• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Analysis on cell filament and phenotypic plasticity of Eschericia coli using microfluid system

Research Project

Project/Area Number 24657014
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Ecology/Environment
Research InstitutionThe University of Tokyo

Principal Investigator

SHIMADA Masakazu  東京大学, 大学院情報学環, 教授 (40178950)

Co-Investigator(Renkei-kenkyūsha) WKAMOTO Yuichi  東京大学, 大学院総合文化研究科, 准教授 (30517884)
YOSHIDA Tkehito  東京大学, 大学院総合文化研究科, 准教授 (40447321)
OHBAYASHI Kako  東京大学, 大学院総合文化研究科, 特任研究員 (20448202)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2014: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2013: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2012: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords一細胞培養系 / 大腸菌 / 細胞伸長 / 表現型可塑性 / 細胞密度 / recA遺伝子発現 / 環境ストレス / 1細胞培養計測系 / SOS応答 / recA遺伝子の発現 / 密度依存性 / プロモーター活性 / 細胞分裂 / 変動環境 / ストレス / 貧栄養環境 / SOS遺伝子の発現 / マイクロ流路 / 貧栄養 / SOS反応 / 遺伝的順応
Outline of Final Research Achievements

Using the single cell incubation, we analyzed three potential factors affecting the cell filament formation of Escherichia coli ; (A) the enemy avoidance hypothesis, (B) the cell performance enhanced at a low density, and (C) the environmental stress. We analyzed relationship of cell filament to cell density and recA gene expression in the batch incubation. Results showed that recA gene was highly expressed in some cells (“high recA cell”) and that they were elongated. The higher the cell density became, the higher frequencies of filament cells and high recA cells showed. Increase of cell density results in increasing wastes and insufficient trophic matters, then environmental stress increases, following the cell filament formation and the recA gene expression.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (8 results)

All 2013 Other

All Journal Article (3 results) (of which Peer Reviewed: 3 results) Presentation (2 results) Remarks (3 results)

  • [Journal Article] Sex allocation pattern of the diatom Cyclotella meneghiniana.2013

    • Author(s)
      Shirokawa, Y. and Shimada, M.
    • Journal Title

      Proc. R. Soc. Biol. Sci.

      Volume: 280 Issue: 1761 Pages: 20130503-20130503

    • DOI

      10.1098/rspb.2013.0503

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Sex allocation pattern of the diatom Cyclotella meneghiniana.2013

    • Author(s)
      Shirokawa Y. and Shimada M.
    • Journal Title

      Proceedings - Royal Society. Biological sciences

      Volume: 280

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] DynamicPersistence of Antibiotic-StressedMycobacteria2013

    • Author(s)
      Wakamoto, Y., Dhar, N., Chait, R.,Schneider, K., Signorino-Gelo, F.,Leibler, S., McKinney, J. D.
    • Journal Title

      Science

      Volume: 339(6115) Issue: 6115 Pages: 91-95

    • DOI

      10.1126/science.1229858

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Inconsistency between population and single cell growth rates revealed by dynamics cytometer.

    • Author(s)
      Wakamoto, Y.
    • Organizer
      第50回日本生物物理学会
    • Place of Presentation
      名古屋大学(愛知県、名古屋市)
    • Related Report
      2012 Research-status Report
  • [Presentation] Phenomenological rules behind clonal proliferation of bacteria.

    • Author(s)
      Wakamoto, Y.
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Related Report
      2012 Research-status Report
  • [Remarks] Shimada-Lab

    • URL

      http://park.itc.u-tokyo.ac.jp/shimada-lab/

    • Related Report
      2014 Annual Research Report
  • [Remarks] Shimada-Lab

    • URL

      http://park.itc.u-tokyo.ac.jp/shimada-lab/

    • Related Report
      2013 Research-status Report
  • [Remarks] Shimada-Lab

    • URL

      http://park.itc.u-tokyo.ac.jp/shimada-lab/

    • Related Report
      2012 Research-status Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi