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Construction of protein network on DNA nanostrucuture as the novel nanoreactor

Research Project

Project/Area Number 24651150
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Nanomaterials/Nanobioscience
Research InstitutionKyoto University

Principal Investigator

NAKATA EIJI  京都大学, エネルギー理工学研究所, 講師 (70467827)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords核酸ナノ構造体 / タンパク質 / ネットワーク / ナノリアクター
Research Abstract

Structural DNA nanotechnology, which includes DNA origami, enables the rapid production of self-assembled nanostructures. One of the key features of this technology is that fully addressable nanoarchitectures of various shapes and geometries are easily designed and constructed. By taking advantage of their addressable nature, DNA nanostructures have been used as scaffolds for the site-directed assembly of functional entities, such as small molecules and nanoparticles. As well as these functional entities, bio-macromolecules such as proteins are a particularly interesting class of molecules to assemble because of their huge functional variability. In this research, we arranged enzymes and on DNA-origami and the function and corabolation of them were confirmed on DNA-origami as the molecular switchboard or nano reactor.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (57 results)

All 2014 2013 2012 Other

All Journal Article (5 results) (of which Peer Reviewed: 2 results) Presentation (50 results) (of which Invited: 4 results) Remarks (2 results)

  • [Journal Article] 2A protein adaptor to locate a functional protein dimer on molecular switchboard2014

    • Author(s)
      Tien Anh Ngo, Eiji Nakata, Masayuki Saimura, Tsutomu Kodaki, Takashi Morii
    • Journal Title

      Methods

      Volume: Vol.67 Pages: 142-150

    • Related Report
      2013 Final Research Report
  • [Journal Article] A protein adaptor to locate a functional protein dimer on molecular switchboard2014

    • Author(s)
      Tien Anh Ngo, Eiji Nakata, Masayuki Saimura, Tsutomu Kodaki, Takashi Morii
    • Journal Title

      Methods

      Volume: 67 Pages: 142-150

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Arranging enzymes and receptors with nanometer-scale precision on molecular switchboards2013

    • Author(s)
      Ngo Anh Tien, Eiji Nakata & Takashi Morii
    • Journal Title

      Journal of Biomolecular Structure and Dynamics

      Volume: Vol31 Pages: 11-15

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Journal Article] Zinc finger proteins for site-specific protein positioning on DNA origami2012

    • Author(s)
      E. Nakata, F.F. Liew, C. Uwatoko, S. Kiyonaka,Y. Mori, Y. Katsuda, M. Endo, H. Sugiyama, T.Morii
    • Journal Title

      Angew Chem. Int. Ed

      Volume: Vol.51, No.10 Pages: 2421-2424

    • Related Report
      2013 Final Research Report
  • [Journal Article] Zinc-Finger Proteins for Site-Specific Protein Positioning on DNA-Origami Structures2012

    • Author(s)
      E.Nakata, FF Liew, C Uwatoko, S Kiyonaka, Y Mori, Y Katsuda, M Endo, H Sugiyama, T Morii
    • Journal Title

      Angew Chem Int Ed

      Volume: 51 Issue: 10 Pages: 2421-2424

    • DOI

      10.1002/anie.201108199

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Construction of a Molecular Switchboard by Using Monomeric and Homodimeric Protein Adaptors2014

    • Author(s)
      Tien Anh Ngo・Eiji Nakata・Masayuki Saimura・Tsutomu Kodaki・Takashi Morii
    • Organizer
      2014 Kyoto-Ajou Joint Symposium
    • Place of Presentation
      Kyoto University
    • Year and Date
      2014-02-25
    • Related Report
      2013 Final Research Report
  • [Presentation] Molecular Switchboard : Assembling Multiple Proteins on DNA Origami2014

    • Author(s)
      Eiji Nakata・Takashi Morii
    • Organizer
      The second Kyoto-Bristol symposium 2014
    • Place of Presentation
      Kyoto University
    • Year and Date
      2014-01-09
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Construction of organized assembly of enzymes on DNA origami2014

    • Author(s)
      Tien Anh Ngo・Eiji Nakata・Masayuki Saimura・Tsutomu Kodaki・Takashi Morii
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学東山キャンパス
    • Related Report
      2013 Final Research Report
  • [Presentation] Applications of sequence-specific DNA binding adaptors for assembling proteins on DNA origami2014

    • Author(s)
      Huyen Thi Thu Dinh・Eiji Nakta・Anh Tien Ngo・Hiroki Ashida・Akiho Yokota・Takashi Morii
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学東山キャンパス
    • Related Report
      2013 Final Research Report
  • [Presentation] DNAオリガミへの機能性タンパク質の1分子固定化 : 共有結合型DNA結合アダプターの開発2014

    • Author(s)
      佐々木謙太・戸田昂人・中田栄司・森井孝
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学東山キャンパス
    • Related Report
      2013 Final Research Report
  • [Presentation] DNAオリガミを用いたRNAアプタマーの集積効果の評価2014

    • Author(s)
      吉村祐輝・ANNONI Chiara・仲野瞬・中田栄司・GELMI Maria LUISA・森井孝
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学東山キャンパス
    • Related Report
      2013 Final Research Report
  • [Presentation] DNAオリガミへの機能性タンパク質の1分子固定化 : DNA結合アダプターとDNAオリガミとの共有結合形成2014

    • Author(s)
      戸田昂人・Ngo Anh Tien・Huyen Thi Thu Dinh・佐々木謙太・中田栄司・森井孝
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学東山キャンパス
    • Related Report
      2013 Final Research Report
  • [Presentation] Site-specific covalent modification of DNA origami by functional proteins2013

    • Author(s)
      Eiji Nakata, Huyen Thi Thu Dinh, Tien Anh Ngo, Masayuki Saimura, Takashi Morii
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kanagawa University
    • Year and Date
      2013-11-14
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Development of a homodimeric adaptor for constructing an artificial protein assembly on molecular switchboard2013

    • Author(s)
      Tien Anh Ngo, Eiji Nakata, Masayuki Saimura, Tsutomu Kodaki, Takashi Morii
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kanagawa University
    • Year and Date
      2013-11-14
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Construction of a molecular switchboard by assembling ribonucleopeptide biosensors2013

    • Author(s)
      Chiara ANNONI・Fong Fong Liew・Shun Nakano・Eiji Nakata・Maria LuisaGELMI・Takashi Morii
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kanagawa University
    • Year and Date
      2013-11-13
    • Related Report
      2013 Final Research Report
  • [Presentation] アダプターを用いたDNAオリガミへのタンパク質1分子配置2013

    • Author(s)
      森井孝・中田栄司・仲野瞬
    • Organizer
      戦略目標「プロセスインテグレーションによる次世代ナノシステムの創製」
    • Place of Presentation
      コクヨホール東京ショールーム2階
    • Year and Date
      2013-10-17
    • Related Report
      2013 Final Research Report
  • [Presentation] DNA origami上に機能性タンパク質を固定化した分子スイッチボードの開発2013

    • Author(s)
      中田栄司・Ngo Tien Anh・仲野瞬・才村正幸・小瀧努・森井孝
    • Organizer
      第7回バイオ関連シンポジウム
    • Place of Presentation
      名古屋大学
    • Year and Date
      2013-09-27
    • Related Report
      2013 Final Research Report
  • [Presentation] Development of an aritificial protein assembly on molecular switchboard2013

    • Author(s)
      Tien Anh Ngo, Eiji Nakata, Masayuki Saimura, Shun Nakano, Tsutomu Kodaki, Takashi Mori
    • Organizer
      第7回バイオ関連シンポジウム
    • Place of Presentation
      名古屋大学
    • Year and Date
      2013-09-27
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] アダプターを用いたDNAオリガミへのタンパク質1分子配置2013

    • Author(s)
      森井孝・中田栄司・仲野瞬
    • Organizer
      CREST「プロセスインテグレーションに向けた高機能ナノ構造体の創出」領域
    • Place of Presentation
      コクヨホール東京ショールーム2階
    • Year and Date
      2013-06-04
    • Related Report
      2013 Final Research Report
  • [Presentation] 生物から学んだ分子コンビナートへの挑戦2013

    • Author(s)
      中田栄司
    • Organizer
      第18回エネルギー理工学研究所公開講演会
    • Place of Presentation
      京都大学
    • Year and Date
      2013-05-12
    • Related Report
      2013 Final Research Report
  • [Presentation] 核酸ナノ構造体を利用した高効率な物質変換システムの構築2013

    • Author(s)
      中田栄司
    • Organizer
      平成24年度附属エネルギー複合機構研究センター共同研究成果報告会
    • Place of Presentation
      京都大学
    • Year and Date
      2013-04-05
    • Related Report
      2013 Final Research Report
  • [Presentation] Construction of a molecular switchboard by using monomeric and homodimeric protein adaptors2013

    • Author(s)
      Tien Anh Ngo, Eiji Nakata, Masayuki Saimura, Shun Nakano, Tsutomu Kodaki,Takashi Morii
    • Organizer
      Gordon Reseach Conforence
    • Place of Presentation
      Proctor Academy
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] 亜鉛フィンガータンパク質を用いたDNAオリガミへのタンパク質1分子固定化技術の開発2013

    • Author(s)
      西口泰裕,中田栄司,上村昇平,N.A. Tien,才村正幸,森井孝
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学びわこ・くさつキャンパス、滋賀県草津市
    • Related Report
      2013 Final Research Report
  • [Presentation] 二量体タンパク質を分子スイッチボードに配置するアダプターの開発2013

    • Author(s)
      T.A. Ngo,中田栄司,才村正幸,森井孝
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学びわこ・くさつキャンパス、滋賀県草津市
    • Related Report
      2013 Final Research Report
  • [Presentation] DNA origamiを用いたイオンチャネル複合体の高度集積化2013

    • Author(s)
      小山祥平,清中茂樹,中田栄司,鈴木勇輝,日高久美,森恵美子,遠藤政幸,森井孝,杉山弘,森泰生
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学びわこ・くさつキャンパス、滋賀県草津市
    • Related Report
      2013 Final Research Report
  • [Presentation] リボヌクレオペプチドリセプターを用いたナノ集成体の構築2013

    • Author(s)
      劉芳芳,C. Annoni,田村友樹,仲野瞬,中田栄司,森井孝
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学びわこ・くさつキャンパス、滋賀県草津市
    • Related Report
      2013 Final Research Report
  • [Presentation] Development of an artificial protein assembly on molecular switchboard by using DNA binding adaptors2013

    • Author(s)
      Eiji Nakata, Takashi Morii
    • Organizer
      2013NNBS
    • Place of Presentation
      Kyushu University
    • Related Report
      2013 Annual Research Report
  • [Presentation] 亜鉛フィンガータンパク質を用いたDNAオリガミへのタンパク質1分子固定化技術の開発2013

    • Author(s)
      西口泰裕,中田栄司,上村昇平,N.A. Tien,才村正幸,森井孝
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 びわこ・くさつキャンパス、滋賀県草津市
    • Related Report
      2012 Research-status Report
  • [Presentation] 二量体タンパク質を分子スイッチボードに配置するアダプターの開発2013

    • Author(s)
      T.A. Ngo,中田栄司,才村正幸,森井孝
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 びわこ・くさつキャンパス、滋賀県草津市
    • Related Report
      2012 Research-status Report
  • [Presentation] DNA origami を用いたイオンチャネル複2013

    • Author(s)
      小山祥平,清中茂樹,中田栄司,鈴木勇輝,日高久美,森恵美子,遠藤政幸,森井孝,杉山弘,森泰生
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 びわこ・くさつキャンパス、滋賀県草津市
    • Related Report
      2012 Research-status Report
  • [Presentation] リボヌクレオペプチドリセプターを用いたナノ集成体の構築2013

    • Author(s)
      劉芳芳,C. Annoni,田村友樹,仲野瞬,中田栄司,森井孝
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学 びわこ・くさつキャンパス、滋賀県草津市
    • Related Report
      2012 Research-status Report
  • [Presentation] アダプターを用いたDNAオリガミへのタンパク質1分子配置,プロセスインテグレーションによる次世代ナノシステムの創製2012

    • Author(s)
      中田栄司,森井孝
    • Organizer
      3領域合同会議
    • Place of Presentation
      科学技術振興機構東京本部、埼玉県川口市
    • Year and Date
      2012-10-05
    • Related Report
      2013 Final Research Report
  • [Presentation] Using DNA binding proteins for site-specific positioning on DNA origami2012

