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Studies on oligotrophic mutants of an aerobic heterotrophic bacterium

Research Project

Project/Area Number 24658068
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Applied microbiology
Research InstitutionTohoku University

Principal Investigator

NAGATA Yuji  東北大学, 生命科学研究科, 准教授 (30237531)

Co-Investigator(Kenkyū-buntansha) TSUDA Masataka  東北大学, 大学院生命科学研究科, 教授 (90172022)
OHTSUBO Yoshiyuki  東北大学, 大学院生命科学研究科, 助教 (40342761)
Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords炭酸固定 / 独立栄養細菌 / 環境細菌 / 極貧有機炭素源環境 / 微生物機能開発
Research Abstract

An aerobic and heterotrophic bacterium Sphingobium japonicum UT26 shows oligotrophic growth phenotype, i.e., growth on minimal salt medium without the supply of any carbon source, by the over expression of the adhX gene. Transposon mutagenesis toward the UT26 variant over-expressing the adhX gene and the subsequent analysis of the mutants demonstrated that the putative acetyl-CoA synthetase, pyruvate/phosphate dikinase, and isocitrate lyase genes are necessary for the oligotrophic phenotype. By combining with the genome information of UT26, it was strongly suggested that glyoxylate cycle accompanying with the CO2-fixation process catalyzed by phosphoenolpyruvate carboxylase is involved in the oligotrophic phenotype of the UT26 variant.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (85 results)

All 2014 2013 2012

All Journal Article (18 results) (of which Peer Reviewed: 18 results,  Open Access: 1 results) Presentation (63 results) (of which Invited: 5 results) Book (4 results)

  • [Journal Article] Complete Genome Sequence of Pseudomonas sp. Strain TKP, Isolated from a gamma-Hexachlorocyclohexane-Degrading Mixed Culture2014

    • Author(s)
      Ohtsubo Y, Kishida K, Sato T, Tabata M, Kawasumi T, Ogura Y, Hayashi T, Tsuda M, Nagata Y
    • Journal Title

      Genome announcements

      Volume: 2 Issue: 1

    • DOI

      10.1128/genomea.01241-13

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Complete genome sequence of the thermophilic PCB degrader Geobacillus sp. JF8 (NBRC 109937)2014

    • Author(s)
      Shintani, M., Y. Ohtsubo, K. Fukuda, A. Hosoyama, S. Ohji, A. Yamazoe, N. Fujita, Y. Nagata, M. Tsuda, T. Hatta, and K. Kimbara
    • Journal Title

      Genome Announcements

      Volume: 2 Issue: 1

    • DOI

      10.1128/genomea.01213-13

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Complete genome sequence of Pseudomonas aeruginosa MTB-1 isolated from a microbial community enriched by the technical formulation of hexachlorocyclohexane.2014

    • Author(s)
      Ohtsubo, Y., T. Sato, K. Kishida, M. Tabata, Y. Ogura, T. Hayashi, M. Tsuda, and Y. Nagata
    • Journal Title

      Genome Announcements

      Volume: 2 Issue: 1

    • DOI

      10.1128/genomea.01130-13

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes2013

    • Author(s)
      Mori H, Maruyama F, Kato H, Toyoda A, Dozono A, Ohtsubo Y, Nagata Y, Fujiyama A, Tsuda M Kurokawa K
    • Journal Title

      DNA Res

      Volume: 21 Issue: 2 Pages: 217-227

    • DOI

      10.1093/dnares/dst052

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of Ralstonia pickettii DTP0602, a 2,4,6-Trichlorophenol Degrader2013

    • Author(s)
      Ohtsubo Y, Fujita N, Nagata Y, Tsuda M, Iwasaki T, Hatta T.
    • Journal Title

      Genome Announcements

      Volume: 1 Issue: 6

    • DOI

      10.1128/genomea.00903-13

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Inhibitory effect of Pseudomonas putida nitrogen-related phosphotransferase system on conjugative transfer of IncP-9 plasmid from Escherichia coli2013

    • Author(s)
      Inoue K, Miyazaki R, Ohtsubo Y, Nagata Y, Tsuda M
    • Journal Title

