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Molecular mechanism of regulation of mRNA stability and translation by RNA-binding proteins

Research Project

Project/Area Number 24570192
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Molecular biology
Research InstitutionUniversity of Tsukuba

Principal Investigator

IRIE KENJI  筑波大学, 医学医療系, 教授 (90232628)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2014: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2013: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2012: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
KeywordsRNA / 出芽酵母 / 細胞極性 / RNA結合タンパク質 / 細胞壁 / ポリA分解酵素 / 遺伝子発現 / mRNA / 酵母 / 遺伝子発現制御 / RNA結合タンパク質 / ポリA鎖分解酵素 / mRNA / デキャッピング / ポリA分解酵素 / リボソーム
Outline of Final Research Achievements

In this study, we show that PBP1 genetically interacts with CCR4 and KHD1, which encode a cytoplasmic deadenylase and an RNA binding protein, respectively. Ccr4 and Khd1 modulate a signal from Rho1 in the cell wall integrity pathway by regulating the expression of RhoGEF and RhoGAP, and the double deletion of CCR4 and KHD1 confers severe growth defect displaying cell lysis. We found that the pbp1Δ mutation suppressed the growth defect caused by the ccr4Δ khd1Δ mutation. Then we screened novel Pbp1-interacting factors, and found that Pbp1 interacts with ribosomal proteins, Rpl12a and Rpl12b. Similarly to the pbp1Δ mutation, the rpl12aΔ and rpl12bΔ mutation also suppressed the growth defect caused by the ccr4Δ khd1Δ mutation. Our results suggest that Pbp1 is involved in the Ccr4 and Khd1-mediated regulation of cell growth through the association with Rpl12a and Rpl12b.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (15 results)

All 2014 2013 2012 Other

All Journal Article (4 results) (of which Peer Reviewed: 3 results) Presentation (10 results) Remarks (1 results)

  • [Journal Article] ATXN2の酵母オルソログPbp1はリボソーム蛋白質と協調して細胞増殖を制御する2014

    • Author(s)
      木村雄一、入江賢児
    • Journal Title

      医学のあゆみ

      Volume: 250 Pages: 225-226

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Pbp1 is involved in the Ccr4 and Khd1-mediated regulation of cell growth through the association with ribosomal proteins, Rpl12a and Rpl12b.2013

    • Author(s)
      Kimura Y, Irie K, Irie K.
    • Journal Title

      Eukaryotic Cell

      Volume: 12 Issue: 6 Pages: 864-974

    • DOI

      10.1128/ec.00370-12

    • Related Report
      2013 Research-status Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Brap2 Regulates Temporal Control of NF-kB Localization Mediated by Inflammatory Response2013

    • Author(s)
      Takashima 0, Tsuruta F, Kigoshi Y, Nakamura S, Kim J, Katoh MC, Fukuda T, Irie K, Chiba T.
    • Journal Title

      PLoS One

      Volume: 8 Issue: 3 Pages: 58911-58911

    • DOI

      10.1371/journal.pone.0058911

    • Related Report
      2013 Research-status Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Stau1 regulates Dvl2 expression during myoblast differentiation2012

    • Author(s)
      Yamaguchi, et al.
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 417 Issue: 1 Pages: 427-432

    • DOI

      10.1016/j.bbrc.2011.11.133

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 出芽酵母AMPKオルソログSnf1による小胞体ストレス応答制御機構2014

    • Author(s)
      増田 勇人, 水野 智亮, 入江 賢児
    • Organizer
      日本分子生物学会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] The budding yeast AMPK ortholog Snf1 negatively regulates endoplasmic reticulum stress response2014

    • Author(s)
      Yuto Masuda, Tomoaki Mizuno, Kenji Irie
    • Organizer
      The 13th Joint Mini-Symposium 2014 NTU, KU and UT
    • Place of Presentation
      筑波大学健康医科学イノベーション棟8階講堂
    • Year and Date
      2014-09-26 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Pop2 deadenylase and Dhh1 decapping activator negatively regulate LRG1 expression and maintain the yeast cell wall integrity2014

    • Author(s)
      Tetsuro Ohmori, Kenji Irie
    • Organizer
      The 13th Joint Mini-Symposium 2014 NTU, KU and UT
    • Place of Presentation
      筑波大学健康医科学イノベーション棟8階講堂
    • Year and Date
      2014-09-26 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Yuichi KIMURA and Kenji IRIE2014

    • Author(s)
      Functional analysis of translational control through Pbp1
    • Organizer
      The 13th Joint Mini-Symposium 2014 NTU, KU and UT
    • Place of Presentation
      筑波大学健康医科学イノベーション棟8階講堂
    • Year and Date
      2014-09-26 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 木村雄一,入江賢児2014

    • Author(s)
      Functional analysis of translational control through Pbp1
    • Organizer
      酵母遺伝学フォーラム
    • Place of Presentation
      東京大学弥生講堂
    • Year and Date
      2014-09-01 – 2014-09-03
    • Related Report
      2014 Annual Research Report
  • [Presentation] 出芽酵母AMPKオルソログSnf1による小胞体ストレス応答制御機構2014

    • Author(s)
      増田 勇人, 水野 智亮, 入江 賢児
    • Organizer
      酵母遺伝学フォーラム
    • Place of Presentation
      東京大学弥生講堂
    • Year and Date
      2014-09-01 – 2014-09-03
    • Related Report
      2014 Annual Research Report
  • [Presentation] Functional analysis of translational control through Pbp12014

    • Author(s)
      木村雄一,入江賢児
    • Organizer
      日本RNA学会
    • Place of Presentation
      ウインク愛知
    • Year and Date
      2014-07-23 – 2014-07-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] Ccr4とPbp1はRho GAP, Lrg1の発現制御に関わる2012

    • Author(s)
      木村雄一、入江賢児
    • Organizer
      日本RNA学会
    • Place of Presentation
      東北大学百周年記念会館
    • Related Report
      2012 Research-status Report
  • [Presentation] Different regulation of ROM2 and LRG1 expression by Khd1, Ccr4, Pop2, and Dhh1 in the yeast cell wall integrity pathway2012

    • Author(s)
      Xia Li, Kenji Irie
    • Organizer
      日本RNA学会
    • Place of Presentation
      東北大学百周年記念会館
    • Related Report
      2012 Research-status Report
  • [Presentation] Post-transcriptional Regulation of Gene Expression by Khd1, Ccr4, and Pbp12012

    • Author(s)
      Kenji Irie, Yuichi Kimura, Xia Li, Tomoaki Mizuno
    • Organizer
      RNA 2012 : The 17th Annual Meeting of the RNA Society
    • Place of Presentation
      Ann Arbor, Michigan, USA
    • Related Report
      2012 Research-status Report
  • [Remarks] 筑波大学医学医療系分子細胞生物学グループホームページ

    • URL

      http://www.md.tsukuba.ac.jp/basic-med/molcellbiol/index.html

    • Related Report
      2014 Annual Research Report

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Published: 2013-05-31   Modified: 2019-07-29  

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