科学研究領域・植物-微生物間相互作用研究ユニット, 主任研究員 (20611742)
Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥43,940,000 (Direct Cost: ¥33,800,000、Indirect Cost: ¥10,140,000)
Fiscal Year 2015: ¥11,700,000 (Direct Cost: ¥9,000,000、Indirect Cost: ¥2,700,000)
Fiscal Year 2014: ¥11,180,000 (Direct Cost: ¥8,600,000、Indirect Cost: ¥2,580,000)
Fiscal Year 2013: ¥11,180,000 (Direct Cost: ¥8,600,000、Indirect Cost: ¥2,580,000)
Fiscal Year 2012: ¥9,880,000 (Direct Cost: ¥7,600,000、Indirect Cost: ¥2,280,000)
KeywordsRISC複合体 / trans-acting siRNA / microRNA / リボソーム / ウイルス / サプレッサー / RISC / RNAサイレンシングサプレッサー / AGO1 / SGS3
Outline of Final Research Achievements

Plants have an RNA silencing amplification system, in which secondary small interfering RNAs (siRNAs) are produced from RISC-cleaved RNAs. This system plays a crucial role in virus resistance. To elucidate the molecular mechanisms of RNA silencing amplification, we analyzed Arabidopsis microRNA173-triggered trans-acting siRNA production using an in vitro RISC formation system. We discovered that SGS3 forms a complex that contains AGO1 and cleaved RNAs, and stabilizes RISC-cleaved RNAs. We also found that ribosomes associate with TAS2 RNA that had been thought to be non-coding. Further, we showed that a short open reading frame (ORF) that encompasses the microRNA173 target site on TAS2 RNA positively regulates production of tasiRNAs.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (8 results)

All 2016 2015 2014 2013 2012

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Acknowledgement Compliant: 1 results) Presentation (4 results) (of which Invited: 2 results)

  • [Journal Article] A Short Open Reading Frame Encompassing the MicroRNA173 Target Site Plays a Role in trans-Acting Small Interfering RNA Biogenesis2016

    • Author(s)
      Manabu Yoshikawa, Taichiro Iki, Hisataka Numa, Kyoko Miyashita, Tetsuo Meshi, and Masayuki Ishikawa
    • Journal Title

      Plant Physiology

      Volume: 171 Issue: 1 Pages: 359-368

    • DOI

      10.1104/pp.16.00148

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Biogenesis of <i>trans</i>-acting siRNAs, endogenous secondary siRNAs in plants2013

    • Author(s)
      Yoshikawa M
    • Journal Title

      Genes & Genetic Systems

      Volume: 88 Issue: 2 Pages: 77-84

    • DOI

      10.1266/ggs.88.77

    • NAID

      10031183173

    • ISSN
      1341-7568, 1880-5779
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 3’ fragment of miR173-programmed RISC-cleaved RNA is protected from degradation in a complex with RISC and SGS32013

    • Author(s)
      Manabu Yoshikawa
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 110 Issue: 10 Pages: 4117-4122

    • DOI

      10.1073/pnas.1217050110

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cytoplasmic assembly and selective nuclear import of Arabidopsis Argonaute4/siRNA complexes2012

    • Author(s)
      Ruiqiang Ye
    • Journal Title

      Molecular Cell

      Volume: 46 Issue: 6 Pages: 859-870

    • DOI

      10.1016/j.molcel.2012.04.013

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] trans-acting siRNA前駆体TAS2の翻訳とtrans-acting siRNAの生成経路の共役2015

    • Author(s)
      吉川学, 飯哲夫, 石川雅之
    • Organizer
      日本RNA学会
    • Place of Presentation
      札幌市
    • Year and Date
      2015-07-15
    • Related Report
      2015 Annual Research Report
  • [Presentation] シロイヌナズナにおけるtasiRNA生成の分子機構2014

    • Author(s)
      吉川学
    • Organizer
      第55回日本植物生理学会年会
    • Place of Presentation
      富山大学
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] SGS3による切断RNA-RISC複合体の安定化2012

    • Author(s)
      吉川学
    • Organizer
      第14回日本RNA学会年会
    • Place of Presentation
      仙台
    • Related Report
      2012 Annual Research Report
  • [Presentation] Toward controlling tobamovirus multiplication2012

    • Author(s)
      Masayuki Ishikawa
    • Organizer
      2012 FFTC-TUA International Seminar on Emerging Infectious Diseases of Food Crops in Asia
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
    • Invited

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Published: 2013-05-15   Modified: 2019-07-29  

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