      FEMS microbiology letters

      Volume: 345 Issue: 2 Pages: 102-109

    • DOI

      10.1111/1574-6968.12188

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Complete Genome Sequence of the γ-Hexachlorocyclohexane-Degrading Bacterium Sphingomonas sp. Strain MM-1.2013

    • Author(s)
      Tabata M, Ohtsubo Y, Ohhata S, Tsuda M, Nagata Y.
    • Journal Title

      Genome Announc

      Volume: 1 Issue: 3

    • DOI

      10.1128/genomea.00247-13

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure and site-directed mutagenesis analyses of haloalkane dehalogenase LinB from Sphingobium sp. MI1205.2013

    • Author(s)
      Masahiko Okai, Jun Ohtsuka, Fabiana L. Imai, Tomoko Mase, Ryota Moriuchi, Masataka Tsuda, Koji Nagata, Yuji Nagata, Masaru Tanokura
    • Journal Title

      J. Bacteriol.

      Volume: 195 Issue: 11 Pages: 2642-2651

    • DOI

      10.1128/jb.02020-12

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] 機能相補による芳香族化合物複合汚染土壌からの新規分解酵素遺伝子の検索2013

    • Author(s)
      永山浩史、菅原智詞、遠藤諒、加藤広海、大坪嘉行、永田裕二、津田雅孝
    • Journal Title

      Journal of Environmental Biotechnology

      Volume: 13(1) Pages: 51-56

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] The effect of a unique halide-stabilizing residue on the catalytic properties of haloalkane dehalogenase DatA from Agrobacterium tumefacience C582013

    • Author(s)
      Hassan, K. A. Gora, J. Brezvsky, R. Chaloupkova, H. Moskalikova, A. Fortova, Y. Nagata, J. Damborsky, Z. Prokop
    • Journal Title

      FEBS J.

      Volume: 280 Issue: 13 Pages: 3149-3159

    • DOI

      10.1111/febs.12238

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Coinetgrate-resolution of toluene-catabolic transposon Tn46512013

    • Author(s)
      Yano, H., H. Genka, Y. Ohtsubo, Y. Nagata, E.M. Top, M. Tsuda
    • Journal Title

      Plasmid

      Volume: 69 Issue: 1 Pages: 24-35

    • DOI

      10.1016/j.plasmid.2012.07.004

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Complete genome sequence of Acidovorax sp. KKS102, a polychlorinated biphenyl-degrading strain2012

    • Author(s)
      Ohtsubo, Y., F. Maruyama, H. Mitsui, Y. Nagata, M. Tsuda
    • Journal Title

      J Bacteriol

      Volume: 194 Issue: 24 Pages: 6970-6971

    • DOI

      10.1128/jb.01848-12

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of IncP-7 plasmids2012

    • Author(s)
      Miyakoshi, M., M. Shintani, K. Inoue, T. Terabayashi, F. Sai, M. Ohkuma, H. Nojiri, Y. Nagata, M. Tsuda
    • Journal Title

      Environ Microbiol

      Volume: 14 Issue: 11 Pages: 2946-2959

    • DOI

      10.1111/j.1462-2920.2012.02861.x

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray analysis of the haloalkane dehalogenase DatA from Agrobacterium tumefaciens C582012

    • Author(s)
      Mase, T., H. Yabuki, M. Okai, J. Ohtsuka, F. L. Imai, Y. Nagata, and M. Tanokura
    • Journal Title

      Acta Crystallographica Section F

      Volume: F68 Issue: 6 Pages: 652-654

    • DOI

      10.1107/s1744309112013942

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element2012

    • Author(s)
      Ohtsubo Y., Y. Ishibashi, H. Naganawa, S. Hirokawa, S. Atobe, Y. Nagata, M. Tsuda
    • Journal Title

      J Bacteriol

      Volume: 194 Issue: 16 Pages: 4237-4248

    • DOI

      10.1128/jb.00352-12

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Suppression of pleiotrophic phenotypes of Burkholderia multivorans fur mutant by oxyR mutation2012

    • Author(s)
      Kimura, A., S. Yuhara, Y. Ohtsubo, Y. Nagata, and M. Tsuda
    • Journal Title

