The Development of a cloud computing-based annotation system for next-generation sequencing data
| Project/Area Number |
24510273
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| Research Category |
Grant-in-Aid for Scientific Research (C)
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| Allocation Type | Multi-year Fund |
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| Section | 一般 |
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| Research Field |
Genome biology
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| Research Institution | National Institute of Genetics |
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Principal Investigator |
NAGASAKI Hideki 国立遺伝学研究所, 生命情報研究センター, 特任研究員 (70624451)
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| Co-Investigator(Renkei-kenkyūsha) |
KAMINUMA Eli 国立遺伝学研究所, 生命情報研究センター, 助教 (90314559)
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| Project Period (FY) |
2012-04-01 – 2015-03-31
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| Project Status |
Completed (Fiscal Year 2014)
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| Budget Amount *help |
¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2013: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2012: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
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| Keywords | ゲノム / 次世代シーケンサー / 解析パイプライン / クラウド / RNA-Seq / ChIP-Seq / HLA / リシーケンス / SNP / de novoアセンブリ / クラウドコンピューティング / denovo アセンブル |
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| Outline of Final Research Achievements |
High-performance next-generation sequencing (NGS) technologies are advancing genomics and molecular biological research. However, the immense amount of sequence data requires computational skills and suitable hardware resources that are a challenge to molecular biologists. The DNA Data Bank of Japan (DDBJ) of the National Institute of Genetics (NIG) has initiated a cloud computing-based analytical pipeline, the DDBJ Read Annotation Pipeline (DDBJ Pipeline), for a high-throughput annotation of NGS reads. The DDBJ Pipeline offers a user-friendly graphical web interface and processes massive NGS datasets using decentralized processing by NIG supercomputers currently free of charge.
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Report
(4 results)
Research Products
(26 results)
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[Journal Article] DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data.2013
Author(s)
Nagasaki H, Mochizuki T, Kodama Y, Saruhashi S, Morizaki S, Sugawara H, Ohyanagi H, Kurata N, Okubo K, Takagi T, Kaminuma E, Nakamura Y.
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Journal Title
DNA Res.
Volume: 20
Pages: 383-390
Related Report
Peer Reviewed
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[Presentation] HLA解析ツール2015
Author(s)
長崎英樹
Organizer
GalaxyWorkshopTokyo2015
Place of Presentation
東京大学 先端科学技術研究センター
Year and Date
2015-04-28
Related Report
Invited
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