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Development of a systematic method to screen DNAs to make gene expression stable and analysis of the DNAs.

Research Project

Project/Area Number 24658012
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Breeding science
Research InstitutionNational Agriculture and Food Research Organization (2014)
National Institute of Agrobiological Sciences (2012-2013)

Principal Investigator

KISHIMOTO Naoki  独立行政法人農業・食品産業技術総合研究機構, 作物研究所企画管理室, 企画チーム長 (00370651)

Co-Investigator(Renkei-kenkyūsha) MITSUHARA Ichiro  独立行政法人農業生物資源研究所, 植物科学研究領域, 上級研究員 (80370683)
Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2014: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2013: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2012: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Keywordsバイオテクノロジー / 植物 / 遺伝子 / サイレンシング / 育種学
Outline of Final Research Achievements

To screen novel DNA fragments showing ability to circumvent position effects in eukaryote genomes, including transcriptional gene silencing (TGS) of transgenes, I planned to establish a method for screening DNAs suppress TGS (Anti-silencing regions: ASRs) from plant genome and to try screening of random DNA library from plant genome using the method. To develop a systematic method to screen such DNAs, I applied the concept of the screening method in Kishimoto et al. (2013), which use a silenced transgenic tobacco plant in which secondary introduced transgene shows obligatory promoter-homology dependent TGS, to this study. I developed a screening method to assay abilities of DNAs suppressing TGS, based on the phenomena that Arabidopsis FWA genomic transgene shows obligatory TGS in the genome. Using this method, I determined which region to suppress TGS most efficiently in ASR602 found by Kishimoto et al. (2013). However I could not construct random genomic library for the screening.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (7 results)

All 2013 2012 Other

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (4 results) Remarks (1 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] DNA Elements Reducing Transcriptional Gene Silencing Revealed by a Novel Screening Strategy.2013

    • Author(s)
      Kishimoto N, Nagai J, Kinoshita T, Ueno K, Ohashi Y, Mitsuhara I
    • Journal Title

      PLoS ONE

      Volume: 8 Issue: 1 Pages: e54670-e54670

    • DOI

      10.1371/journal.pone.0054670

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 新規スクリーニング法により単離された転写型遺伝子サイレンシングを軽減するDNAエレメント.2012

    • Author(s)
      岸本直己・長井純一・木下剛仁・上野敬一郎・大橋祐子・光原一朗
    • Organizer
      第35回日本分子生物学会年会ワークショップ講演 4W5I「遺伝子サイレンシング:その進化的普遍性と多様性」.
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Related Report
      2012 Research-status Report
  • [Presentation] Isolation of DNA elements reducing transcriptional gene silencing by a novel screening strategy.2012

    • Author(s)
      Kishimoto N., Nagai, J., Kinoshita, T., Ueno, K., Ohashi, Y., Mitsuhara I.
    • Organizer
      COLD SPRING HARBOR ASIA CONFERENCES (Oral session ) “Plant Epigenetics, Stress and Evolution”
    • Place of Presentation
      中華人民共和国、蘇州独墅湖会議センター
    • Related Report
      2012 Research-status Report
  • [Presentation] 転写型遺伝子不活性化(transcriptional gene silencing)を抑制するDNA配列のスクリーニング法の開発.2012

    • Author(s)
      長井純一・木下剛仁・岸本直己・上野敬一郎・大橋祐子・光原一朗
    • Organizer
      第30回日本植物細胞分子生物学会大会口頭発表.
    • Place of Presentation
      奈良先端科学技術大学院大学
    • Related Report
      2012 Research-status Report
  • [Presentation] ミヤコグサから単離したTGS抑制エレメントによるプロモーターコピー数に依存したサイレンシングの回避.2012

    • Author(s)
      木下剛仁・長井純一・岸本直己・上野敬一郎・大橋祐子・光原一朗
    • Organizer
      日本育種学会第122回講演会口頭発表.
    • Place of Presentation
      京都産業大学
    • Related Report
      2012 Research-status Report
  • [Remarks] “遺伝子不活性化を防ぐDNA配列”の探索法

    • URL

      http://www.nias.affrc.go.jp/seika/nias/h24/nias02401.html

    • Related Report
      2013 Research-status Report
  • [Patent(Industrial Property Rights)] サイレンシング抑制因子およびその取得方法2012

    • Inventor(s)
      光原一朗、岸本直己
    • Industrial Property Rights Holder
      農業生物資源研究所
    • Industrial Property Rights Type
      特許
    • Patent Publication Number
      2013-063041
    • Filing Date
      2012-09-16
    • Acquisition Date
      2013-04-11
    • Related Report
      2013 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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