      Microbiology

      Volume: 158 Issue: 5 Pages: 1284-1293

    • DOI

      10.1099/mic.0.057372-0

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Povotal role of anthranilate dioxygenase genes in the adaptation of Burkholderia multivorans ATCC17616 in soil2012

    • Author(s)
      Nishiyama, E., Y. Ohtsubo, Y. Yamamoto, Y. Nagata, and M. Tsuda
    • Journal Title

      FEMS Microbiology Letters

      Volume: 330 Issue: 1 Pages: 46-55

    • DOI

      10.1111/j.1574-6968.2012.02532.x

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Cloning ofγ-hexachlorocyclohexane dehydrochlorinase gene with its flanking regions from soil byactivity-based screening techniques2012

    • Author(s)
      Ito, M., A. Ono, Y. Ohtsubo, M. Tsuda, and Y. Nagata
    • Journal Title

      European J. Soil Biology

      Volume: 52 Pages: 16-19

    • DOI

      10.1016/j.ejsobi.2012.05.001

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 有機塩素系殺虫剤分解能を有するスフィンゴモナッド細菌株の有機炭素源非添加無機寒天培地での生育を司る機構に関する研究2014

    • Author(s)
      永田裕二,平野丈,宇井博紀,大坪嘉行,津田雅孝
    • Organizer
      日本農芸化学会2014年大会
    • Place of Presentation
      東京(口頭発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] Finishしたゲノム配列のチェックツール: FinishChecker2014

    • Author(s)
      大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      第8回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] Mycobacterium属細菌のフェナントレン分解能に対する非分解菌の効果2014

    • Author(s)
      小川なつみ, 加藤広海, 遠藤諒, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      第8回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] ナフタレン分解プラスミドNAH7のoriTの同定と宿主域の解析2014

    • Author(s)
      岸田康平, 井上慧, 宮崎亮, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      第8回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] 土壌微生物の移植メタゲノム2014

    • Author(s)
      加藤広海, 森宙史, 丸山史人, 豊田敦, 永山浩史, 大坪嘉行, 永田裕二, 藤山秋佐夫, 黒川顕, 津田雅孝
    • Organizer
      第8回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] Burkholderia multivoransのFurを介した転写制御機構の解明2014

    • Author(s)
      佐藤拓哉, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      第8回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] gamma-HCH分解能を有するsphingomonad細菌株における可動性遺伝因子を介したゲノム動態の解析2014

    • Author(s)
      大畑智史, 田端理朗, 荷川取佑記, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      第8回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] フェナントレン分解コンソーシアムにおける非分解優占種細菌の役割2014

    • Author(s)
      小川なつみ, 加藤広海, 遠藤諒, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      日本農芸化学会2014年大会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] IncP-9群NAH7のoriTの同定と接合伝達宿主域に関する研究2014

    • Author(s)
      岸田康平, 井上慧, 宮崎亮, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      日本農芸化学会2014年大会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] Acidvorax sp KKS102のカタボライト調節機構に関わる二成分制御系遺伝子bphPQの解析2014

    • Author(s)
      佐藤旦, 小沼かおり, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      日本農芸化学会2014年大会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivoransにおけるFur依存的な鉄恒常性維持に関与するhemP遺伝子の解析2014

    • Author(s)
      佐藤拓哉, 木村明音, 湯原悟志, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      日本農芸化学会2014年大会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] FinishChecker: 完全決定したつもりのゲノム配列のチェック機能2014

    • Author(s)
      大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      日本農芸化学会2014年大会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] 有機塩素系殺虫剤gamma-hexachlorocyclohexane分解能を有するスフィンゴモナッド細菌群の挿入配列に関する研究2014

    • Author(s)
      荷川取佑記, 大畑智史, 田端理朗, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      日本農芸化学会2014年大会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] 芳香族化合物汚染化土壌メタゲノムから培養非依存的手法により取得したフェノール分解関与遺伝子群の機能解析2014

    • Author(s)
      永山浩史, 菅原智詞, 遠藤諒, 加藤広海, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      日本農芸化学会2014年大会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] 有機塩素系殺虫剤分解能を有するスフィンゴモナッド細菌株の有機炭素源非添加無機寒天培地での生育を司る機構に関する研究2014