    • Author(s)
      E. Nakata, T. Morii
    • Organizer
      The 5th"MEXT Project of Integrated Research on ChemicalSynthesis"Forum
    • Place of Presentation
      京都大学宇治キャンパス、宇治市
    • Year and Date
      2012-09-15
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] アダプターを用いたDNAオリガミへのタンパク質配置,「ナノ構造体」2012

    • Author(s)
      中田栄司,森井孝
    • Organizer
      第2回公開シンポジウム
    • Place of Presentation
      コクヨホール,東京都港区
    • Year and Date
      2012-06-12
    • Related Report
      2013 Final Research Report
  • [Presentation] DNA-binding Proteins as the Adaptor for Locating Functional Proteins on DNA Nanostructure2012

    • Author(s)
      T.A. Ngo,中田栄司,森井孝
    • Organizer
      第59回日本生化学会近畿支部例会
    • Place of Presentation
      京都大学宇治キャンパス、宇治市
    • Year and Date
      2012-05-12
    • Related Report
      2013 Final Research Report
  • [Presentation] Using DNA binding proteins for site-specific positioning of proteins on DNA origami2012

    • Author(s)
      E. Nakata, N.A. Tien, F.F. Liew, T. Morii
    • Organizer
      ACBC2012
    • Place of Presentation
      サザンビーチホテル&リゾート沖縄、沖縄県糸満市
    • Related Report
      2013 Final Research Report
  • [Presentation] DNA-binding Proteins as the Adaptor for Locating Functional Proteins on DNA Nanostructure2012

    • Author(s)
      T.A. Ngo,中田栄司,森井孝
    • Organizer
      第59回日本生化学会近畿支部例会
    • Place of Presentation
      京都大学 宇治キャンパス、宇治市
    • Related Report
      2012 Research-status Report
  • [Presentation] Deverlopment of an Adaptor for Locating Functional Proteins on DNA Nanoarchitechtures.2012

    • Author(s)
      T.A. Ngo, E. Nakata, T. Morii
    • Organizer
      4th G-COE International Symposium
    • Place of Presentation
      Bankoku, Thailand
    • Related Report
      2012 Research-status Report
  • [Presentation] アダプターを用いたDNAオリガミへのタンパク質配置2012

    • Author(s)
      中田栄司,森井孝
    • Organizer
      「ナノ構造体」第2回公開シンポジ ウム
    • Place of Presentation
      コクヨホール, 東京都港区
    • Related Report
      2012 Research-status Report
  • [Presentation] Using DNA binding proteins for site-specific positioning of proteins on DNA origami2012

    • Author(s)
      E. Nakata, N.A. Tien, F.F. Liew, T. Morii
    • Organizer
      ACBC2012
    • Place of Presentation
      サザンビーチホテル&リゾート沖縄、沖縄県糸満市
    • Related Report
      2012 Research-status Report
  • [Presentation] Using DNA binding proteins for site-specific positioning on DNA origami2012

    • Author(s)
      E. Nakata, T. Morii
    • Organizer
      The 5th “MEXT Project of Integrated Research on Chemical Synthesis” Forum
    • Place of Presentation
      京都大学 宇治キャンパス、宇治市
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] アダプターを用いたDNAオリガミへのタンパク質1分子配置2012

    • Author(s)
      中田栄司,森井孝
    • Organizer
      「プロセスインテグレーションによる次世代ナノシステムの創製」3領域合同会議
    • Place of Presentation
      科学技術振興機構 東京本部、埼玉県川口市
    • Related Report
      2012 Research-status Report
  • [Presentation] 核酸ナノ構造体を利用した高効率な物質変換システムの構築

    • Author(s)
      中田栄司
    • Organizer
      平成24年度 附属エネルギー複合機構研究センター共同研究成果報告会
    • Place of Presentation
      京都大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] 生物から学んだ分子コンビナートへの挑戦

    • Author(s)
      中田 栄司
    • Organizer
      第18回エネルギー理工学研究所公開講演会
    • Place of Presentation
      京都大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] アダプターを用いたDNAオリガミへのタンパク質1分子配置

    • Author(s)
      森井 孝・中田 栄司・仲野 瞬
    • Organizer
      CREST「プロセスインテグレーションに向けた高機能ナノ構造体の創出」領域
    • Place of Presentation
      コクヨホール 東京ショールーム 2階
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNA origami上に機能性タンパク質を固定化した分子スイッチボードの開発

    • Author(s)
      中田 栄司・Ngo Tien Anh・仲野 瞬・才村 正幸・小瀧 努・森井 孝
    • Organizer
      第7回バイオ関連シンポジウム
    • Place of Presentation
      名古屋大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] アダプターを用いたDNAオリガミへのタンパク質1分子配置

    • Author(s)
      森井 孝・中田 栄司・仲野 瞬
    • Organizer
      戦略目標「プロセスインテグレーションによる次世代ナノシステムの創製」
    • Place of Presentation
      コクヨホール 東京ショールーム 2階
    • Related Report
      2013 Annual Research Report
  • [Presentation] Construction of a molecular switchboard by assembling ribonucleopeptide biosensors

    • Author(s)
      Chiara ANNONI・Fong Fong Liew・Shun Nakano・Eiji Nakata・Maria Luisa GELMI・Takashi Morii
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Kanagawa University
    • Related Report
      2013 Annual Research Report
  • [Presentation] Molecular Switchboard: Assembling Multiple Proteins on DNA Origami

    • Author(s)
      Eiji Nakata・Takashi Morii
    • Organizer
      The second Kyoto-Bristol symposium 2014
    • Place of Presentation
      Kyoto University
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Construction of a Molecular Switchboard by Using Monomeric and Homodimeric Protein Adaptors

    • Author(s)
      Tien Anh Ngo・Eiji Nakata・Masayuki Saimura・Tsutomu Kodaki・Takashi Morii
    • Organizer
      2014 Kyoto-Ajou Joint Symposium
    • Place of Presentation
      Kyoto University
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNAオリガミを用いたRNAアプタマーの集積効果の評価

    • Author(s)
      吉村 祐輝・ ANNONI Chiara・仲野 瞬・中田 栄司・GELMI Maria LUISA・森井 孝
    • Organizer
      日本化学会第94春季年会(2014)
    • Place of Presentation
      名古屋大学 東山キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNAオリガミへの機能性タンパク質の1分子固定化 :共有結合型DNA結合アダプターの開発

    • Author(s)
      佐々木 謙太・戸田 昂人・中田 栄司・森井 孝
    • Organizer
      日本化学会第94春季年会(2014)
    • Place of Presentation
      名古屋大学 東山キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNAオリガミへの機能性タンパク質の1分子固定化:DNA結合アダプターとDNAオリガミとの共有結合形成

    • Author(s)
      戸田 昂人・Ngo Anh Tien・Huyen Thi Thu Dinh・佐々木 謙太・中田 栄司・森井 孝
    • Organizer
      日本化学会第94春季年会(2014)
    • Place of Presentation
      名古屋大学 東山キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] Construction of organized assembly of enzymes on DNA origami

    • Author(s)
      Tien Anh Ngo・Eiji Nakata・Masayuki Saimura・Tsutomu Kodaki・Takashi Morii
    • Organizer
      日本化学会第94春季年会(2014)
    • Place of Presentation
      名古屋大学 東山キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] Applications of sequence-specific DNA binding adaptors for assembling proteins on DNA origami

    • Author(s)
      Huyen Thi Thu Dinh・Eiji Nakta・Anh Tien Ngo・Hiroki Ashida・Akiho Yokota・Takashi Morii
    • Organizer
      日本化学会第94春季年会(2014)
    • Place of Presentation
      名古屋大学 東山キャンパス
    • Related Report
      2013 Annual Research Report
  • [Remarks] 京都大学・エネルギー理工学研究所・生物機能科学研究分野・森井研究室

    • URL

      http://www.iae.kyoto-u.ac.jp/material/a-12_j.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 研究内容

    • URL

      http://www.iae.kyoto-u.ac.jp/material/jp/research/detail_02.html

    • Related Report
      2012 Research-status Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

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