    • Author(s)
      永田裕二, 平野丈, 宇井博紀, 大坪嘉行, 津田雅孝
    • Organizer
      日本農芸化学会2014年大会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] 累積置換変異導入によるハロアルカンデハロゲナーゼLinBのbeta-HCH分解活性の機能進化に関する研究2013

    • Author(s)
      永田裕二,森内良太,田中裕興,大坪嘉行,津田雅孝
    • Organizer
      環境バイオテクノロジー学会2013年度大会
    • Place of Presentation
      北九州(口頭発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] 人為起源物質分解細菌の出現と進化2013

    • Author(s)
      永田裕二
    • Organizer
      日本農芸化学会第20回記念フロンティアシンポジウム
    • Place of Presentation
      仙台
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 人為起源環境汚染物質分解能を有するスフィンゴモナス細菌群のゲノムと可動性遺伝因子に関する研究2013

    • Author(s)
      永田裕二、田端理朗、大畑智史、大坪嘉行、津田雅孝
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      東北大学(仙台)(口頭発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] 人為起源物質分解能を有するsphingomonad細菌群のゲノムと可動性遺伝因子2013

    • Author(s)
      永田裕二、大畑智史、田端理朗、大坪嘉行、津田雅孝
    • Organizer
      第7回日本ゲノム微生物学会
    • Place of Presentation
      長浜バイオ大学(長浜)(口頭発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] 累積置換変異導入によるハロアルカンデハロゲナーゼLinBのbeta-HCH分解活性の機能進化に関する研究2013

    • Author(s)
      永田裕二, 森内良太, 田中裕興, 大坪嘉行, 津田雅孝
    • Organizer
      環境バイオテクノロジー学会2013年度大会
    • Place of Presentation
      北九州
    • Related Report
      2013 Annual Research Report
  • [Presentation] 機能発現に基づくメタゲノムライブラリーからの新規芳香族化合物分解酵素遺伝子の取得と解析2013

    • Author(s)
      永山浩史, 菅原智詞, 遠藤諒, 加藤広海, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      環境バイオテクノロジー学会2013年度大会
    • Place of Presentation
      北九州
    • Related Report
      2013 Annual Research Report
  • [Presentation] IncP-9群プラスミドNAH7のoriTの同定及び接合伝達関連遺伝子traFの解析2013

    • Author(s)
      岸田康平, 井上慧, 宮崎亮, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      環境バイオテクノロジー学会2013年度大会
    • Place of Presentation
      北九州
    • Related Report
      2013 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivorans ATCC 17616株の鉄恒常性維持機構の解明2013

    • Author(s)
      佐藤拓哉, 木村明音, 湯原悟志, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      環境バイオテクノロジー学会2013年度大会
    • Place of Presentation
      北九州
    • Related Report
      2013 Annual Research Report
  • [Presentation] IncP-9群プラスミドNAH7のoriTの同定とtraF欠失による宿主域変化2013

    • Author(s)
      岸田康平, 井上慧, 宮崎亮, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      第7回 日本ゲノム微生物学会 若手の会 研究会
    • Place of Presentation
      静岡県駿東郡
    • Related Report
      2013 Annual Research Report
  • [Presentation] Burkholderia multivorans ATCC17616株の鉄恒常性維持機構の解明2013

    • Author(s)
      佐藤拓哉, 木村明音, 湯原悟志, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      第7回 日本ゲノム微生物学会 若手の会 研究会
    • Place of Presentation
      静岡県駿東郡
    • Related Report
      2013 Annual Research Report
  • [Presentation] 土壌微生物の他土壌への移植メタゲノミクス2013

    • Author(s)
      加藤広海, 森宙史, 丸山史人, 豊田敦, 大坪嘉行, 永田裕二, 藤山秋佐夫, 黒川顕, 津田雅孝
    • Organizer
      第29回日本微生物生態学会年次大会
    • Place of Presentation
      鹿児島
    • Related Report
      2013 Annual Research Report
  • [Presentation] Isolation of phenol-catabolic genes by cultivation-independent functional screening from metagenome of soil artificially polluted by aromatic hydrocarbons2013

    • Author(s)
      Hirofumi Nagayama, Tomonori Sugawara, Ryo Endo, Hiromi Kato, Yoshiyuki Ohtsubo, Yuji Nagata, Hiroshi Mori, Ken, Kurokawa, and Masataka Tsuda
    • Organizer
      2nd Thunen Symposium on Soil Metagenomics: mining and learning from metagenomes plus workshop on bioinformatic tools for soil microbiologists
    • Place of Presentation
      Braunschweig, German
    • Related Report
      2013 Annual Research Report
  • [Presentation] Design and experimental validation of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes2013

    • Author(s)
      Hiroshi Mori, Fumito Maruyama, Hiromi Kato, Atsushi Toyoda, Ayumi Dozono, Yoshiyuki Ohtsubo, Yuji Nagata, Asao Fujiyama, Masataka Tsuda, and Ken Kurokawa
    • Organizer
      2nd Thunen Symposium on Soil Metagenomics: mining and learning from metagenomes plus workshop on bioinformatic tools for soil microbiologists
    • Place of Presentation
      Braunschweig, German
    • Related Report
      2013 Annual Research Report
  • [Presentation] リダクターゼ機能相補による新規芳香族化合物分解酵素遺伝子の芳香族化合物複合汚染土壌メタゲノムからの探索2013

    • Author(s)
      永山浩史ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Research-status Report
  • [Presentation] 土壌細菌Burkholderia multivorans ATCC17616株におけるFurの機能及び発現制御機構の解析2013

    • Author(s)
      佐藤拓哉ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Research-status Report
  • [Presentation] gamma-HCH分解能を示すSphingobium属細菌のTKS株とMI1205株の全ゲノム配列決定とgamma-HCH分解関与遺伝子群周辺領域の解析2013

    • Author(s)
      大畑智史ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Research-status Report
  • [Presentation] 人為起源物質分解能を有するsphingomonad細菌群のゲノムと可動性遺伝因子2013

    • Author(s)
      永田裕二ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Research-status Report
  • [Presentation] Finishing関連の3つのツール: GenoFinisher、AceFileViewer、ShortReadManager2013

    • Author(s)
      大坪嘉行ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Research-status Report
  • [Presentation] IncP-9群プラスミドNAH7の接合伝達開始配列の解析2013

    • Author(s)
      岸田康平ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Research-status Report
  • [Presentation] 次世代シーケンサーによる土壌細菌の環境適応遺伝子の新規探索手法 の開発2013

    • Author(s)
      石橋蓉子ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Research-status Report
  • [Presentation] 撹乱に対する土壌微生物のレジリエンス2013

    • Author(s)
      加藤広海ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Research-status Report
  • [Presentation] 細菌群集動態のモデリング2013

    • Author(s)
      伊藤貴広ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Research-status Report
  • [Presentation] 芳香族化合物複合汚染土壌における新規芳香族化合物分解酵素遺伝子の機能相補に基づく探索2013

    • Author(s)
      永山浩史ら
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Research-status Report
  • [Presentation] 人為起源環境汚染物質分解能を有するスフィンゴモナス細菌群のゲノムと可動性遺伝因子に関する研究2013

    • Author(s)
      永田裕二ら
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Research-status Report
  • [Presentation] ハロアルカンデハロゲナーゼ DatAの立体構造解析2013

    • Author(s)
      管 立軍ら
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Research-status Report
  • [Presentation] 多様な細菌のゲノム上に存在するハロアルカンデハロゲナーゼの機能解析2013

    • Author(s)
      田中裕興ら
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Research-status Report
  • [Presentation] IncP-9群 NAH7接合伝達系のoriTを中心とした解析2013

    • Author(s)
      岸田康平ら
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Research-status Report
  • [Presentation] フィニッシング支援ツールGenoFinisherとAceFileViewer2013

    • Author(s)
      大坪嘉行ら
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Research-status Report
  • [Presentation] γ-HCH分解細菌Sphingomonas sp. MM-1株が有する多重プラスミドに関する研究2013

    • Author(s)
      田端理朗ら
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Research-status Report
  • [Presentation] 人為起源物質分解細菌の出現と進化2013

    • Author(s)
      永田裕二
    • Organizer
      日本農芸化学会 第20回記念フロンティアシンポジウム
    • Place of Presentation
      仙台
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] 有機塩素系殺虫剤gamma-HCH分解細菌のゲノムと可動性遺伝因子に関する研究2012

    • Author(s)
      永田裕二,田端理朗,大畑智史,大坪嘉行,津田雅孝
    • Organizer
      第64回日本生物工学会大会
    • Place of Presentation
      神戸(口頭発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] Genomes and mobile genetic elements of gamma-hexachlorocyclohexane-degrading bacterial strains2012

    • Author(s)
      Y. Nagata, M. Tabata, S. Ohhata, Y. Ohtsubo, and M. Tsuda
    • Organizer
      15th International Biotechnology Symposium and Exhibition (IBS 2012)
    • Place of Presentation
      Daegu, Korea(口頭発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] 細菌の有機塩素系殺虫剤分解資化能力を支えるABCトランスポーター2012

    • Author(s)
      永田裕二、遠藤諒、大坪嘉行、津田雅孝
    • Organizer
      第7回トランスポーター研究会年会
    • Place of Presentation
      京都
    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Invited
  • [Presentation] Metagenomic Analysis of Microbial Community in Soil Contaminated with Aromatic Pollutants2012

    • Author(s)
      M. Tsudaら
    • Organizer
      Japan-Finland Biotechnology Symposium 2012
    • Place of Presentation
      Sendai, Japan
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] 環境汚染物質gamma-hexachlorocyclohexaneの分解能を有するSphingobium sp. TKS株のゲノム構造の解明2012

    • Author(s)
      大畑智史ら
    • Organizer
      環境バイオテクノロジー学会2012年度大会
    • Place of Presentation
      宇治
    • Related Report
      2012 Research-status Report
  • [Presentation] 培養非依存的手法を用いた芳香族化合物複合汚染土壌からの新規分解酵素遺伝子の探索2012

    • Author(s)
      永山浩史ら
    • Organizer
      環境バイオテクノロジー学会2012年度大会
    • Place of Presentation
      宇治
    • Related Report
      2012 Research-status Report
  • [Presentation] 細菌由来のβ-ヘキサクロロシクロヘキサン (β-HCH) 分解酵素linB_MIを導入したカボチャ毛状根のβ-HCH分解能の解析2012

    • Author(s)
      七里吉彦ら
    • Organizer
      第30回 日本植物細胞分子生物学会 (生駒) 大会・シンポジウム
    • Place of Presentation
      奈良県生駒市
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Response of soil microbial community against pulse perturbation by aromatic pollutants2012

    • Author(s)
      H. Kato et al.
    • Organizer
      14th International Symposium on Microbial Ecology
    • Place of Presentation
      Copenhagen, Denmark
    • Related Report
      2012 Research-status Report
  • [Presentation] Multiple plasmids of γ-hexachlorocylohexane-degrading bacterium Sphingomonas sp. MM-12012

    • Author(s)
      M. Tabata et al.
    • Organizer
      International Plasmid Biology Conference 2012
    • Place of Presentation
      Santander, Spain
    • Related Report
      2012 Research-status Report
  • [Presentation] Relationship between intergeneric conjugative transfer of plasmid NAH7 and nitrogen-related phosphotransferase system2012

    • Author(s)
      K. Inoue et al.
    • Organizer
      International Plasmid Biology Conference 2012
    • Place of Presentation
      Santander, Spain
    • Related Report
      2012 Research-status Report
  • [Presentation] Genomes and mobile genetic elements of gamma-hexachlorocyclohexane-degrading bacterial strains2012

    • Author(s)
      Y. Nagata et al.
    • Organizer
      15th International Biotechnology Symposium and Exhibition (IBS 2012)
    • Place of Presentation
      Daegu, Korea
    • Related Report
      2012 Research-status Report
  • [Presentation] Isolation of aromatic ring-hydroxylating oxygenase genes by cultivation-independent functional screening of metagenome from soil artificially contaminated with aromatic hydrocarbons2012

    • Author(s)
      H. Nagayama et al.
    • Organizer
      15th International Biotechnology Symposium and Exhibition (IBS 2012)
    • Place of Presentation
      Daegu, Korea
    • Related Report
      2012 Research-status Report
  • [Presentation] 有機塩素系殺虫剤gamma-HCH分解細菌のゲノムと可動性遺伝因子に関する研究2012

    • Author(s)
      永田裕二ら
    • Organizer
      第64回日本生物工学会大会
    • Place of Presentation
      神戸
    • Related Report
      2012 Research-status Report
  • [Presentation] 細菌ゲノムに存在する多様なハロアルカンデハロゲナーゼ遺伝子の機能解析2012

    • Author(s)
      田中裕興ら
    • Organizer
      第64回日本生物工学会大会
    • Place of Presentation
      神戸
    • Related Report
      2012 Research-status Report
  • [Presentation] 有機塩素系殺虫剤gamma-HCH分解細菌が突然変異により炭素源非添加無機寒天培地上で生育可能となる機構の解析2012

    • Author(s)
      平野丈ら
    • Organizer
      第64回日本生物工学会大会
    • Place of Presentation
      神戸
    • Related Report
      2012 Research-status Report
  • [Presentation] ハロアルカンデハロゲナーセLinBのbeta-HCH分解活性に関する機能進化2012

    • Author(s)
      田中裕興ら
    • Organizer
      第85回日本生化学会大会・第35回日本分子生物学会年会合同大会
    • Place of Presentation
      福岡
    • Related Report
      2012 Research-status Report
  • [Presentation] Genetic analysis of multiple plasmids in γ-hexachlorocylohexane-degrading bacterium Sphingomonas sp. MM-12012

    • Author(s)
      M. Tabata et al.
    • Organizer
      International Forum for Ecosystem Adaptability Science IV: Interface Between Policy and Science
    • Place of Presentation
      Sendai, Japan
    • Related Report
      2012 Research-status Report
  • [Presentation] Analysis of nitrogen-related phosphotransferase system in recipient cells involved in regulation of conjugative transfer2012

    • Author(s)
      K. Inoue et al.
    • Organizer
      International Forum for Ecosystem Adaptability Science IV: Interface Between Policy and Science
    • Place of Presentation
      Sendai, Japan
    • Related Report
      2012 Research-status Report
  • [Book] Appearance and evolution ofγ-hexachlorocyclohexane-degrading bacteria. (In : Nojiri H, Tsuda M, Fukuda M, Kamagata Y (eds)) Biodegradative Bacteria.2014

    • Author(s)
      Nagata Y, Tabata M, Ohhata S, Tsuda M
    • Publisher
      Springer Verlag, Tokyo( doi:10.1007/978-4-431-54520-0_2)
    • Related Report
      2013 Final Research Report
  • [Book] Strategies to reveal genomic function in natural soil systems. (In : Nojiri H, Tsuda M, Fukuda M, Kamagata Y (eds) )Biodegradative Bacteria.2014

    • Author(s)
      Ohtsubo Y, Nishiyama E, Ishibashi Y, Nagata Y, Tsuda M
    • Publisher
      Springer Verlag, Tokyo(doi:10.1007/978-4-431-54520-0_14)
    • Related Report
      2013 Final Research Report
  • [Book] Appearance and evolution of γ-hexachlorocyclohexane-degrading bacteria. In Biodegradative Bacteria2014

    • Author(s)
      Nagata Y, Tabata M, Ohhata S, Tsuda M
    • Total Pages
      358
    • Publisher
      Springer Verlag, Tokyo
    • Related Report
      2013 Annual Research Report
  • [Book] Strategies to reveal genomic function in natural soil systems. In Biodegradative Bacteria2014

    • Author(s)
      Ohtsubo Y, Nishiyama E, Ishibashi Y, Nagata Y Tsuda M
    • Total Pages
      358
    • Publisher
      Springer Verlag, Tokyo
    • Related Report
      2013 Annual Research Report

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Published: 2013-05-31   Modified: 2019-07-29  

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